Wall clock time and date at job start Fri Apr 10 2020 15:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86809 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47079 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46773 * 119.99907 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99955 * 3 2 1 7 7 C 1.40028 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99297 * 2.55915 * 7 2 1 9 9 C 1.41426 * 120.00304 * 182.56415 * 7 2 1 10 10 C 1.40462 * 119.77279 * 186.79145 * 9 7 2 11 11 C 1.39342 * 118.83004 * 179.79603 * 10 9 7 12 12 C 1.48337 * 120.82293 * 180.20019 * 11 10 9 13 13 C 1.39347 * 120.13987 * 310.00338 * 12 11 10 14 14 C 1.37985 * 119.90499 * 179.79412 * 13 12 11 15 15 C 1.38372 * 120.17640 * 0.46063 * 14 13 12 16 16 C 1.50699 * 119.86094 * 179.77066 * 15 14 13 17 17 C 1.52998 * 117.49946 * 8.64376 * 16 15 14 18 18 C 1.53000 * 60.00159 * 252.51060 * 17 16 15 19 19 C 1.38241 * 120.27202 * 359.79172 * 15 14 13 20 20 C 1.38290 * 120.09800 * 359.97438 * 19 15 14 21 21 F 1.35098 * 120.08797 * 179.97438 * 20 19 15 22 22 C 1.40057 * 118.34988 * 0.47375 * 11 10 9 23 23 C 1.38493 * 119.42414 * 359.74476 * 22 11 10 24 24 N 1.31484 * 121.14787 * 0.02941 * 23 22 11 25 25 H 0.96999 * 119.99757 * 174.84292 * 1 2 3 26 26 H 1.07998 * 120.59008 * 0.02562 * 10 9 7 27 27 H 1.07998 * 120.04552 * 0.02562 * 13 12 11 28 28 H 1.07994 * 119.90991 * 180.23314 * 14 13 12 29 29 H 1.09005 * 115.55054 * 154.35304 * 16 15 14 30 30 H 1.09002 * 117.50115 * 0.02562 * 17 16 15 31 31 H 1.09000 * 117.49774 * 145.02809 * 17 16 15 32 32 H 1.08999 * 117.50485 * 252.51306 * 18 17 16 33 33 H 1.08999 * 117.49853 * 107.48749 * 18 17 16 34 34 H 1.08003 * 119.94613 * 180.02562 * 19 15 14 35 35 H 1.08004 * 120.28696 * 179.73006 * 22 11 10 36 36 H 1.07997 * 119.42509 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0951 1.6965 1.2126 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 1.4684 -2.1475 -0.0427 9 6 3.4209 -1.2132 0.0543 10 6 4.1240 -2.4205 -0.0904 11 6 5.5162 -2.3978 -0.0375 12 6 6.3031 -3.6461 -0.1894 13 6 5.9856 -4.7701 0.5705 14 6 6.7180 -5.9301 0.4222 15 6 7.7729 -5.9770 -0.4720 16 6 8.5714 -7.2460 -0.6245 17 6 8.0472 -8.4994 0.0791 18 6 9.2881 -7.7831 0.6160 19 6 8.0976 -4.8646 -1.2258 20 6 7.3681 -3.6977 -1.0897 21 9 7.6859 -2.6105 -1.8261 22 6 6.1539 -1.1680 0.1685 23 6 5.3908 -0.0206 0.3069 24 7 4.0780 -0.0658 0.2489 25 1 -0.4850 -0.8367 -0.0755 26 1 3.5951 -3.3496 -0.2436 27 1 5.1650 -4.7346 1.2717 28 1 6.4696 -6.8025 1.0083 29 1 9.0648 -7.3782 -1.5875 30 1 7.1246 -8.4063 0.6520 31 1 8.1956 -9.4565 -0.4209 32 1 10.2527 -8.2689 0.4692 33 1 9.1820 -7.2186 1.5424 34 1 8.9218 -4.9072 -1.9225 35 1 7.2315 -1.1149 0.2192 36 1 5.8825 0.9277 0.4662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244124612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:32 Heat of formation + Delta-G solvation = 0.385174 kcal Electronic energy + Delta-G solvation = -20674.873122 eV Core-core repulsion = 17423.352567 eV Total energy + Delta-G solvation = -3251.520555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.92439 -40.92849 -40.15527 -37.65278 -35.83705 -34.10455 -32.38999 -31.70163 -30.36726 -27.50017 -25.62753 -24.21270 -23.30881 -23.03096 -22.69141 -21.36501 -20.26438 -18.32754 -17.65510 -17.48827 -17.07784 -16.82966 -16.46528 -16.34409 -15.90221 -15.34885 -15.04737 -14.70023 -14.63869 -14.46165 -14.13589 -14.05936 -13.57435 -13.23673 -13.01407 -12.64621 -12.63738 -12.25623 -12.00551 -11.90826 -11.67097 -11.59567 -11.33593 -11.27221 -10.58208 -9.94690 -9.90108 -9.69558 -9.31817 -9.26578 -6.87090 -0.19846 0.16191 0.62127 0.78397 1.60795 1.70413 2.05545 2.40093 2.47351 2.63626 3.06448 3.17179 3.47294 3.49387 3.65837 3.81926 3.90831 3.97444 4.05996 4.15293 4.26272 4.34317 4.46821 4.55030 4.65142 4.74253 4.82752 4.89601 5.04030 5.06712 5.11464 5.15970 5.27510 5.28937 5.31998 5.36247 5.48246 5.55281 5.75808 5.85415 5.98034 6.29957 6.59832 7.51094 7.92929 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.003939 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.435797 B = 7107.007491 C = 7678.724709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.017 3.983 3 Si 1.188 2.812 4 H -0.329 1.329 5 H -0.276 1.276 6 H -0.297 1.297 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.237 3.763 10 C -0.255 4.255 11 C 0.018 3.982 12 C -0.097 4.097 13 C -0.079 4.079 14 C -0.125 4.125 15 C -0.020 4.020 16 C -0.133 4.133 17 C -0.170 4.170 18 C -0.161 4.161 19 C -0.147 4.147 20 C 0.096 3.904 21 F -0.145 7.145 22 C -0.278 4.278 23 C 0.138 3.862 24 N -0.593 5.593 25 H 0.281 0.719 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.268 -15.313 0.340 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.200 4.200 3 Si 1.021 2.979 4 H -0.263 1.263 5 H -0.204 1.204 6 H -0.226 1.226 7 C -0.542 4.542 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.276 4.276 11 C 0.012 3.988 12 C -0.098 4.098 13 C -0.097 4.097 14 C -0.143 4.143 15 C -0.020 4.020 16 C -0.151 4.151 17 C -0.207 4.207 18 C -0.198 4.198 19 C -0.166 4.166 20 C 0.077 3.923 21 F -0.123 7.123 22 C -0.300 4.300 23 C -0.021 4.021 24 N -0.313 5.313 25 H 0.092 0.908 26 H 0.128 0.872 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 17.469 -13.035 0.470 21.801 hybrid contribution -0.039 -2.121 -0.417 2.162 sum 17.430 -15.156 0.053 23.098 Atomic orbital electron populations 1.70671 1.08420 1.32675 1.33410 1.28529 0.95566 1.07893 0.88002 0.81375 0.69815 0.67672 0.79080 1.26299 1.20352 1.22573 1.20756 0.91236 0.95896 1.46276 0.91579 1.18719 0.93848 0.88105 0.88016 1.21747 0.93249 0.98202 1.14439 1.18887 0.92332 0.92728 0.94871 1.18995 0.96518 0.94788 0.99534 1.21227 0.99429 0.91227 0.97830 1.21279 0.95435 0.97998 0.99592 1.19263 0.94703 0.93911 0.94173 1.21083 1.03651 0.91095 0.99256 1.23210 0.98606 0.95634 1.03210 1.23126 0.97609 1.02845 0.96247 1.21037 1.01566 0.90784 1.03186 1.17909 0.96328 0.84642 0.93424 1.91469 1.92038 1.53569 1.75245 1.21575 1.00025 0.92403 1.15993 1.22687 0.88907 0.98762 0.91765 1.66477 1.10881 1.28236 1.25687 0.90842 0.87171 0.84919 0.82575 0.85412 0.88070 0.86769 0.86708 0.88871 0.82520 0.85221 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.17 13.65 21.84 0.30 -46.87 16 2 C 0.02 0.95 5.52 85.29 0.47 1.42 16 3 Si 1.19 59.33 25.56 68.60 1.75 61.08 16 4 H -0.33 -16.02 7.11 99.48 0.71 -15.32 16 5 H -0.28 -13.48 6.67 99.48 0.66 -12.82 16 6 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 7 C -0.51 -29.16 9.58 23.49 0.23 -28.93 16 8 H 0.07 3.83 8.05 -2.91 -0.02 3.80 16 9 C 0.24 12.75 6.39 40.19 0.26 13.01 16 10 C -0.25 -12.19 9.37 23.08 0.22 -11.97 16 11 C 0.02 0.76 5.33 -19.88 -0.11 0.66 16 12 C -0.10 -3.37 5.52 -20.00 -0.11 -3.48 16 13 C -0.08 -2.27 9.55 22.48 0.21 -2.05 16 14 C -0.13 -2.73 9.28 22.24 0.21 -2.52 16 15 C -0.02 -0.41 5.61 -19.83 -0.11 -0.52 16 16 C -0.13 -1.84 6.04 -11.54 -0.07 -1.91 16 17 C -0.17 -1.83 9.85 30.59 0.30 -1.53 16 18 C -0.16 -1.78 10.16 30.60 0.31 -1.47 16 19 C -0.15 -3.50 9.70 22.28 0.22 -3.28 16 20 C 0.10 3.03 7.19 22.60 0.16 3.19 16 21 F -0.14 -5.00 15.97 44.97 0.72 -4.28 16 22 C -0.28 -11.36 9.00 22.77 0.21 -11.15 16 23 C 0.14 5.97 11.17 84.81 0.95 6.92 16 24 N -0.59 -30.46 4.54 -189.38 -0.86 -31.32 16 25 H 0.28 15.43 8.72 -92.71 -0.81 14.62 16 26 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 27 H 0.13 3.76 8.05 -2.91 -0.02 3.74 16 28 H 0.16 2.48 6.00 -2.91 -0.02 2.46 16 29 H 0.13 1.45 8.14 -2.38 -0.02 1.44 16 30 H 0.10 1.09 6.16 -2.39 -0.01 1.07 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.13 4.64 7.86 -2.91 -0.02 4.62 16 36 H 0.17 5.86 8.06 -2.91 -0.02 5.83 16 Total: -1.00 -65.18 311.44 6.26 -58.92 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.02 Total: 6.11 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 3.34 Total: -43.64 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -0.56 Total: -78.19 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.72 Total: -4.28 kcal Atomic # 14 Polarization: 59.33 SS G_CDS: 1.75 Total: 61.08 kcal Total: -65.18 6.26 -58.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244124612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.304 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds