Wall clock time and date at job start Fri Apr 10 2020 15:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86801 * 119.99532 * 2 1 4 4 H 1.48502 * 109.46886 * 239.99938 * 3 2 1 5 5 H 1.48505 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47281 * 119.99896 * 3 2 1 7 7 C 1.39909 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00166 * 162.90710 * 7 2 1 9 9 C 1.41328 * 120.00034 * 342.90607 * 7 2 1 10 10 C 1.40540 * 120.20725 * 334.68664 * 9 7 2 11 11 C 1.38664 * 119.65902 * 180.02562 * 10 9 7 12 12 C 1.48390 * 119.96677 * 179.97438 * 11 10 9 13 13 C 1.39341 * 120.54103 * 310.24540 * 12 11 10 14 14 N 1.31717 * 120.59977 * 180.25847 * 13 12 11 15 15 C 1.31922 * 121.84783 * 359.75240 * 14 13 12 16 16 C 1.38262 * 121.03276 * 359.97438 * 15 14 13 17 17 C 1.38459 * 119.28275 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.84186 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.50055 * 8.62126 * 18 17 16 20 20 C 1.52997 * 60.00349 * 252.51106 * 19 18 17 21 21 C 1.39820 * 120.06878 * 0.27287 * 11 10 9 22 22 C 1.38237 * 120.41951 * 359.44004 * 21 11 10 23 23 C 1.38064 * 120.34978 * 0.56144 * 22 21 11 24 24 F 1.35095 * 120.04641 * 179.74037 * 23 22 21 25 25 H 0.96996 * 120.00274 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.17012 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.70076 * 359.97438 * 13 12 11 28 28 H 1.08007 * 119.48202 * 179.97438 * 15 14 13 29 29 H 1.07995 * 120.35956 * 180.02562 * 16 15 14 30 30 H 1.09001 * 115.54651 * 154.33356 * 18 17 16 31 31 H 1.09004 * 117.49891 * 0.02562 * 19 18 17 32 32 H 1.08998 * 117.49858 * 145.02070 * 19 18 17 33 33 H 1.09000 * 117.50340 * 252.51243 * 20 19 18 34 34 H 1.08999 * 117.49769 * 107.48556 * 20 19 18 35 35 H 1.08003 * 119.79115 * 179.71018 * 21 11 10 36 36 H 1.08006 * 119.82607 * 180.25959 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6966 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0524 -1.2323 -0.2743 9 6 1.3485 -2.4084 0.3608 10 6 0.2207 -2.3695 1.1986 11 6 -0.4175 -3.5507 1.5453 12 6 -1.6085 -3.5176 2.4298 13 6 -1.5808 -2.8074 3.6283 14 7 -2.6356 -2.7815 4.4168 15 6 -3.7512 -3.4143 4.1081 16 6 -3.8596 -4.1363 2.9340 17 6 -2.7776 -4.1938 2.0719 18 6 -2.8570 -4.9709 0.7831 19 6 -4.2253 -5.5174 0.3708 20 6 -3.1422 -6.4711 0.8791 21 6 0.0637 -4.7734 1.0674 22 6 1.1692 -4.8147 0.2385 23 6 1.8180 -3.6493 -0.1177 24 9 2.9010 -3.6972 -0.9239 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1464 -1.4246 1.5710 27 1 -0.6849 -2.2772 3.9156 28 1 -4.5931 -3.3677 4.7831 29 1 -4.7782 -4.6500 2.6919 30 1 -2.1888 -4.6354 -0.0100 31 1 -5.0682 -5.3145 1.0315 32 1 -4.4576 -5.5414 -0.6939 33 1 -2.6620 -7.1224 0.1490 34 1 -3.2725 -6.8958 1.8745 35 1 -0.4341 -5.6911 1.3441 36 1 1.5303 -5.7642 -0.1285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244282553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:09 Heat of formation + Delta-G solvation = 21.320876 kcal Electronic energy + Delta-G solvation = -21302.609920 eV Core-core repulsion = 18051.997206 eV Total energy + Delta-G solvation = -3250.612715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.30915 -40.12113 -37.36410 -36.98544 -33.99161 -32.15972 -31.15102 -29.89506 -28.02949 -25.55831 -24.29829 -23.20167 -22.25866 -21.33645 -20.44721 -20.05712 -17.53466 -16.66176 -16.21176 -15.96683 -15.38998 -15.01471 -14.74389 -14.49993 -14.07336 -13.94371 -13.57687 -13.41984 -12.97121 -12.70035 -12.10344 -11.87132 -11.76222 -11.56660 -11.49494 -11.31256 -11.14016 -10.94288 -10.79795 -10.54080 -10.26574 -10.05666 -9.69620 -9.36749 -9.11569 -8.91127 -8.66204 -7.70776 -7.23651 -6.90608 -4.52249 1.38463 1.54818 2.58057 2.68402 3.01077 3.03363 3.10126 3.83563 3.88952 4.26668 4.44436 4.66216 4.79508 4.95477 5.09068 5.16956 5.29300 5.36595 5.46085 5.58218 5.69049 5.82337 5.88992 5.91296 6.07955 6.10679 6.16594 6.22830 6.41159 6.46690 6.72250 6.78862 6.96866 7.01016 7.10433 7.35392 7.46313 7.75090 7.83187 7.94506 8.32457 8.39334 8.61941 8.69054 10.01343 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.005973 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.213536 B = 4686.647828 C = 5706.772528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.120 4.120 11 C -0.053 4.053 12 C -0.052 4.052 13 C 0.106 3.894 14 N -0.490 5.490 15 C 0.079 3.921 16 C -0.177 4.177 17 C -0.006 4.006 18 C -0.108 4.108 19 C -0.180 4.180 20 C -0.166 4.166 21 C -0.196 4.196 22 C -0.124 4.124 23 C -0.024 4.024 24 F -0.163 7.163 25 H 0.285 0.715 26 H 0.129 0.871 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 -6.032 2.982 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.081 3.919 10 C -0.140 4.140 11 C -0.055 4.055 12 C -0.054 4.054 13 C -0.051 4.051 14 N -0.198 5.198 15 C -0.077 4.077 16 C -0.197 4.197 17 C -0.014 4.014 18 C -0.126 4.126 19 C -0.217 4.217 20 C -0.203 4.203 21 C -0.216 4.216 22 C -0.143 4.143 23 C -0.045 4.045 24 F -0.142 7.142 25 H 0.096 0.904 26 H 0.147 0.853 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.349 -5.385 3.727 9.843 hybrid contribution 0.407 0.277 -1.054 1.163 sum -6.941 -5.108 2.673 9.023 Atomic orbital electron populations 1.69790 1.07583 1.29876 1.33919 1.25915 0.94788 1.01523 0.92028 0.86276 0.80137 0.79681 0.80256 1.18803 1.20141 1.18553 1.19487 0.98210 0.90797 1.39607 0.89813 1.17526 0.92428 0.91038 0.90877 1.21257 0.97229 0.96240 0.99244 1.18289 0.94184 0.94245 0.98741 1.19865 0.93922 0.96327 0.95308 1.22931 0.96474 0.95752 0.89952 1.67581 1.00087 1.18942 1.33189 1.22551 0.95704 0.94321 0.95150 1.21853 0.99261 1.02485 0.96066 1.19551 0.92521 0.95252 0.94030 1.21087 0.99839 0.94771 0.96943 1.23061 0.92459 1.04411 1.01764 1.22971 1.02790 0.91925 1.02632 1.20181 1.00069 0.95660 1.05648 1.20409 0.97426 0.95719 1.00704 1.17938 0.90785 0.94859 1.00881 1.91275 1.53526 1.97328 1.72056 0.90402 0.85306 0.82656 0.83494 0.85390 0.85523 0.88711 0.88503 0.88395 0.88923 0.88068 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.51 10.97 55.55 0.61 -18.90 16 2 C 0.08 1.85 5.15 -17.34 -0.09 1.77 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.45 -11.75 8.77 -37.78 -0.33 -12.08 16 8 H 0.08 2.16 7.74 -52.49 -0.41 1.75 16 9 C 0.08 2.18 5.57 -106.79 -0.59 1.58 16 10 C -0.12 -2.90 8.14 -38.56 -0.31 -3.22 16 11 C -0.05 -1.15 4.91 -104.97 -0.52 -1.66 16 12 C -0.05 -1.00 5.48 -104.75 -0.57 -1.57 16 13 C 0.11 1.97 10.67 -17.19 -0.18 1.78 16 14 N -0.49 -8.57 10.35 -12.97 -0.13 -8.71 16 15 C 0.08 1.17 11.17 -17.50 -0.20 0.98 16 16 C -0.18 -2.54 9.38 -39.49 -0.37 -2.91 16 17 C -0.01 -0.10 5.63 -103.98 -0.59 -0.68 16 18 C -0.11 -1.65 4.26 -91.77 -0.39 -2.04 16 19 C -0.18 -2.14 9.88 -26.73 -0.26 -2.40 16 20 C -0.17 -2.03 10.07 -26.73 -0.27 -2.29 16 21 C -0.20 -4.01 7.93 -38.99 -0.31 -4.32 16 22 C -0.12 -2.67 9.99 -39.65 -0.40 -3.06 16 23 C -0.02 -0.60 7.31 -38.58 -0.28 -0.88 16 24 F -0.16 -4.02 16.71 2.25 0.04 -3.98 16 25 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 26 H 0.13 3.22 6.17 -52.48 -0.32 2.90 16 27 H 0.16 2.79 8.04 -52.49 -0.42 2.37 16 28 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.13 1.46 6.16 -52.49 -0.32 1.14 16 30 H 0.13 2.23 6.75 -51.93 -0.35 1.88 16 31 H 0.09 1.00 6.26 -51.93 -0.33 0.68 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.86 7.22 -52.48 -0.38 1.48 16 36 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -26.94 310.41 -9.28 -36.22 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.78 Total: 8.49 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -5.66 Total: -31.02 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.47 Total: -27.61 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.94 -9.28 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244282553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.544 kcal (2) G-P(sol) polarization free energy of solvation -26.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds