Wall clock time and date at job start Fri Apr 10 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.36541 * 127.14122 * 90.02260 * 3 2 1 5 5 S 1.76202 * 126.48421 * 0.02562 * 4 3 2 6 6 C 1.80995 * 99.99647 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47246 * 179.97438 * 6 5 4 8 8 H 1.09009 * 109.46895 * 60.00068 * 7 6 5 9 9 O 1.42898 * 109.47376 * 300.00358 * 7 6 5 10 10 C 1.50698 * 109.47402 * 179.97438 * 7 6 5 11 11 H 1.07992 * 120.00396 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99660 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00278 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99573 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.46918 * 90.00391 * 14 12 10 16 16 H 1.48500 * 109.46750 * 210.00302 * 14 12 10 17 17 H 1.48503 * 109.47254 * 330.00266 * 14 12 10 18 18 N 1.31289 * 107.02698 * 180.02562 * 4 3 2 19 19 N 1.28517 * 109.85955 * 359.97438 * 18 4 3 20 20 C 1.30301 * 110.07717 * 359.72242 * 19 18 4 21 21 C 1.50707 * 126.34286 * 180.30660 * 20 19 18 22 22 C 1.53004 * 117.49293 * 8.78052 * 21 20 19 23 23 C 1.52998 * 117.49745 * 300.16037 * 21 20 19 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 28 28 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 29 29 H 1.09000 * 109.47709 * 300.00229 * 6 5 4 30 30 H 1.09003 * 109.47458 * 60.00266 * 6 5 4 31 31 H 0.96703 * 114.00032 * 300.00018 * 9 7 6 32 32 H 0.97001 * 119.99576 * 179.97438 * 13 12 10 33 33 H 1.08995 * 115.54784 * 154.48486 * 21 20 19 34 34 H 1.08996 * 117.49998 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.49271 * 145.02153 * 22 21 20 36 36 H 1.09003 * 117.49843 * 214.97553 * 23 21 20 37 37 H 1.08997 * 117.50076 * 359.97007 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2936 2.1584 1.0884 5 16 2.1292 1.6896 2.7790 6 6 2.6690 3.2187 3.5829 7 6 2.6080 3.0454 5.1019 8 1 3.2631 2.2269 5.4007 9 8 1.2663 2.7490 5.4940 10 6 3.0581 4.3183 5.7713 11 1 3.3572 5.1663 5.1733 12 6 3.0869 4.4006 7.1473 13 7 2.7221 3.3680 7.8756 14 14 3.6440 5.9787 7.9771 15 1 2.4715 6.8630 8.1968 16 1 4.2723 5.6559 9.2834 17 1 4.6313 6.6717 7.1108 18 7 2.7039 3.3209 0.6369 19 7 2.7017 3.3156 -0.6482 20 6 2.2991 2.1578 -1.0901 21 6 2.1642 1.7510 -2.5349 22 6 2.7227 2.7053 -3.5925 23 6 1.2099 2.5644 -3.4116 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.6923 3.4451 3.2835 30 1 2.0137 4.0371 3.2845 31 1 0.6271 3.4357 5.2594 32 1 2.7427 3.4259 8.8437 33 1 2.2400 0.6816 -2.7312 34 1 3.1872 3.6274 -3.2433 35 1 3.1661 2.2636 -4.4849 36 1 0.6582 2.0300 -4.1851 37 1 0.6793 3.3933 -2.9434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331809279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:23 Heat of formation + Delta-G solvation = 22.837561 kcal Electronic energy + Delta-G solvation = -19632.861289 eV Core-core repulsion = 16537.678256 eV Total energy + Delta-G solvation = -3095.183033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.97850 -38.11740 -37.95557 -36.74887 -34.31253 -31.92928 -31.58841 -31.29132 -27.45019 -25.67226 -24.80924 -23.75604 -23.22840 -22.75554 -21.03038 -19.31246 -18.73645 -17.76608 -17.15623 -16.71813 -16.62101 -16.27643 -16.08994 -15.59996 -15.33268 -15.20126 -14.29802 -14.15670 -13.52303 -13.50989 -13.35863 -13.21345 -12.86858 -12.79172 -12.53854 -12.37479 -12.35866 -12.21359 -12.07509 -11.87958 -11.52744 -11.35157 -11.32831 -11.11552 -10.75040 -10.57858 -10.35906 -8.65676 -8.18932 -6.45432 0.06160 0.53014 1.12475 1.41395 1.42218 1.53333 1.59183 1.61526 2.38637 2.90401 3.07571 3.20363 3.51870 3.77885 3.90932 3.96302 4.03809 4.06716 4.14154 4.19656 4.24142 4.28365 4.50462 4.66951 4.78062 4.80531 4.89715 4.91665 5.02226 5.13372 5.16811 5.27595 5.47738 5.63374 5.76037 5.94872 6.62980 7.25910 7.42297 7.53913 8.85627 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030295 B = 0.003742 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.027949 B = 7481.299517 C = 8180.543407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.457 5.457 4 C 0.147 3.853 5 S 0.021 5.979 6 C -0.103 4.103 7 C 0.250 3.750 8 H 0.039 0.961 9 O -0.569 6.569 10 C -0.586 4.586 11 H 0.059 0.941 12 C 0.032 3.968 13 N -0.894 5.894 14 Si 0.963 3.037 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.268 1.268 18 N -0.336 5.336 19 N -0.331 5.331 20 C 0.216 3.784 21 C -0.095 4.095 22 C -0.148 4.148 23 C -0.145 4.145 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.360 0.640 32 H 0.265 0.735 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 -9.415 -22.270 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.150 5.150 4 C -0.229 4.229 5 S 0.250 5.750 6 C -0.252 4.252 7 C 0.190 3.810 8 H 0.057 0.943 9 O -0.373 6.373 10 C -0.625 4.625 11 H 0.078 0.922 12 C -0.171 4.171 13 N -0.530 5.530 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.192 1.192 18 N -0.180 5.180 19 N -0.170 5.170 20 C -0.054 4.054 21 C -0.116 4.116 22 C -0.186 4.186 23 C -0.183 4.183 24 H 0.129 0.871 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.205 0.795 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.211 -9.682 -21.380 23.845 hybrid contribution 0.224 1.442 0.301 1.490 sum -3.987 -8.241 -21.079 22.981 Atomic orbital electron populations 1.22132 0.92393 1.05092 1.02523 1.22384 0.97142 0.76555 1.06837 1.46705 1.49743 1.15026 1.03551 1.27196 1.05823 0.92362 0.97530 1.85490 1.83539 1.21403 0.84569 1.24412 1.04247 0.95913 1.00642 1.18958 0.82077 0.95687 0.84304 0.94333 1.86517 1.18646 1.47765 1.84415 1.21852 1.48330 0.99941 0.92413 0.92238 1.25846 0.93723 0.99601 0.97960 1.70189 1.45481 1.31439 1.05905 0.85511 0.78738 0.79313 0.77756 1.19646 1.20473 1.19239 1.74629 1.21538 1.18077 1.03767 1.73758 1.20643 1.19679 1.02927 1.24752 1.00562 0.87891 0.92153 1.20436 1.10375 1.00255 0.80509 1.23094 0.96735 0.99998 0.98789 1.23131 0.93138 1.01211 1.00822 0.87061 0.91440 0.93720 0.88334 0.84857 0.90083 0.90149 0.79462 0.92608 0.82435 0.89940 0.84689 0.84346 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.24 71.98 0.74 -1.63 16 2 C 0.09 1.53 6.61 86.38 0.57 2.10 16 3 N -0.46 -12.48 2.81 -513.10 -1.44 -13.93 16 4 C 0.15 5.29 8.07 179.55 1.45 6.74 16 5 S 0.02 0.76 21.44 -56.49 -1.21 -0.45 16 6 C -0.10 -4.51 4.87 71.98 0.35 -4.16 16 7 C 0.25 12.79 2.87 29.85 0.09 12.87 16 8 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 9 O -0.57 -28.97 12.32 -148.98 -1.84 -30.81 16 10 C -0.59 -32.43 8.76 25.60 0.22 -32.21 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 12 C 0.03 1.80 5.40 84.66 0.46 2.26 16 13 N -0.89 -52.58 12.84 21.45 0.28 -52.30 16 14 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 N -0.34 -13.95 11.60 -56.85 -0.66 -14.61 16 19 N -0.33 -12.27 11.79 -49.52 -0.58 -12.85 16 20 C 0.22 6.01 7.59 137.63 1.04 7.06 16 21 C -0.10 -1.55 5.99 -11.54 -0.07 -1.62 16 22 C -0.15 -2.20 10.15 30.60 0.31 -1.88 16 23 C -0.14 -1.95 10.23 30.59 0.31 -1.64 16 24 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.10 1.70 7.86 -2.39 -0.02 1.69 16 28 H 0.13 1.21 7.43 -2.39 -0.02 1.20 16 29 H 0.08 3.67 8.14 -2.40 -0.02 3.65 16 30 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.36 16.35 9.04 -74.06 -0.67 15.68 16 32 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.16 1.41 7.53 -2.39 -0.02 1.39 16 34 H 0.08 1.72 7.92 -2.39 -0.02 1.70 16 35 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.65 333.56 2.45 -71.20 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.41 Total: 20.37 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.47 Total: -12.12 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -2.41 Total: -93.69 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.84 Total: -30.81 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.21 Total: -0.45 kcal Total: -73.65 2.45 -71.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331809279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.033 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds