Wall clock time and date at job start Fri Apr 10 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86794 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47098 * 270.00085 * 3 2 1 5 5 H 1.48506 * 109.47120 * 29.99626 * 3 2 1 6 6 H 1.48493 * 109.47263 * 150.00019 * 3 2 1 7 7 C 1.40048 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99814 * 359.97438 * 7 2 1 10 10 O 1.21680 * 120.00164 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99377 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99607 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46913 * 324.99737 * 12 11 9 14 14 C 1.53000 * 109.47195 * 205.00193 * 12 11 9 15 15 C 1.52994 * 109.47355 * 64.99536 * 14 12 11 16 16 C 1.50699 * 109.47323 * 180.02562 * 15 14 12 17 17 C 1.38234 * 119.99952 * 269.72448 * 16 15 14 18 18 C 1.38239 * 120.00089 * 179.76310 * 17 16 15 19 19 C 1.38232 * 119.99798 * 0.51488 * 18 17 16 20 20 C 1.38242 * 119.99802 * 359.74202 * 19 18 17 21 21 C 1.38230 * 120.00106 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47269 * 84.99789 * 12 11 9 23 23 F 1.39905 * 109.47157 * 184.99906 * 22 12 11 24 24 F 1.39900 * 109.47010 * 65.00297 * 22 12 11 25 25 H 0.96997 * 119.99450 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00498 * 0.02562 * 11 9 7 27 27 H 1.08997 * 109.47126 * 184.99788 * 14 12 11 28 28 H 1.09006 * 109.46749 * 304.99865 * 14 12 11 29 29 H 1.09009 * 109.47419 * 300.00609 * 15 14 12 30 30 H 1.09001 * 109.47150 * 60.00009 * 15 14 12 31 31 H 1.08002 * 119.99907 * 0.02562 * 17 16 15 32 32 H 1.07991 * 119.99948 * 180.23471 * 18 17 16 33 33 H 1.07994 * 120.00394 * 179.72461 * 19 18 17 34 34 H 1.08001 * 119.99405 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.99557 * 179.97438 * 21 20 19 36 36 H 1.09004 * 109.47261 * 305.00095 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0027 12 6 1.2164 -4.9165 0.0033 13 1 0.3055 -4.8098 0.5924 14 6 2.0933 -6.0114 0.6140 15 6 2.3536 -5.6936 2.0878 16 6 3.2179 -6.7718 2.6892 17 6 2.6338 -7.8788 3.2759 18 6 3.4266 -8.8702 3.8232 19 6 4.8033 -8.7494 3.7932 20 6 5.3873 -7.6398 3.2112 21 6 4.5946 -6.6508 2.6597 22 6 0.8531 -5.2962 -1.4336 23 9 0.0566 -6.4464 -1.4247 24 9 2.0225 -5.5444 -2.1602 25 1 -0.4849 0.8401 -0.0004 26 1 2.9190 -3.6478 0.0031 27 1 1.5840 -6.9717 0.5339 28 1 3.0421 -6.0575 0.0792 29 1 2.8630 -4.7332 2.1680 30 1 1.4050 -5.6474 2.6226 31 1 1.5580 -7.9712 3.3029 32 1 2.9703 -9.7368 4.2782 33 1 5.4227 -9.5217 4.2248 34 1 6.4629 -7.5453 3.1882 35 1 5.0509 -5.7837 2.2053 36 1 0.3036 -4.4773 -1.8980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600311826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:46 Heat of formation + Delta-G solvation = -156.723441 kcal Electronic energy + Delta-G solvation = -21822.628090 eV Core-core repulsion = 18133.525570 eV Total energy + Delta-G solvation = -3689.102520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.97124 -47.94097 -40.28146 -39.57732 -36.80748 -34.67961 -33.92676 -31.72180 -31.38860 -29.04016 -27.95804 -25.24020 -23.40940 -22.89861 -21.85370 -21.40654 -19.32990 -18.35002 -18.27720 -17.84439 -17.43657 -17.30713 -16.49480 -16.11556 -15.87902 -15.69798 -14.92091 -14.67012 -14.49011 -14.41319 -14.33591 -14.16225 -14.04821 -13.86160 -13.51967 -13.15957 -13.02337 -12.77530 -12.63832 -12.43137 -12.22494 -12.08755 -12.00315 -11.66382 -11.58476 -10.93550 -9.92298 -9.77454 -9.70027 -9.50851 -8.30858 -6.86716 0.48907 0.54696 1.41986 1.42359 1.57705 2.23124 2.39665 2.72047 2.89293 2.99499 3.29544 3.41252 3.67582 3.89707 3.94652 4.02639 4.20413 4.21969 4.27188 4.35623 4.46329 4.59502 4.68432 4.74575 4.80357 5.02579 5.13911 5.23783 5.27786 5.32642 5.62552 5.66641 5.79177 5.85116 6.05566 6.17799 6.22781 6.86758 7.45069 8.43757 8.64089 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.004505 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.145652 B = 6214.237660 C = 7313.678730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.541 3.459 10 O -0.624 6.624 11 N -0.737 5.737 12 C 0.118 3.882 13 H 0.085 0.915 14 C -0.104 4.104 15 C -0.071 4.071 16 C -0.089 4.089 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.125 4.125 21 C -0.131 4.131 22 C 0.253 3.747 23 F -0.207 7.207 24 F -0.206 7.206 25 H 0.275 0.725 26 H 0.400 0.600 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -13.743 5.184 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.605 4.605 8 H 0.106 0.894 9 C 0.346 3.654 10 O -0.511 6.511 11 N -0.392 5.392 12 C 0.010 3.990 13 H 0.103 0.897 14 C -0.142 4.142 15 C -0.109 4.109 16 C -0.089 4.089 17 C -0.150 4.150 18 C -0.143 4.143 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.149 4.149 22 C 0.197 3.803 23 F -0.189 7.189 24 F -0.187 7.187 25 H 0.085 0.915 26 H 0.235 0.765 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.854 -13.691 5.180 17.108 hybrid contribution 0.256 0.725 -0.298 0.825 sum 9.110 -12.966 4.881 16.581 Atomic orbital electron populations 1.70164 1.09365 1.28993 1.36144 1.26883 0.95466 1.04728 0.91239 0.85069 0.78861 0.75413 0.79315 1.18826 1.19973 1.17261 1.21400 0.94830 0.89878 1.54378 0.89366 1.18584 0.86860 0.84011 0.75910 1.90580 1.15878 1.87618 1.57020 1.45783 1.09387 1.03284 1.80741 1.21536 0.98652 0.86838 0.91966 0.89676 1.21682 1.00039 0.96830 0.95649 1.20455 0.99241 0.96972 0.94192 1.19946 0.94374 0.95978 0.98596 1.21296 1.00600 0.94167 0.98970 1.21436 0.94260 0.99151 0.99481 1.21478 0.95222 0.98537 0.99794 1.21443 1.00802 0.94077 0.97999 1.21297 0.93186 1.00019 1.00376 1.22493 0.78241 0.84354 0.95229 1.92919 1.74435 1.54095 1.97419 1.92912 1.50650 1.95231 1.79947 0.91531 0.76540 0.89615 0.90117 0.91105 0.91459 0.85545 0.84141 0.83898 0.84196 0.85557 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.18 11.83 21.84 0.26 -47.92 16 2 C 0.03 1.75 5.50 85.30 0.47 2.21 16 3 Si 0.99 39.56 29.56 68.60 2.03 41.59 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.57 -30.56 9.54 24.83 0.24 -30.32 16 8 H 0.09 4.25 7.85 -2.91 -0.02 4.23 16 9 C 0.54 29.23 7.71 86.36 0.67 29.90 16 10 O -0.62 -39.03 14.68 -4.28 -0.06 -39.09 16 11 N -0.74 -30.45 4.51 -446.82 -2.01 -32.47 16 12 C 0.12 4.28 2.17 44.99 0.10 4.38 16 13 H 0.09 3.47 7.58 -2.39 -0.02 3.46 16 14 C -0.10 -2.94 4.45 30.59 0.14 -2.80 16 15 C -0.07 -1.94 5.23 29.85 0.16 -1.78 16 16 C -0.09 -2.17 5.13 -19.87 -0.10 -2.28 16 17 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 18 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 19 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 20 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 21 C -0.13 -2.95 9.70 22.27 0.22 -2.73 16 22 C 0.25 9.18 5.05 71.98 0.36 9.54 16 23 F -0.21 -7.14 16.93 44.97 0.76 -6.38 16 24 F -0.21 -7.24 16.70 44.97 0.75 -6.49 16 25 H 0.27 14.74 8.29 -92.71 -0.77 13.97 16 26 H 0.40 14.45 8.58 -92.71 -0.80 13.65 16 27 H 0.09 2.27 7.82 -2.39 -0.02 2.25 16 28 H 0.08 2.17 7.85 -2.38 -0.02 2.16 16 29 H 0.07 2.07 7.70 -2.38 -0.02 2.06 16 30 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 31 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 32 H 0.14 1.93 8.06 -2.92 -0.02 1.91 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.09 3.77 8.14 -2.38 -0.02 3.75 16 Total: -1.00 -68.63 322.04 5.15 -63.47 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.30 Total: 30.28 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 3.13 Total: -3.00 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.76 Total: -80.38 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.06 Total: -39.09 kcal Atomic # 9 Polarization: -14.39 SS G_CDS: 1.51 Total: -12.87 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -68.63 5.15 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600311826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.249 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds