Wall clock time and date at job start Fri Apr 10 2020 15:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47339 * 299.99765 * 3 2 1 6 6 H 1.48502 * 109.46716 * 59.99696 * 3 2 1 7 7 C 1.40015 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00137 * 165.24247 * 7 2 1 9 9 C 1.41043 * 120.00200 * 345.24402 * 7 2 1 10 10 C 1.41316 * 120.55082 * 334.09823 * 9 7 2 11 11 C 1.36585 * 118.41507 * 179.74702 * 10 9 7 12 12 C 1.39933 * 119.46921 * 0.53052 * 11 10 9 13 13 C 1.47885 * 119.45655 * 179.72097 * 12 11 10 14 14 C 1.39634 * 120.16020 * 356.13980 * 13 12 11 15 15 C 1.37887 * 119.87635 * 180.02562 * 14 13 12 16 16 C 1.38459 * 120.20713 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.83316 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49791 * 120.00452 * 17 16 15 19 19 C 1.53000 * 60.00169 * 107.49132 * 18 17 16 20 20 C 1.38277 * 120.33168 * 0.23880 * 16 15 14 21 21 C 1.38247 * 120.11642 * 359.48373 * 20 16 15 22 22 F 1.35095 * 120.10550 * 180.25313 * 21 20 16 23 23 N 1.33043 * 121.08781 * 359.45542 * 12 11 10 24 24 C 1.31265 * 121.72357 * 0.27150 * 23 12 11 25 25 H 0.97002 * 120.00255 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.79318 * 0.04278 * 10 9 7 27 27 H 1.08002 * 120.26589 * 180.28288 * 11 10 9 28 28 H 1.08001 * 120.06450 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.89816 * 179.97438 * 15 14 13 30 30 H 1.09003 * 115.56938 * 334.31352 * 17 16 15 31 31 H 1.08999 * 117.49671 * 359.97438 * 18 17 16 32 32 H 1.09007 * 117.49938 * 214.98068 * 18 17 16 33 33 H 1.08994 * 117.49813 * 107.49379 * 19 18 17 34 34 H 1.08997 * 117.49389 * 252.49118 * 19 18 17 35 35 H 1.07995 * 119.94503 * 179.72243 * 20 16 15 36 36 H 1.08007 * 119.79985 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3463 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8832 2.3964 1.2125 7 6 2.0080 -1.2126 0.0005 8 1 3.0613 -1.2282 -0.2377 9 6 1.3377 -2.4138 0.3122 10 6 0.1811 -2.4011 1.1241 11 6 -0.4365 -3.5891 1.3941 12 6 0.0942 -4.7747 0.8737 13 6 -0.5712 -6.0615 1.1713 14 6 -1.6715 -6.1001 2.0302 15 6 -2.2871 -7.3032 2.3040 16 6 -1.8174 -8.4726 1.7305 17 6 -2.4962 -9.7828 2.0360 18 6 -3.0937 -10.5597 0.8611 19 6 -1.8184 -11.0620 1.5410 20 6 -0.7251 -8.4449 0.8830 21 6 -0.1010 -7.2455 0.5946 22 9 0.9630 -7.2181 -0.2374 23 7 1.1845 -4.7630 0.1114 24 6 1.8104 -3.6467 -0.1807 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2079 -1.4738 1.5178 27 1 -1.3251 -3.6136 2.0075 28 1 -2.0392 -5.1896 2.4798 29 1 -3.1379 -7.3336 2.9685 30 1 -3.0226 -9.8288 2.9894 31 1 -2.9960 -10.1229 -0.1327 32 1 -4.0131 -11.1168 1.0416 33 1 -1.8988 -11.9495 2.1686 34 1 -0.8815 -10.9562 0.9942 35 1 -0.3611 -9.3614 0.4427 36 1 2.6929 -3.6732 -0.8029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244123803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:22 Heat of formation + Delta-G solvation = 25.431059 kcal Electronic energy + Delta-G solvation = -20566.527347 eV Core-core repulsion = 17316.092863 eV Total energy + Delta-G solvation = -3250.434484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.95053 -39.32819 -38.31302 -36.40712 -34.28972 -31.53452 -30.85924 -30.02494 -29.00443 -25.82806 -23.63924 -22.90954 -22.33328 -21.30418 -20.91080 -19.98341 -17.56211 -17.13550 -16.17459 -15.79135 -15.38819 -15.15860 -14.78721 -14.52768 -14.29105 -14.07292 -13.44295 -13.21231 -12.64882 -12.46708 -12.32987 -12.08797 -11.78518 -11.71196 -11.58280 -11.47494 -11.26079 -11.10594 -10.80830 -10.66633 -10.47805 -10.31628 -9.94524 -9.58698 -8.67223 -8.38915 -8.31400 -8.07326 -7.28802 -7.00780 -4.61089 1.31807 1.67393 2.57091 2.90233 2.92906 2.97936 3.08023 3.70165 3.73371 4.14386 4.52826 4.55793 4.78465 4.86329 5.00305 5.06074 5.25707 5.39353 5.50853 5.56457 5.58439 5.70403 5.75314 5.98997 6.01415 6.03345 6.21681 6.39826 6.52354 6.59001 6.65647 6.78734 6.82530 6.87518 6.98209 7.15488 7.33717 7.63063 7.72680 7.81516 8.26787 8.46113 8.55638 9.52316 9.84275 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.044719 B = 0.003425 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.977142 B = 8173.685253 C = 8640.967146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.430 4.430 8 H 0.088 0.912 9 C 0.070 3.930 10 C -0.143 4.143 11 C -0.118 4.118 12 C -0.015 4.015 13 C -0.015 4.015 14 C -0.107 4.107 15 C -0.120 4.120 16 C -0.060 4.060 17 C -0.107 4.107 18 C -0.173 4.173 19 C -0.181 4.181 20 C -0.157 4.157 21 C 0.105 3.895 22 F -0.120 7.120 23 N -0.437 5.437 24 C -0.013 4.013 25 H 0.287 0.713 26 H 0.128 0.872 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -10.385 3.922 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.106 0.894 9 C 0.065 3.935 10 C -0.168 4.168 11 C -0.138 4.138 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.126 4.126 15 C -0.138 4.138 16 C -0.061 4.061 17 C -0.125 4.125 18 C -0.210 4.210 19 C -0.217 4.217 20 C -0.176 4.176 21 C 0.084 3.916 22 F -0.098 7.098 23 N -0.144 5.144 24 C -0.180 4.180 25 H 0.098 0.902 26 H 0.146 0.854 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.115 -11.000 3.561 12.643 hybrid contribution 0.100 1.690 0.127 1.697 sum -5.015 -9.311 3.688 11.200 Atomic orbital electron populations 1.69780 1.07862 1.30038 1.32398 1.26108 0.94912 1.02019 0.91988 0.86090 0.80978 0.79945 0.78880 1.18006 1.19601 1.19401 1.19743 0.97473 0.90607 1.38102 0.89378 1.18667 0.92087 0.93755 0.88967 1.21327 0.98522 0.96839 1.00102 1.21272 0.99162 0.93308 1.00107 1.18644 0.97924 0.90430 1.07779 1.18845 0.95101 0.91576 0.96154 1.21037 0.95275 0.98051 0.98202 1.20717 1.00389 0.91590 1.01126 1.18733 0.95672 0.93349 0.98351 1.20945 1.03166 0.89717 0.98712 1.23029 0.97136 1.03357 0.97436 1.23064 0.97248 0.97234 1.04202 1.20815 0.98064 0.96639 1.02054 1.17673 0.87307 0.93288 0.93302 1.91530 1.52797 1.97075 1.68439 1.67115 1.06042 1.31267 1.09979 1.22520 1.02500 0.87894 1.05040 0.90207 0.85425 0.87979 0.85204 0.86095 0.87060 0.88559 0.88688 0.88650 0.88354 0.85594 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.66 10.90 55.55 0.61 -18.05 16 2 C 0.07 1.63 5.21 -17.33 -0.09 1.54 16 3 Si 0.92 17.20 29.59 -169.99 -5.03 12.17 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.43 -10.65 9.07 -37.85 -0.34 -10.99 16 8 H 0.09 2.06 7.89 -52.49 -0.41 1.64 16 9 C 0.07 1.81 5.58 -106.64 -0.59 1.21 16 10 C -0.14 -3.58 8.72 -39.01 -0.34 -3.92 16 11 C -0.12 -2.74 9.38 -39.54 -0.37 -3.11 16 12 C -0.01 -0.35 6.73 -82.76 -0.56 -0.91 16 13 C -0.02 -0.31 5.88 -104.83 -0.62 -0.93 16 14 C -0.11 -1.82 9.41 -39.19 -0.37 -2.19 16 15 C -0.12 -1.74 9.71 -39.63 -0.38 -2.12 16 16 C -0.06 -0.87 5.62 -104.53 -0.59 -1.45 16 17 C -0.11 -1.19 6.04 -91.77 -0.55 -1.75 16 18 C -0.17 -1.70 10.16 -26.73 -0.27 -1.97 16 19 C -0.18 -1.77 9.85 -26.73 -0.26 -2.03 16 20 C -0.16 -2.54 9.26 -39.56 -0.37 -2.90 16 21 C 0.10 2.08 7.28 -38.98 -0.28 1.80 16 22 F -0.12 -2.63 15.31 2.25 0.03 -2.60 16 23 N -0.44 -11.14 8.30 -9.11 -0.08 -11.22 16 24 C -0.01 -0.34 10.97 -16.77 -0.18 -0.52 16 25 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 26 H 0.13 3.20 6.24 -52.49 -0.33 2.87 16 27 H 0.10 2.04 6.17 -52.49 -0.32 1.71 16 28 H 0.13 2.03 6.17 -52.49 -0.32 1.70 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.00 6.16 -51.93 -0.32 0.68 16 35 H 0.13 1.78 5.99 -52.49 -0.31 1.47 16 36 H 0.13 3.02 8.06 -52.48 -0.42 2.60 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -27.74 309.90 -9.67 -37.40 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.69 Total: 7.87 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -6.18 Total: -30.25 kcal Atomic # 7 Polarization: -29.80 SS G_CDS: 0.53 Total: -29.27 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.03 Total: -2.60 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.74 -9.67 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244123803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.836 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds