Wall clock time and date at job start Fri Apr 10 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86794 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47098 * 270.00085 * 3 2 1 5 5 H 1.48506 * 109.47120 * 29.99626 * 3 2 1 6 6 H 1.48493 * 109.47263 * 150.00019 * 3 2 1 7 7 C 1.40048 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99814 * 359.97438 * 7 2 1 10 10 O 1.21680 * 120.00164 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99377 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99607 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46913 * 324.99737 * 12 11 9 14 14 C 1.53000 * 109.47195 * 205.00193 * 12 11 9 15 15 C 1.52994 * 109.47355 * 64.99536 * 14 12 11 16 16 C 1.50699 * 109.47323 * 180.02562 * 15 14 12 17 17 C 1.38234 * 119.99952 * 269.72448 * 16 15 14 18 18 C 1.38239 * 120.00089 * 179.76310 * 17 16 15 19 19 C 1.38232 * 119.99798 * 0.51488 * 18 17 16 20 20 C 1.38242 * 119.99802 * 359.74202 * 19 18 17 21 21 C 1.38230 * 120.00106 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47269 * 84.99789 * 12 11 9 23 23 F 1.39905 * 109.47157 * 184.99906 * 22 12 11 24 24 F 1.39900 * 109.47010 * 65.00297 * 22 12 11 25 25 H 0.96997 * 119.99450 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00498 * 0.02562 * 11 9 7 27 27 H 1.08997 * 109.47126 * 184.99788 * 14 12 11 28 28 H 1.09006 * 109.46749 * 304.99865 * 14 12 11 29 29 H 1.09009 * 109.47419 * 300.00609 * 15 14 12 30 30 H 1.09001 * 109.47150 * 60.00009 * 15 14 12 31 31 H 1.08002 * 119.99907 * 0.02562 * 17 16 15 32 32 H 1.07991 * 119.99948 * 180.23471 * 18 17 16 33 33 H 1.07994 * 120.00394 * 179.72461 * 19 18 17 34 34 H 1.08001 * 119.99405 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.99557 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.47261 * 305.00095 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0027 12 6 1.2164 -4.9165 0.0033 13 1 0.3055 -4.8098 0.5924 14 6 2.0933 -6.0114 0.6140 15 6 2.3536 -5.6936 2.0878 16 6 3.2179 -6.7718 2.6892 17 6 2.6338 -7.8788 3.2759 18 6 3.4266 -8.8702 3.8232 19 6 4.8033 -8.7494 3.7932 20 6 5.3873 -7.6398 3.2112 21 6 4.5946 -6.6508 2.6597 22 6 0.8531 -5.2962 -1.4336 23 9 0.0566 -6.4464 -1.4247 24 9 2.0225 -5.5444 -2.1602 25 1 -0.4849 0.8401 -0.0004 26 1 2.9190 -3.6478 0.0031 27 1 1.5840 -6.9717 0.5339 28 1 3.0421 -6.0575 0.0792 29 1 2.8630 -4.7332 2.1680 30 1 1.4050 -5.6474 2.6226 31 1 1.5580 -7.9712 3.3029 32 1 2.9703 -9.7368 4.2782 33 1 5.4227 -9.5217 4.2248 34 1 6.4629 -7.5453 3.1882 35 1 5.0509 -5.7837 2.2053 36 1 0.3036 -4.4773 -1.8980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600311826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:46 Heat of formation + Delta-G solvation = -138.570543 kcal Electronic energy + Delta-G solvation = -21821.840922 eV Core-core repulsion = 18133.525570 eV Total energy + Delta-G solvation = -3688.315351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.46584 -46.44385 -39.33775 -37.79437 -35.23850 -32.90747 -32.31364 -30.89877 -29.90557 -27.71025 -26.02496 -24.02587 -22.57718 -21.37976 -20.73761 -19.69136 -17.48450 -16.90774 -16.81232 -16.61602 -16.01352 -15.52139 -15.26728 -15.08970 -14.45340 -14.19386 -13.48835 -13.41424 -13.17576 -13.12348 -12.89939 -12.84919 -12.67642 -12.37829 -12.02661 -11.87347 -11.40553 -11.21663 -11.13861 -11.08396 -10.86909 -10.59509 -10.56264 -10.31147 -10.28970 -8.95508 -8.93894 -8.68099 -7.84572 -7.75568 -6.30319 -4.76390 1.34988 1.38371 3.08830 3.16403 3.19332 3.76497 3.99833 4.21926 4.48216 4.60475 4.66540 4.84812 4.86436 4.95294 5.06865 5.18382 5.29957 5.42154 5.51791 5.53828 5.58490 5.68794 5.80903 5.91208 5.98717 6.04201 6.09187 6.31060 6.42919 6.46066 6.48034 6.70832 7.00412 7.33670 7.71741 7.86708 8.19390 8.91642 9.32492 10.44510 10.62813 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.004505 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.145652 B = 6214.237660 C = 7313.678730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.551 3.449 10 O -0.579 6.579 11 N -0.752 5.752 12 C 0.116 3.884 13 H 0.105 0.895 14 C -0.119 4.119 15 C -0.079 4.079 16 C -0.072 4.072 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.116 4.116 22 C 0.243 3.757 23 F -0.214 7.214 24 F -0.210 7.210 25 H 0.270 0.730 26 H 0.387 0.613 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -13.038 4.634 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.357 3.643 10 O -0.462 6.462 11 N -0.408 5.408 12 C 0.007 3.993 13 H 0.123 0.877 14 C -0.157 4.157 15 C -0.116 4.116 16 C -0.072 4.072 17 C -0.137 4.137 18 C -0.139 4.139 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.134 4.134 22 C 0.188 3.812 23 F -0.196 7.196 24 F -0.192 7.192 25 H 0.081 0.919 26 H 0.219 0.781 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.571 -12.938 4.631 15.232 hybrid contribution 0.943 0.634 -0.140 1.145 sum 7.514 -12.304 4.491 15.100 Atomic orbital electron populations 1.70009 1.07073 1.27516 1.34724 1.25710 0.94647 1.00380 0.92524 0.86344 0.80155 0.81221 0.78915 1.19684 1.20411 1.18849 1.20858 0.93709 0.89115 1.54125 0.91224 1.18335 0.87280 0.82367 0.76367 1.90617 1.13945 1.86564 1.55043 1.46203 1.08862 1.03610 1.82094 1.21476 0.98848 0.86955 0.91994 0.87709 1.21772 1.00541 0.98075 0.95281 1.20592 0.99371 0.96883 0.94764 1.20025 0.94114 0.95824 0.97248 1.21112 0.99950 0.93957 0.98668 1.21119 0.93915 0.98862 1.00000 1.21098 0.94993 0.98224 1.00654 1.21138 0.99690 0.94379 0.98602 1.21134 0.93277 0.99253 0.99776 1.22815 0.78313 0.84627 0.95490 1.92906 1.74577 1.54621 1.97453 1.92904 1.50956 1.95275 1.80030 0.91947 0.78058 0.90704 0.90914 0.89877 0.90736 0.86074 0.86356 0.86493 0.86290 0.85876 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.00 11.83 55.55 0.66 -21.34 16 2 C 0.09 2.34 5.50 -17.36 -0.10 2.25 16 3 Si 0.91 19.43 29.56 -169.99 -5.02 14.41 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.54 -14.47 9.54 -35.63 -0.34 -14.81 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 C 0.55 14.53 7.71 -12.98 -0.10 14.43 16 10 O -0.58 -17.40 14.68 5.21 0.08 -17.32 16 11 N -0.75 -15.36 4.51 -55.21 -0.25 -15.60 16 12 C 0.12 2.07 2.17 -67.93 -0.15 1.93 16 13 H 0.11 2.06 7.58 -51.93 -0.39 1.67 16 14 C -0.12 -1.71 4.45 -26.73 -0.12 -1.83 16 15 C -0.08 -1.08 5.23 -27.89 -0.15 -1.22 16 16 C -0.07 -0.91 5.13 -104.63 -0.54 -1.45 16 17 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 18 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 19 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 21 C -0.12 -1.39 9.70 -39.59 -0.38 -1.77 16 22 C 0.24 4.39 5.05 37.16 0.19 4.58 16 23 F -0.21 -3.73 16.93 2.25 0.04 -3.70 16 24 F -0.21 -3.78 16.70 2.25 0.04 -3.75 16 25 H 0.27 7.06 8.29 -40.82 -0.34 6.73 16 26 H 0.39 7.06 8.58 -40.82 -0.35 6.71 16 27 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 28 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 29 H 0.08 1.21 7.70 -51.92 -0.40 0.81 16 30 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.11 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -31.44 322.04 -7.33 -38.77 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.46 Total: 8.46 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -3.26 Total: -4.78 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.41 Total: -36.95 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.08 Total: -17.32 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.08 Total: -7.44 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.44 -7.33 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600311826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.804 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds