Wall clock time and date at job start Fri Apr 10 2020 15:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48497 * 109.46950 * 270.00203 * 3 2 1 5 5 H 1.48498 * 109.47060 * 30.00054 * 3 2 1 6 6 H 1.48504 * 109.46922 * 150.00220 * 3 2 1 7 7 C 1.39934 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99797 * 163.65193 * 7 2 1 9 9 C 1.41437 * 120.00269 * 343.64707 * 7 2 1 10 10 C 1.40808 * 120.60318 * 155.73915 * 9 7 2 11 11 N 1.31499 * 120.66545 * 179.97438 * 10 9 7 12 12 C 1.31944 * 122.11822 * 0.02562 * 11 10 9 13 13 C 1.39673 * 121.15333 * 359.97438 * 12 11 10 14 14 C 1.48385 * 120.41209 * 180.02562 * 13 12 11 15 15 C 1.39333 * 120.13465 * 129.72028 * 14 13 12 16 16 C 1.38007 * 119.90312 * 179.79216 * 15 14 13 17 17 C 1.38351 * 120.17110 * 0.46249 * 16 15 14 18 18 C 1.50706 * 119.86466 * 179.76635 * 17 16 15 19 19 C 1.52997 * 117.49313 * 8.64556 * 18 17 16 20 20 C 1.53002 * 117.49478 * 300.02455 * 18 17 16 21 21 C 1.38249 * 120.27496 * 359.79508 * 17 16 15 22 22 C 1.38287 * 120.09142 * 359.97003 * 21 17 16 23 23 F 1.35101 * 120.08784 * 179.97438 * 22 21 17 24 24 C 1.39180 * 119.17997 * 359.97438 * 13 12 11 25 25 H 0.96994 * 119.99543 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.66778 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.42236 * 180.27077 * 12 11 10 28 28 H 1.07994 * 120.04494 * 0.02562 * 15 14 13 29 29 H 1.07997 * 119.90869 * 180.23564 * 16 15 14 30 30 H 1.08994 * 115.55076 * 154.35267 * 18 17 16 31 31 H 1.08992 * 117.50482 * 0.02562 * 19 18 17 32 32 H 1.09002 * 117.49715 * 145.02257 * 19 18 17 33 33 H 1.09002 * 117.49360 * 214.97550 * 20 18 17 34 34 H 1.09001 * 117.50291 * 359.97438 * 20 18 17 35 35 H 1.07996 * 119.95970 * 179.97438 * 21 17 16 36 36 H 1.08002 * 120.95506 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0552 -1.2307 -0.2638 9 6 1.3437 -2.4122 0.3438 10 6 1.8231 -3.6539 -0.1154 11 7 1.2067 -4.7706 0.2044 12 6 0.1247 -4.7833 0.9594 13 6 -0.4213 -3.5990 1.4594 14 6 -1.6385 -3.6324 2.3075 15 6 -1.6611 -2.9563 3.5256 16 6 -2.7972 -2.9870 4.3086 17 6 -3.9101 -3.6952 3.8915 18 6 -5.1452 -3.7284 4.7545 19 6 -5.1813 -2.8025 5.9719 20 6 -5.0075 -4.3106 6.1627 21 6 -3.8937 -4.3731 2.6867 22 6 -2.7630 -4.3458 1.8911 23 9 -2.7469 -5.0086 0.7140 24 6 0.1909 -2.3871 1.1533 25 1 -0.4849 0.8400 0.0004 26 1 2.7064 -3.6897 -0.7358 27 1 -0.3441 -5.7263 1.1988 28 1 -0.7922 -2.4059 3.8547 29 1 -2.8161 -2.4598 5.2509 30 1 -6.0827 -3.9035 4.2269 31 1 -4.3121 -2.1691 6.1485 32 1 -6.1429 -2.3681 6.2455 33 1 -5.8548 -4.8684 6.5617 34 1 -4.0238 -4.6700 6.4649 35 1 -4.7652 -4.9246 2.3664 36 1 -0.2067 -1.4543 1.5250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244124802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:27 Heat of formation + Delta-G solvation = 6.815664 kcal Electronic energy + Delta-G solvation = -20840.638603 eV Core-core repulsion = 17589.396895 eV Total energy + Delta-G solvation = -3251.241708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.87035 -40.79057 -39.94539 -37.54031 -36.00891 -33.74866 -32.30335 -31.61884 -29.89979 -27.58613 -25.33669 -24.26938 -23.37805 -22.94040 -22.65342 -21.24424 -19.37687 -18.06812 -17.69751 -17.41684 -17.13620 -16.85928 -16.70549 -16.28077 -15.93915 -15.27506 -14.95810 -14.62935 -14.31050 -14.16425 -13.70726 -13.53732 -13.37260 -13.27655 -13.15584 -12.92188 -12.76275 -12.32153 -12.19350 -12.02994 -11.69108 -11.56015 -11.24827 -11.23517 -10.33218 -10.15959 -9.85319 -9.72383 -9.05321 -8.73671 -6.50841 -0.09025 0.21931 0.78250 0.98946 1.38658 1.48477 1.55294 2.16911 2.46593 2.67428 3.11470 3.23014 3.56571 3.64650 3.76473 3.88024 4.00333 4.08671 4.10333 4.18981 4.32591 4.41059 4.55210 4.73237 4.83573 4.84616 4.92900 4.97794 5.09806 5.13644 5.14282 5.15588 5.29701 5.31753 5.41104 5.52801 5.69978 5.82486 5.91628 5.94467 6.41876 6.69720 6.70744 7.60639 8.20664 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.004798 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.006661 B = 5834.670573 C = 6910.955797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.478 4.478 8 H 0.090 0.910 9 C 0.039 3.961 10 C -0.037 4.037 11 N -0.480 5.480 12 C -0.030 4.030 13 C -0.089 4.089 14 C -0.081 4.081 15 C -0.084 4.084 16 C -0.123 4.123 17 C -0.026 4.026 18 C -0.132 4.132 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.146 4.146 22 C 0.085 3.915 23 F -0.150 7.150 24 C -0.133 4.133 25 H 0.293 0.707 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.157 0.843 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -0.293 12.205 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.178 1.178 7 C -0.507 4.507 8 H 0.108 0.892 9 C 0.035 3.965 10 C -0.198 4.198 11 N -0.187 5.187 12 C -0.187 4.187 13 C -0.091 4.091 14 C -0.083 4.083 15 C -0.103 4.103 16 C -0.140 4.140 17 C -0.026 4.026 18 C -0.150 4.150 19 C -0.206 4.206 20 C -0.197 4.197 21 C -0.164 4.164 22 C 0.066 3.934 23 F -0.128 7.128 24 C -0.159 4.159 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.173 0.827 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.759 -0.975 11.836 16.025 hybrid contribution 0.275 1.122 -0.610 1.306 sum -10.484 0.147 11.226 15.361 Atomic orbital electron populations 1.69845 1.09274 1.31235 1.34058 1.26890 0.95489 1.04880 0.90752 0.85087 0.79132 0.75164 0.79710 1.18593 1.18867 1.17795 1.19870 0.98282 0.91429 1.41075 0.89215 1.18807 0.92781 0.94530 0.90419 1.22778 1.03216 0.88142 1.05665 1.66931 1.08365 1.31836 1.11575 1.21989 0.96699 0.96152 1.03909 1.19561 0.95405 0.94789 0.99316 1.19008 0.92619 1.00195 0.96441 1.21202 0.99476 0.97348 0.92238 1.21258 0.91699 1.00069 1.01013 1.19222 0.95069 0.95036 0.93319 1.21053 0.95886 1.08340 0.89725 1.23203 1.04594 0.93249 0.99525 1.23124 1.04059 0.96576 0.95981 1.21009 0.97131 1.03130 0.95172 1.17992 0.95713 0.96551 0.83141 1.91449 1.97021 1.78653 1.45701 1.21751 0.98273 0.95977 0.99856 0.89598 0.84335 0.85203 0.85263 0.82535 0.85514 0.88147 0.86681 0.86627 0.88922 0.82678 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.59 10.90 21.82 0.24 -41.35 16 2 C 0.04 1.75 5.20 85.25 0.44 2.19 16 3 Si 0.99 36.16 29.59 68.60 2.03 38.19 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.48 -24.96 9.09 23.47 0.21 -24.75 16 8 H 0.09 4.42 7.90 -2.91 -0.02 4.40 16 9 C 0.04 2.13 5.59 -21.22 -0.12 2.01 16 10 C -0.04 -1.98 10.96 85.37 0.94 -1.04 16 11 N -0.48 -25.42 10.32 -192.77 -1.99 -27.41 16 12 C -0.03 -1.51 10.04 85.02 0.85 -0.66 16 13 C -0.09 -4.36 5.32 -20.00 -0.11 -4.47 16 14 C -0.08 -3.34 5.49 -20.00 -0.11 -3.45 16 15 C -0.08 -2.89 9.54 22.48 0.21 -2.68 16 16 C -0.12 -3.23 9.28 22.24 0.21 -3.02 16 17 C -0.03 -0.65 5.61 -19.83 -0.11 -0.76 16 18 C -0.13 -2.27 6.04 -11.54 -0.07 -2.34 16 19 C -0.17 -2.28 9.85 30.59 0.30 -1.98 16 20 C -0.16 -2.20 10.16 30.60 0.31 -1.89 16 21 C -0.15 -4.22 9.70 22.28 0.22 -4.00 16 22 C 0.09 3.22 7.17 22.59 0.16 3.38 16 23 F -0.15 -6.23 15.92 44.97 0.72 -5.51 16 24 C -0.13 -7.06 8.30 23.14 0.19 -6.87 16 25 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 26 H 0.14 6.77 8.06 -2.91 -0.02 6.75 16 27 H 0.13 6.08 7.79 -2.91 -0.02 6.06 16 28 H 0.13 4.37 8.05 -2.91 -0.02 4.35 16 29 H 0.16 3.08 6.00 -2.91 -0.02 3.07 16 30 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.10 1.36 6.16 -2.39 -0.01 1.35 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.12 6.60 6.20 -2.91 -0.02 6.59 16 Total: -1.00 -63.12 314.45 5.63 -57.49 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 1.11 Total: 28.91 kcal Atomic # 6 Polarization: -53.85 SS G_CDS: 3.53 Total: -50.31 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.75 Total: -68.76 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.72 Total: -5.51 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -63.12 5.63 -57.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244124802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.305 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds