Wall clock time and date at job start Fri Apr 10 2020 15:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86806 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47115 * 275.41613 * 3 2 1 5 5 H 1.48497 * 109.46710 * 35.41434 * 3 2 1 6 6 H 1.48496 * 109.46920 * 155.41420 * 3 2 1 7 7 C 1.39929 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00124 * 342.05407 * 7 2 1 9 9 C 1.41318 * 120.00469 * 161.77740 * 7 2 1 10 10 C 1.40776 * 120.20614 * 330.11895 * 9 7 2 11 11 C 1.37618 * 120.01801 * 179.97438 * 10 9 7 12 12 C 1.38509 * 120.45505 * 359.97438 * 11 10 9 13 13 C 1.39545 * 120.41959 * 0.02562 * 12 11 10 14 14 C 1.48391 * 120.01646 * 179.97438 * 13 12 11 15 15 C 1.39401 * 120.01599 * 130.00069 * 14 13 12 16 16 C 1.37992 * 119.71531 * 180.02562 * 15 14 13 17 17 C 1.38301 * 120.31713 * 359.97438 * 16 15 14 18 18 C 1.38698 * 120.66123 * 0.02917 * 17 16 15 19 19 C 1.38932 * 120.01850 * 309.73421 * 14 13 12 20 20 N 1.39623 * 111.63865 * 180.02562 * 18 17 16 21 21 C 1.46528 * 110.08855 * 359.97438 * 20 18 17 22 22 C 1.51258 * 130.83452 * 180.02562 * 17 16 15 23 23 C 1.39099 * 119.96703 * 359.72753 * 13 12 11 24 24 F 1.35108 * 120.22313 * 180.30033 * 23 13 12 25 25 H 0.96996 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99375 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.77648 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78954 * 180.02562 * 12 11 10 29 29 H 1.07994 * 120.13959 * 0.02753 * 15 14 13 30 30 H 1.07995 * 119.84111 * 179.97438 * 16 15 14 31 31 H 1.07998 * 119.90959 * 359.97438 * 19 14 13 32 32 H 0.96997 * 124.95513 * 179.97438 * 20 18 17 33 33 H 1.09003 * 110.28963 * 118.93621 * 21 20 18 34 34 H 1.08998 * 110.29463 * 241.06573 * 21 20 18 35 35 H 1.09004 * 110.42176 * 298.75164 * 22 17 16 36 36 H 1.09002 * 110.42070 * 61.21277 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3756 2.1125 -1.3938 5 1 1.5019 2.6169 0.8113 6 1 3.5926 1.4098 0.5825 7 6 2.0081 -1.2118 -0.0005 8 1 1.5076 -2.1246 0.2872 9 6 3.3682 -1.2424 -0.3832 10 6 3.8628 -0.3105 -1.3153 11 6 5.1880 -0.3435 -1.6848 12 6 6.0440 -1.2893 -1.1452 13 6 5.5735 -2.2218 -0.2198 14 6 6.4983 -3.2316 0.3522 15 6 6.5582 -3.4198 1.7322 16 6 7.4208 -4.3601 2.2575 17 6 8.2237 -5.1149 1.4218 18 6 8.1758 -4.9395 0.0468 19 6 7.3009 -3.9937 -0.4876 20 7 9.0601 -5.7955 -0.6125 21 6 9.7761 -6.6256 0.3598 22 6 9.2377 -6.1932 1.7332 23 6 4.2384 -2.2012 0.1700 24 9 3.7788 -3.0978 1.0701 25 1 -0.4850 0.8400 0.0004 26 1 3.2021 0.4305 -1.7405 27 1 5.5633 0.3730 -2.4005 28 1 7.0821 -1.3052 -1.4425 29 1 5.9322 -2.8322 2.3872 30 1 7.4691 -4.5073 3.3263 31 1 7.2503 -3.8505 -1.5568 32 1 9.1826 -5.8350 -1.5739 33 1 9.5636 -7.6804 0.1854 34 1 10.8484 -6.4400 0.2983 35 1 10.0432 -5.7916 2.3481 36 1 8.7576 -7.0332 2.2351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244017476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:40 Heat of formation + Delta-G solvation = -0.516911 kcal Electronic energy + Delta-G solvation = -21006.842469 eV Core-core repulsion = 17755.282797 eV Total energy + Delta-G solvation = -3251.559672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.38554 -40.04800 -37.78392 -35.99635 -33.73479 -32.07307 -30.75912 -29.91367 -28.78807 -27.45404 -25.22023 -23.15524 -22.00348 -21.59188 -20.59902 -20.15961 -17.61613 -16.97044 -16.42200 -15.58529 -15.44958 -15.35986 -14.92489 -14.76203 -14.18641 -13.74909 -13.58055 -13.36201 -13.06407 -12.63693 -12.37821 -12.14464 -12.11513 -12.04033 -11.96138 -11.57054 -11.37258 -11.07446 -10.84750 -10.52336 -10.40289 -9.97909 -9.82182 -9.77343 -9.23573 -8.52577 -7.69670 -7.47596 -7.07592 -7.03428 -4.56579 1.52049 1.92237 2.42959 2.51526 3.04954 3.15939 3.26616 3.47812 3.91236 4.11600 4.39465 4.66658 4.75839 5.01543 5.17283 5.28068 5.28587 5.49052 5.55878 5.61945 5.83616 5.83767 5.88655 5.93966 6.06788 6.16695 6.34041 6.43881 6.60513 6.69851 6.81675 6.85964 7.00106 7.07238 7.31023 7.38848 7.45176 7.55039 7.66622 7.88670 7.92305 8.26195 8.48929 8.65816 9.98386 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.004246 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.402018 B = 6592.726312 C = 6957.417788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.438 4.438 8 H 0.095 0.905 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.086 4.086 12 C -0.205 4.205 13 C -0.054 4.054 14 C 0.021 3.979 15 C -0.149 4.149 16 C -0.064 4.064 17 C -0.186 4.186 18 C 0.188 3.812 19 C -0.166 4.166 20 N -0.753 5.753 21 C 0.122 3.878 22 C -0.080 4.080 23 C 0.011 3.989 24 F -0.149 7.149 25 H 0.287 0.713 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.409 0.591 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.288 -6.784 0.730 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.466 4.466 8 H 0.113 0.887 9 C 0.062 3.938 10 C -0.238 4.238 11 C -0.104 4.104 12 C -0.224 4.224 13 C -0.055 4.055 14 C 0.020 3.980 15 C -0.169 4.169 16 C -0.082 4.082 17 C -0.191 4.191 18 C 0.086 3.914 19 C -0.189 4.189 20 N -0.387 5.387 21 C -0.003 4.003 22 C -0.117 4.117 23 C -0.009 4.009 24 F -0.128 7.128 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.078 -6.854 0.823 16.584 hybrid contribution 0.095 0.567 -0.390 0.695 sum 15.174 -6.288 0.433 16.430 Atomic orbital electron populations 1.69690 1.08121 1.30500 1.34034 1.26155 0.94765 1.01705 0.90848 0.86313 0.81474 0.79577 0.79017 1.19378 1.21520 1.16522 1.19408 0.92674 0.96542 1.37960 0.88667 1.17640 0.93207 0.91288 0.91669 1.20907 0.95761 1.04152 1.02940 1.20563 0.93579 0.97561 0.98702 1.20244 0.98621 0.99982 1.03570 1.18404 0.91219 0.96779 0.99116 1.18485 0.93354 0.93488 0.92667 1.20997 1.00896 1.00533 0.94438 1.20189 0.94748 0.94702 0.98600 1.19805 1.03520 1.02898 0.92853 1.18180 0.90637 0.90981 0.91561 1.20332 0.99839 0.99194 0.99495 1.44624 1.44648 1.41910 1.07521 1.21684 0.95825 0.94494 0.88283 1.20957 0.97178 0.97074 0.96532 1.17752 0.91123 0.95803 0.96212 1.91324 1.89520 1.66323 1.65630 0.90200 0.87420 0.88032 0.87782 0.85793 0.86524 0.86430 0.75412 0.92082 0.92097 0.90345 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.15 13.93 55.55 0.77 -20.38 16 2 C 0.09 2.22 5.40 -17.34 -0.09 2.12 16 3 Si 0.91 20.35 24.52 -169.99 -4.17 16.19 16 4 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.24 -5.55 6.86 56.52 0.39 -5.16 16 7 C -0.44 -12.02 9.25 -37.78 -0.35 -12.36 16 8 H 0.10 2.79 7.98 -52.48 -0.42 2.37 16 9 C 0.07 1.69 5.11 -106.80 -0.55 1.14 16 10 C -0.22 -5.13 7.16 -38.85 -0.28 -5.41 16 11 C -0.09 -1.79 10.01 -39.71 -0.40 -2.18 16 12 C -0.20 -4.19 9.50 -38.99 -0.37 -4.56 16 13 C -0.05 -1.18 5.47 -104.91 -0.57 -1.75 16 14 C 0.02 0.40 5.30 -105.03 -0.56 -0.15 16 15 C -0.15 -2.70 8.86 -39.24 -0.35 -3.05 16 16 C -0.06 -0.98 10.02 -39.65 -0.40 -1.37 16 17 C -0.19 -2.70 6.23 -104.16 -0.65 -3.34 16 18 C 0.19 2.85 7.02 -83.68 -0.59 2.26 16 19 C -0.17 -2.85 9.52 -38.86 -0.37 -3.22 16 20 N -0.75 -8.81 6.53 -58.15 -0.38 -9.19 16 21 C 0.12 1.14 7.96 -3.65 -0.03 1.11 16 22 C -0.08 -0.84 6.94 -27.23 -0.19 -1.02 16 23 C 0.01 0.28 7.15 -38.29 -0.27 0.00 16 24 F -0.15 -3.71 15.36 2.25 0.03 -3.68 16 25 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 26 H 0.11 2.49 4.73 -52.49 -0.25 2.24 16 27 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.10 1.87 8.03 -52.49 -0.42 1.45 16 29 H 0.12 2.29 7.75 -52.49 -0.41 1.88 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.12 1.91 8.03 -52.49 -0.42 1.49 16 32 H 0.41 3.96 8.96 -40.82 -0.37 3.59 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -28.78 304.39 -9.15 -37.93 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.99 Total: 6.34 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -6.01 Total: -31.80 kcal Atomic # 7 Polarization: -29.96 SS G_CDS: 0.39 Total: -29.57 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.17 Total: 16.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.78 -9.15 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244017476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.414 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds