Wall clock time and date at job start Fri Apr 10 2020 15:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86801 * 119.99532 * 2 1 4 4 H 1.48502 * 109.46886 * 239.99938 * 3 2 1 5 5 H 1.48505 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47281 * 119.99896 * 3 2 1 7 7 C 1.39909 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00166 * 162.90710 * 7 2 1 9 9 C 1.41328 * 120.00034 * 342.90607 * 7 2 1 10 10 C 1.40540 * 120.20725 * 334.68664 * 9 7 2 11 11 C 1.38664 * 119.65902 * 180.02562 * 10 9 7 12 12 C 1.48390 * 119.96677 * 179.97438 * 11 10 9 13 13 C 1.39341 * 120.54103 * 310.24540 * 12 11 10 14 14 N 1.31717 * 120.59977 * 180.25847 * 13 12 11 15 15 C 1.31922 * 121.84783 * 359.75240 * 14 13 12 16 16 C 1.38262 * 121.03276 * 359.97438 * 15 14 13 17 17 C 1.38459 * 119.28275 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.84186 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.50055 * 8.62126 * 18 17 16 20 20 C 1.52997 * 60.00349 * 252.51106 * 19 18 17 21 21 C 1.39820 * 120.06878 * 0.27287 * 11 10 9 22 22 C 1.38237 * 120.41951 * 359.44004 * 21 11 10 23 23 C 1.38064 * 120.34978 * 0.56144 * 22 21 11 24 24 F 1.35095 * 120.04641 * 179.74037 * 23 22 21 25 25 H 0.96996 * 120.00274 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.17012 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.70076 * 359.97438 * 13 12 11 28 28 H 1.08007 * 119.48202 * 179.97438 * 15 14 13 29 29 H 1.07995 * 120.35956 * 180.02562 * 16 15 14 30 30 H 1.09001 * 115.54651 * 154.33356 * 18 17 16 31 31 H 1.09004 * 117.49891 * 0.02562 * 19 18 17 32 32 H 1.08998 * 117.49858 * 145.02070 * 19 18 17 33 33 H 1.09000 * 117.50340 * 252.51243 * 20 19 18 34 34 H 1.08999 * 117.49769 * 107.48556 * 20 19 18 35 35 H 1.08003 * 119.79115 * 179.71018 * 21 11 10 36 36 H 1.08006 * 119.82607 * 180.25959 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6966 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0524 -1.2323 -0.2743 9 6 1.3485 -2.4084 0.3608 10 6 0.2207 -2.3695 1.1986 11 6 -0.4175 -3.5507 1.5453 12 6 -1.6085 -3.5176 2.4298 13 6 -1.5808 -2.8074 3.6283 14 7 -2.6356 -2.7815 4.4168 15 6 -3.7512 -3.4143 4.1081 16 6 -3.8596 -4.1363 2.9340 17 6 -2.7776 -4.1938 2.0719 18 6 -2.8570 -4.9709 0.7831 19 6 -4.2253 -5.5174 0.3708 20 6 -3.1422 -6.4711 0.8791 21 6 0.0637 -4.7734 1.0674 22 6 1.1692 -4.8147 0.2385 23 6 1.8180 -3.6493 -0.1177 24 9 2.9010 -3.6972 -0.9239 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1464 -1.4246 1.5710 27 1 -0.6849 -2.2772 3.9156 28 1 -4.5931 -3.3677 4.7831 29 1 -4.7782 -4.6500 2.6919 30 1 -2.1888 -4.6354 -0.0100 31 1 -5.0682 -5.3145 1.0315 32 1 -4.4576 -5.5414 -0.6939 33 1 -2.6620 -7.1224 0.1490 34 1 -3.2725 -6.8958 1.8745 35 1 -0.4341 -5.6911 1.3441 36 1 1.5303 -5.7642 -0.1285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244282553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:08 Heat of formation + Delta-G solvation = 9.398308 kcal Electronic energy + Delta-G solvation = -21303.126922 eV Core-core repulsion = 18051.997206 eV Total energy + Delta-G solvation = -3251.129716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.22998 -41.42166 -39.08193 -38.08954 -35.78918 -33.65118 -32.39127 -31.72329 -29.62295 -27.37642 -25.56555 -24.62290 -23.24901 -23.08013 -21.87935 -21.47260 -19.29580 -18.01546 -17.89936 -17.47695 -16.93684 -16.60379 -16.25897 -15.98114 -15.81140 -15.24605 -14.86153 -14.68357 -14.56697 -14.43129 -13.81623 -13.49985 -13.45424 -13.07004 -12.84526 -12.74756 -12.47879 -12.33316 -12.20117 -11.99371 -11.77127 -11.48856 -11.27844 -11.15178 -10.45556 -10.10744 -10.06441 -9.54536 -8.96569 -8.71166 -6.45982 -0.00002 0.28592 0.85512 0.91575 1.34457 1.45209 1.48598 2.15627 2.57289 2.75902 3.15495 3.46472 3.52927 3.55524 3.87179 3.89435 4.00314 4.07684 4.16408 4.26764 4.34469 4.39852 4.64334 4.71676 4.78521 4.85578 4.94637 4.95893 5.08409 5.11801 5.20305 5.28173 5.29301 5.43177 5.56015 5.68305 5.82175 5.95611 5.98505 6.11850 6.48814 6.73633 6.81864 7.05648 8.21336 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.005973 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.213536 B = 4686.647828 C = 5706.772528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.041 3.959 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.071 0.929 9 C 0.057 3.943 10 C -0.140 4.140 11 C -0.042 4.042 12 C -0.088 4.088 13 C 0.093 3.907 14 N -0.509 5.509 15 C 0.086 3.914 16 C -0.168 4.168 17 C -0.003 4.003 18 C -0.144 4.144 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.180 4.180 22 C -0.119 4.119 23 C -0.057 4.057 24 F -0.170 7.170 25 H 0.291 0.709 26 H 0.112 0.888 27 H 0.144 0.856 28 H 0.189 0.811 29 H 0.169 0.831 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 -7.534 3.749 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.090 0.910 9 C 0.054 3.946 10 C -0.159 4.159 11 C -0.043 4.043 12 C -0.090 4.090 13 C -0.063 4.063 14 N -0.218 5.218 15 C -0.070 4.070 16 C -0.187 4.187 17 C -0.011 4.011 18 C -0.163 4.163 19 C -0.195 4.195 20 C -0.187 4.187 21 C -0.200 4.200 22 C -0.138 4.138 23 C -0.078 4.078 24 F -0.149 7.149 25 H 0.102 0.898 26 H 0.129 0.871 27 H 0.161 0.839 28 H 0.206 0.794 29 H 0.186 0.814 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.058 -6.905 4.492 13.001 hybrid contribution 1.065 0.574 -1.235 1.729 sum -8.993 -6.331 3.257 11.470 Atomic orbital electron populations 1.69838 1.08783 1.30987 1.34457 1.26684 0.95524 1.04309 0.91022 0.85264 0.78920 0.75555 0.80166 1.18560 1.18656 1.18268 1.19635 0.98038 0.92353 1.42239 0.91038 1.17873 0.93394 0.91768 0.91603 1.21147 0.97866 0.96744 1.00187 1.18530 0.94361 0.93577 0.97801 1.19803 0.94355 0.99141 0.95681 1.22799 0.96961 0.96085 0.90434 1.67621 1.00713 1.20126 1.33306 1.23310 0.95571 0.92389 0.95764 1.22228 0.99694 1.01777 0.95003 1.19804 0.92114 0.94308 0.94898 1.20955 1.02480 0.97117 0.95715 1.23207 0.91407 1.02030 1.02885 1.23084 1.02075 0.89894 1.03623 1.20503 0.99068 0.96369 1.04020 1.20734 0.97062 0.95904 1.00117 1.18260 0.91579 0.95745 1.02166 1.91236 1.53940 1.97386 1.72385 0.89778 0.87050 0.83879 0.79426 0.81407 0.88820 0.86612 0.87607 0.87527 0.87652 0.85226 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.31 10.97 21.82 0.24 -42.07 16 2 C 0.04 2.07 5.15 85.24 0.44 2.50 16 3 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.49 -27.31 8.77 23.44 0.21 -27.10 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.06 3.09 5.57 -21.27 -0.12 2.97 16 10 C -0.14 -7.16 8.14 22.93 0.19 -6.97 16 11 C -0.04 -1.83 4.91 -20.09 -0.10 -1.93 16 12 C -0.09 -3.36 5.48 -19.95 -0.11 -3.47 16 13 C 0.09 3.52 10.67 84.98 0.91 4.42 16 14 N -0.51 -17.18 10.35 -194.95 -2.02 -19.19 16 15 C 0.09 2.25 11.17 84.69 0.95 3.19 16 16 C -0.17 -4.15 9.38 22.33 0.21 -3.94 16 17 C 0.00 -0.11 5.63 -19.45 -0.11 -0.22 16 18 C -0.14 -4.06 4.26 -11.54 -0.05 -4.11 16 19 C -0.16 -3.11 9.88 30.59 0.30 -2.80 16 20 C -0.15 -3.06 10.07 30.60 0.31 -2.75 16 21 C -0.18 -7.33 7.93 22.65 0.18 -7.15 16 22 C -0.12 -5.17 9.99 22.23 0.22 -4.95 16 23 C -0.06 -2.94 7.31 22.92 0.17 -2.77 16 24 F -0.17 -8.78 16.71 44.97 0.75 -8.03 16 25 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 26 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 27 H 0.14 5.51 8.04 -2.91 -0.02 5.49 16 28 H 0.19 3.29 8.06 -2.91 -0.02 3.26 16 29 H 0.17 2.79 6.16 -2.91 -0.02 2.77 16 30 H 0.09 3.27 6.75 -2.39 -0.02 3.25 16 31 H 0.12 1.78 6.26 -2.38 -0.01 1.77 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.13 4.50 7.22 -2.91 -0.02 4.48 16 36 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -62.53 310.41 5.70 -56.82 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 1.11 Total: 26.86 kcal Atomic # 6 Polarization: -58.66 SS G_CDS: 3.59 Total: -55.07 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -1.78 Total: -61.27 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.75 Total: -8.03 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -62.53 5.70 -56.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244282553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.223 kcal (2) G-P(sol) polarization free energy of solvation -62.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds