Wall clock time and date at job start Fri Apr 10 2020 15:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86806 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47115 * 275.41613 * 3 2 1 5 5 H 1.48497 * 109.46710 * 35.41434 * 3 2 1 6 6 H 1.48496 * 109.46920 * 155.41420 * 3 2 1 7 7 C 1.39929 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00124 * 342.05407 * 7 2 1 9 9 C 1.41318 * 120.00469 * 161.77740 * 7 2 1 10 10 C 1.40776 * 120.20614 * 330.11895 * 9 7 2 11 11 C 1.37618 * 120.01801 * 179.97438 * 10 9 7 12 12 C 1.38509 * 120.45505 * 359.97438 * 11 10 9 13 13 C 1.39545 * 120.41959 * 0.02562 * 12 11 10 14 14 C 1.48391 * 120.01646 * 179.97438 * 13 12 11 15 15 C 1.39401 * 120.01599 * 130.00069 * 14 13 12 16 16 C 1.37992 * 119.71531 * 180.02562 * 15 14 13 17 17 C 1.38301 * 120.31713 * 359.97438 * 16 15 14 18 18 C 1.38698 * 120.66123 * 0.02917 * 17 16 15 19 19 C 1.38932 * 120.01850 * 309.73421 * 14 13 12 20 20 N 1.39623 * 111.63865 * 180.02562 * 18 17 16 21 21 C 1.46528 * 110.08855 * 359.97438 * 20 18 17 22 22 C 1.51258 * 130.83452 * 180.02562 * 17 16 15 23 23 C 1.39099 * 119.96703 * 359.72753 * 13 12 11 24 24 F 1.35108 * 120.22313 * 180.30033 * 23 13 12 25 25 H 0.96996 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99375 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.77648 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78954 * 180.02562 * 12 11 10 29 29 H 1.07994 * 120.13959 * 0.02753 * 15 14 13 30 30 H 1.07995 * 119.84111 * 179.97438 * 16 15 14 31 31 H 1.07998 * 119.90959 * 359.97438 * 19 14 13 32 32 H 0.96997 * 124.95513 * 179.97438 * 20 18 17 33 33 H 1.09003 * 110.28963 * 118.93621 * 21 20 18 34 34 H 1.08998 * 110.29463 * 241.06573 * 21 20 18 35 35 H 1.09004 * 110.42176 * 298.75164 * 22 17 16 36 36 H 1.09002 * 110.42070 * 61.21277 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3756 2.1125 -1.3938 5 1 1.5019 2.6169 0.8113 6 1 3.5926 1.4098 0.5825 7 6 2.0081 -1.2118 -0.0005 8 1 1.5076 -2.1246 0.2872 9 6 3.3682 -1.2424 -0.3832 10 6 3.8628 -0.3105 -1.3153 11 6 5.1880 -0.3435 -1.6848 12 6 6.0440 -1.2893 -1.1452 13 6 5.5735 -2.2218 -0.2198 14 6 6.4983 -3.2316 0.3522 15 6 6.5582 -3.4198 1.7322 16 6 7.4208 -4.3601 2.2575 17 6 8.2237 -5.1149 1.4218 18 6 8.1758 -4.9395 0.0468 19 6 7.3009 -3.9937 -0.4876 20 7 9.0601 -5.7955 -0.6125 21 6 9.7761 -6.6256 0.3598 22 6 9.2377 -6.1932 1.7332 23 6 4.2384 -2.2012 0.1700 24 9 3.7788 -3.0978 1.0701 25 1 -0.4850 0.8400 0.0004 26 1 3.2021 0.4305 -1.7405 27 1 5.5633 0.3730 -2.4005 28 1 7.0821 -1.3052 -1.4425 29 1 5.9322 -2.8322 2.3872 30 1 7.4691 -4.5073 3.3263 31 1 7.2503 -3.8505 -1.5568 32 1 9.1826 -5.8350 -1.5739 33 1 9.5636 -7.6804 0.1854 34 1 10.8484 -6.4400 0.2983 35 1 10.0432 -5.7916 2.3481 36 1 8.7576 -7.0332 2.2351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244017476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:39 Heat of formation + Delta-G solvation = -16.794630 kcal Electronic energy + Delta-G solvation = -21007.548324 eV Core-core repulsion = 17755.282797 eV Total energy + Delta-G solvation = -3252.265527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.30389 -41.17243 -39.47283 -37.27012 -35.57188 -33.41816 -32.23384 -31.52674 -29.93335 -28.79922 -27.10650 -24.47016 -23.40038 -22.61274 -22.32667 -21.60410 -19.32267 -18.42958 -18.04120 -17.16763 -16.75459 -16.51333 -16.42093 -16.33265 -15.98741 -15.33075 -15.11588 -14.68860 -14.49918 -14.14649 -13.86107 -13.77013 -13.56870 -13.23795 -13.02663 -12.90291 -12.79005 -12.67681 -12.46539 -12.09819 -11.84287 -11.79273 -11.58132 -11.10402 -10.92401 -9.93959 -9.51326 -9.08665 -8.96464 -8.18433 -6.59227 0.08737 0.62108 0.65363 0.90377 1.24369 1.38882 1.48378 2.09401 2.47039 2.55458 2.90003 3.30303 3.71111 3.81651 3.83797 3.89751 4.19198 4.31702 4.34483 4.47062 4.52811 4.59797 4.61636 4.70757 4.80444 4.88686 4.99651 5.09402 5.14953 5.20323 5.35665 5.50783 5.55480 5.61902 5.70418 5.71474 5.78901 5.90265 6.03280 6.25576 6.31973 6.58434 6.67886 7.00124 8.12480 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.004246 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.402018 B = 6592.726312 C = 6957.417788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.049 3.951 3 Si 0.967 3.033 4 H -0.243 1.243 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.484 4.484 8 H 0.048 0.952 9 C 0.047 3.953 10 C -0.225 4.225 11 C -0.080 4.080 12 C -0.186 4.186 13 C -0.050 4.050 14 C -0.010 4.010 15 C -0.173 4.173 16 C -0.063 4.063 17 C -0.187 4.187 18 C 0.187 3.813 19 C -0.176 4.176 20 N -0.745 5.745 21 C 0.117 3.883 22 C -0.080 4.080 23 C -0.024 4.024 24 F -0.163 7.163 25 H 0.297 0.703 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.419 0.581 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.724 -6.975 -0.207 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.166 4.166 3 Si 0.788 3.212 4 H -0.168 1.168 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.044 3.956 10 C -0.244 4.244 11 C -0.098 4.098 12 C -0.205 4.205 13 C -0.051 4.051 14 C -0.011 4.011 15 C -0.193 4.193 16 C -0.081 4.081 17 C -0.192 4.192 18 C 0.083 3.917 19 C -0.199 4.199 20 N -0.379 5.379 21 C -0.006 4.006 22 C -0.117 4.117 23 C -0.044 4.044 24 F -0.142 7.142 25 H 0.108 0.892 26 H 0.131 0.869 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.123 0.877 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.257 0.743 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.538 -7.079 -0.141 20.782 hybrid contribution -0.993 0.391 -0.117 1.074 sum 18.545 -6.687 -0.258 19.716 Atomic orbital electron populations 1.69715 1.09317 1.31869 1.36017 1.26889 0.95437 1.04277 0.90029 0.85472 0.79537 0.75789 0.80355 1.16760 1.20002 1.17648 1.19293 0.94209 0.95871 1.41895 0.93374 1.17830 0.92661 0.92636 0.92439 1.21094 0.97295 1.03626 1.02419 1.21049 0.92233 0.97947 0.98575 1.20784 1.00203 0.98121 1.01421 1.18784 0.90368 0.97383 0.98544 1.18451 0.94540 0.94619 0.93476 1.20965 1.02248 1.02074 0.94046 1.20416 0.93847 0.93682 1.00150 1.20319 1.03337 1.02966 0.92563 1.18325 0.90388 0.90630 0.92337 1.20328 1.00264 0.99847 0.99458 1.44799 1.43562 1.40993 1.08576 1.21960 0.96826 0.95052 0.86783 1.21126 0.96631 0.96121 0.97806 1.18150 0.92563 0.96396 0.97295 1.91270 1.89863 1.66797 1.66249 0.89188 0.86935 0.83494 0.84247 0.87717 0.84047 0.85891 0.74276 0.90144 0.89661 0.88317 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.06 13.93 21.82 0.30 -46.76 16 2 C 0.05 2.68 5.40 85.25 0.46 3.14 16 3 Si 0.97 42.31 24.52 68.60 1.68 43.99 16 4 H -0.24 -9.60 6.71 99.48 0.67 -8.93 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.25 -11.37 6.86 99.48 0.68 -10.68 16 7 C -0.48 -28.66 9.25 23.44 0.22 -28.44 16 8 H 0.05 3.16 7.98 -2.91 -0.02 3.14 16 9 C 0.05 2.55 5.11 -21.27 -0.11 2.44 16 10 C -0.23 -10.47 7.16 22.74 0.16 -10.30 16 11 C -0.08 -3.10 10.01 22.19 0.22 -2.88 16 12 C -0.19 -7.16 9.50 22.65 0.22 -6.95 16 13 C -0.05 -2.18 5.47 -20.05 -0.11 -2.29 16 14 C -0.01 -0.39 5.30 -20.13 -0.11 -0.50 16 15 C -0.17 -6.38 8.86 22.49 0.20 -6.18 16 16 C -0.06 -1.83 10.02 22.23 0.22 -1.61 16 17 C -0.19 -4.88 6.23 -19.56 -0.12 -5.00 16 18 C 0.19 5.16 7.02 38.31 0.27 5.43 16 19 C -0.18 -5.78 9.52 22.74 0.22 -5.57 16 20 N -0.75 -14.54 6.53 -337.87 -2.21 -16.75 16 21 C 0.12 1.61 7.96 86.62 0.69 2.30 16 22 C -0.08 -1.30 6.94 30.27 0.21 -1.09 16 23 C -0.02 -1.24 7.15 23.11 0.17 -1.08 16 24 F -0.16 -8.78 15.36 44.97 0.69 -8.09 16 25 H 0.30 14.70 8.30 -92.71 -0.77 13.93 16 26 H 0.11 5.06 4.73 -2.91 -0.01 5.05 16 27 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 28 H 0.14 4.41 8.03 -2.91 -0.02 4.39 16 29 H 0.10 4.12 7.75 -2.91 -0.02 4.10 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.12 3.76 8.03 -2.91 -0.02 3.74 16 32 H 0.42 6.53 8.96 -92.71 -0.83 5.70 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -67.91 304.39 3.50 -64.41 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.23 Total: 21.78 kcal Atomic # 6 Polarization: -61.38 SS G_CDS: 2.80 Total: -58.57 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -1.90 Total: -63.51 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.69 Total: -8.09 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.68 Total: 43.99 kcal Total: -67.91 3.50 -64.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244017476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.611 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds