Wall clock time and date at job start Fri Apr 10 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99726 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00067 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.09004 * 109.47372 * 34.71852 * 12 11 9 14 14 C 1.52999 * 109.46963 * 154.72290 * 12 11 9 15 15 C 1.52997 * 109.47080 * 294.99494 * 14 12 11 16 16 C 1.50701 * 109.47234 * 180.02562 * 15 14 12 17 17 C 1.38239 * 120.00107 * 269.72928 * 16 15 14 18 18 C 1.38231 * 120.00360 * 179.76640 * 17 16 15 19 19 C 1.38240 * 119.99539 * 0.50545 * 18 17 16 20 20 C 1.38231 * 120.00302 * 359.74712 * 19 18 17 21 21 C 1.38235 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47036 * 274.72131 * 12 11 9 23 23 F 1.39894 * 109.47202 * 180.02562 * 22 12 11 24 24 F 1.39903 * 109.47248 * 300.00283 * 22 12 11 25 25 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 27 27 H 1.08997 * 109.47492 * 54.99915 * 14 12 11 28 28 H 1.09007 * 109.47243 * 174.99697 * 14 12 11 29 29 H 1.09002 * 109.47641 * 299.99883 * 15 14 12 30 30 H 1.08998 * 109.46968 * 60.00255 * 15 14 12 31 31 H 1.08001 * 119.99636 * 359.97438 * 17 16 15 32 32 H 1.07994 * 120.00594 * 180.23258 * 18 17 16 33 33 H 1.07999 * 119.99646 * 179.72596 * 19 18 17 34 34 H 1.07996 * 120.00286 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00303 * 179.97438 * 21 20 19 36 36 H 1.08997 * 109.47293 * 60.00168 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 1 0.3057 -4.8073 -0.5944 14 6 2.0937 -6.0088 -0.6205 15 6 2.3544 -5.6849 -2.0929 16 6 3.2179 -6.7611 -2.6988 17 6 4.5946 -6.6388 -2.6731 18 6 5.3868 -7.6283 -3.2246 19 6 4.8021 -8.7352 -3.8110 20 6 3.4253 -8.8550 -3.8413 21 6 2.6332 -7.8677 -3.2857 22 6 0.8527 -5.3021 1.4296 23 9 0.1537 -6.5139 1.4238 24 9 2.0216 -5.4421 2.1855 25 1 -0.4850 0.8400 -0.0004 26 1 2.9190 -3.6476 0.0002 27 1 3.0422 -6.0571 -0.0857 28 1 1.5844 -6.9695 -0.5445 29 1 1.4059 -5.6366 -2.6278 30 1 2.8637 -4.7242 -2.1689 31 1 5.0513 -5.7718 -2.2192 32 1 6.4624 -7.5346 -3.2012 33 1 5.4209 -9.5061 -4.2458 34 1 2.9684 -9.7195 -4.2998 35 1 1.5575 -7.9611 -3.3097 36 1 0.2278 -4.5239 1.8677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600311839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:48 Heat of formation + Delta-G solvation = -156.569533 kcal Electronic energy + Delta-G solvation = -21829.177744 eV Core-core repulsion = 18140.081897 eV Total energy + Delta-G solvation = -3689.095846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.96562 -47.93364 -40.28000 -39.57100 -36.80416 -34.68047 -33.92208 -31.72240 -31.38945 -29.04018 -27.96012 -25.23676 -23.40970 -22.89484 -21.85138 -21.40268 -19.32893 -18.33303 -18.28463 -17.84322 -17.43483 -17.30864 -16.49274 -16.11418 -15.87833 -15.69715 -14.90934 -14.65401 -14.48381 -14.42039 -14.32804 -14.16560 -14.04887 -13.87277 -13.51832 -13.15170 -13.02890 -12.78139 -12.63798 -12.41516 -12.21893 -12.08518 -12.00990 -11.66291 -11.58357 -10.93418 -9.92128 -9.77495 -9.69595 -9.50616 -8.30767 -6.86590 0.48883 0.54674 1.41892 1.42398 1.57670 2.23278 2.39785 2.73110 2.89240 2.99220 3.30120 3.41595 3.67548 3.90266 3.94699 4.03388 4.20466 4.21967 4.27356 4.35653 4.46290 4.59554 4.68490 4.74636 4.80263 5.02572 5.13886 5.23766 5.27817 5.32645 5.62523 5.66615 5.79172 5.85307 6.05958 6.17779 6.22854 6.86849 7.45177 8.43897 8.64204 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.004508 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.001003 B = 6210.122216 C = 7304.332340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.541 3.459 10 O -0.624 6.624 11 N -0.737 5.737 12 C 0.118 3.882 13 H 0.086 0.914 14 C -0.105 4.105 15 C -0.071 4.071 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.252 3.748 23 F -0.206 7.206 24 F -0.207 7.207 25 H 0.275 0.725 26 H 0.400 0.600 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -13.783 -5.251 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.605 4.605 8 H 0.106 0.894 9 C 0.347 3.653 10 O -0.511 6.511 11 N -0.392 5.392 12 C 0.010 3.990 13 H 0.104 0.896 14 C -0.142 4.142 15 C -0.109 4.109 16 C -0.089 4.089 17 C -0.149 4.149 18 C -0.143 4.143 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.150 4.150 22 C 0.197 3.803 23 F -0.188 7.188 24 F -0.188 7.188 25 H 0.085 0.915 26 H 0.234 0.766 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.712 -13.731 -5.234 17.083 hybrid contribution 0.276 0.730 0.278 0.828 sum 8.987 -13.001 -4.956 16.564 Atomic orbital electron populations 1.70152 1.09362 1.29000 1.36137 1.26877 0.95465 1.04716 0.91238 0.85072 0.78831 0.75419 0.79354 1.18706 1.19997 1.17356 1.21397 0.94817 0.89899 1.54391 0.89407 1.18578 0.86860 0.84009 0.75893 1.90580 1.15857 1.87623 1.57058 1.45767 1.09373 1.03291 1.80727 1.21538 0.98657 0.86814 0.92003 0.89614 1.21687 0.99991 0.96939 0.95626 1.20454 0.99254 0.96961 0.94184 1.19951 0.94370 0.95980 0.98598 1.21299 0.93201 1.00001 1.00400 1.21441 1.00799 0.94083 0.98002 1.21478 0.95222 0.98556 0.99777 1.21436 0.94260 0.99179 0.99449 1.21294 1.00609 0.94191 0.98922 1.22482 0.80146 0.83089 0.94631 1.92915 1.79453 1.49036 1.97375 1.92912 1.51046 1.96378 1.78487 0.91525 0.76567 0.90233 0.89517 0.91439 0.91130 0.85579 0.84203 0.83898 0.84131 0.85526 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.19 11.83 21.84 0.26 -47.93 16 2 C 0.03 1.76 5.50 85.31 0.47 2.23 16 3 Si 0.99 39.62 29.56 68.60 2.03 41.65 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.57 -30.64 9.54 24.83 0.24 -30.40 16 8 H 0.09 4.25 7.85 -2.91 -0.02 4.22 16 9 C 0.54 29.29 7.71 86.36 0.67 29.96 16 10 O -0.62 -39.02 14.68 -4.33 -0.06 -39.09 16 11 N -0.74 -30.52 4.45 -446.83 -1.99 -32.51 16 12 C 0.12 4.27 2.19 44.99 0.10 4.37 16 13 H 0.09 3.48 7.57 -2.39 -0.02 3.46 16 14 C -0.10 -2.95 4.49 30.59 0.14 -2.81 16 15 C -0.07 -1.94 5.23 29.85 0.16 -1.78 16 16 C -0.09 -2.18 5.13 -19.86 -0.10 -2.28 16 17 C -0.13 -2.96 9.70 22.27 0.22 -2.75 16 18 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 19 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 20 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 21 C -0.13 -2.93 9.70 22.27 0.22 -2.72 16 22 C 0.25 9.15 5.07 71.98 0.37 9.51 16 23 F -0.21 -7.01 16.73 44.97 0.75 -6.25 16 24 F -0.21 -7.38 16.83 44.97 0.76 -6.62 16 25 H 0.27 14.74 8.29 -92.71 -0.77 13.97 16 26 H 0.40 14.53 8.58 -92.71 -0.80 13.74 16 27 H 0.08 2.15 7.94 -2.39 -0.02 2.13 16 28 H 0.09 2.29 7.66 -2.38 -0.02 2.28 16 29 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 30 H 0.07 2.07 7.69 -2.39 -0.02 2.05 16 31 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.09 3.77 8.14 -2.39 -0.02 3.76 16 Total: -1.00 -68.67 321.92 5.18 -63.49 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.30 Total: 30.33 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.13 Total: -3.07 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.73 Total: -80.44 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.06 Total: -39.09 kcal Atomic # 9 Polarization: -14.38 SS G_CDS: 1.51 Total: -12.87 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -68.67 5.18 -63.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600311839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.079 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds