Wall clock time and date at job start Fri Apr 10 2020 15:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30075 * 126.20668 * 2 1 4 4 N 1.28656 * 109.55782 * 179.82651 * 3 2 1 5 5 C 1.31139 * 109.31393 * 0.44325 * 4 3 2 6 6 S 1.76204 * 126.38154 * 179.71012 * 5 4 3 7 7 C 1.81001 * 99.99844 * 0.02562 * 6 5 4 8 8 H 1.09002 * 109.46777 * 55.00408 * 7 6 5 9 9 C 1.52991 * 109.47305 * 294.99944 * 7 6 5 10 10 C 1.50698 * 109.46792 * 174.99801 * 7 6 5 11 11 O 1.21277 * 120.00138 * 25.00409 * 10 7 6 12 12 N 1.34776 * 119.99716 * 204.99831 * 10 7 6 13 13 C 1.46498 * 120.00410 * 0.02562 * 12 10 7 14 14 C 1.46502 * 119.99951 * 180.02562 * 12 10 7 15 15 C 1.50697 * 109.47124 * 90.00202 * 14 12 10 16 16 H 1.07999 * 120.00141 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99939 * 179.97438 * 15 14 12 18 18 N 1.31513 * 120.00120 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99900 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47148 * 90.00140 * 19 17 15 21 21 H 1.48499 * 109.47570 * 210.00050 * 19 17 15 22 22 H 1.48506 * 109.47115 * 330.00479 * 19 17 15 23 23 O 1.34640 * 107.24026 * 359.73180 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.68952 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69053 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69034 * 1 2 3 27 27 H 1.09007 * 109.47311 * 300.00324 * 9 7 6 28 28 H 1.09006 * 109.47465 * 60.00019 * 9 7 6 29 29 H 1.09003 * 109.47474 * 179.97438 * 9 7 6 30 30 H 1.09002 * 109.47077 * 89.99663 * 13 12 10 31 31 H 1.09000 * 109.47468 * 209.99921 * 13 12 10 32 32 H 1.09005 * 109.46969 * 330.00222 * 13 12 10 33 33 H 1.08998 * 109.47232 * 210.00288 * 14 12 10 34 34 H 1.09002 * 109.47210 * 330.00082 * 14 12 10 35 35 H 0.96998 * 120.00109 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0496 0.0000 4 7 3.5080 0.6810 0.0037 5 6 3.5690 -0.6290 -0.0034 6 16 5.0347 -1.6070 -0.0093 7 6 6.2855 -0.2988 -0.0019 8 1 6.1106 0.3663 0.8438 9 6 6.1972 0.4986 -1.3046 10 6 7.6557 -0.9146 0.1182 11 8 7.8432 -2.0538 -0.2531 12 7 8.6727 -0.1992 0.6382 13 6 8.4461 1.1767 1.0872 14 6 10.0048 -0.7976 0.7545 15 6 10.7893 -0.5255 -0.5030 16 1 10.3404 0.0366 -1.3085 17 6 12.0803 -0.9941 -0.6253 18 7 12.6268 -1.6790 0.3554 19 14 13.0524 -0.6573 -2.1844 20 1 13.7945 0.6208 -2.0387 21 1 14.0143 -1.7645 -2.4169 22 1 12.1212 -0.5603 -3.3371 23 8 2.3031 -1.0874 -0.0059 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 6.3720 -0.1665 -2.1504 28 1 5.2061 0.9441 -1.3915 29 1 6.9501 1.2868 -1.3000 30 1 8.1528 1.1727 2.1370 31 1 9.3634 1.7535 0.9684 32 1 7.6534 1.6278 0.4903 33 1 10.5249 -0.3634 1.6083 34 1 9.9085 -1.8740 0.8969 35 1 13.5349 -2.0090 0.2692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008245741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:49 Heat of formation + Delta-G solvation = 13.355020 kcal Electronic energy + Delta-G solvation = -19976.556637 eV Core-core repulsion = 16717.817836 eV Total energy + Delta-G solvation = -3258.738800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.23283 -39.30417 -36.34012 -35.03038 -33.58792 -32.97131 -32.27502 -28.70456 -27.84906 -26.10121 -24.49427 -24.18394 -22.91542 -22.41987 -19.40088 -18.13815 -17.65669 -16.80117 -16.59740 -16.55851 -15.59672 -14.97475 -14.79855 -14.50440 -14.11149 -13.72922 -13.48727 -13.19062 -13.12205 -12.65597 -12.42444 -12.19753 -12.18066 -11.93775 -11.91144 -11.70591 -11.33940 -11.25440 -10.94787 -10.64568 -10.43790 -10.40761 -10.21270 -9.70730 -9.19303 -8.48691 -7.96687 -7.80689 -6.09787 -4.15022 0.43407 0.84405 1.72553 2.12638 2.58008 3.11800 3.27774 3.34818 3.39347 3.73400 3.97724 4.39805 4.66388 4.73740 4.80167 4.85947 4.88472 5.02190 5.07431 5.21247 5.25187 5.51022 5.52248 5.70571 5.78348 5.84456 6.10805 6.23785 6.89203 7.31759 7.38711 7.85336 8.01912 8.14572 8.18263 8.70511 8.91027 9.50206 10.98466 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040712 B = 0.003500 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.589275 B = 7999.043165 C = 8059.198286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.154 3.846 3 N -0.279 5.279 4 N -0.292 5.292 5 C 0.129 3.871 6 S 0.135 5.865 7 C -0.120 4.120 8 H 0.123 0.877 9 C -0.145 4.145 10 C 0.527 3.473 11 O -0.526 6.526 12 N -0.588 5.588 13 C 0.074 3.926 14 C 0.245 3.755 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.208 6.208 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.383 4.691 0.977 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 N -0.126 5.126 4 N -0.144 5.144 5 C -0.187 4.187 6 S 0.365 5.635 7 C -0.253 4.253 8 H 0.141 0.859 9 C -0.204 4.204 10 C 0.310 3.690 11 O -0.403 6.403 12 N -0.319 5.319 13 C -0.070 4.070 14 C 0.126 3.874 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 O -0.090 6.090 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.541 4.043 0.856 20.953 hybrid contribution 0.118 0.473 -0.736 0.882 sum -20.423 4.516 0.120 20.917 Atomic orbital electron populations 1.20330 0.80147 1.05645 1.05166 1.28057 0.97843 0.79411 1.00870 1.74087 0.96193 1.25662 1.16684 1.74876 1.12128 1.07452 1.19960 1.30489 0.90221 0.95131 1.02896 1.86719 0.84280 1.02647 1.89878 1.23892 0.95595 1.00123 1.05654 0.85942 1.22041 1.04244 1.00290 0.93780 1.19195 0.84048 0.86359 0.79378 1.90730 1.83297 1.17777 1.48544 1.48069 1.11284 1.13323 1.59247 1.21828 1.02732 0.83797 0.98666 1.19404 0.75326 0.95242 0.97379 1.21402 0.98125 1.35356 1.01932 0.92305 1.24933 0.97537 0.94811 0.96753 1.69927 1.15025 1.36349 1.31948 0.86477 0.79718 0.77823 0.83308 1.20597 1.21039 1.19821 1.84980 1.15612 1.37663 1.70706 0.88387 0.88904 0.87580 0.90752 0.90114 0.90222 0.93235 0.90133 0.91910 0.94497 0.93553 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.15 1.69 8.48 -13.02 -0.11 1.58 16 3 N -0.28 -3.86 12.20 32.60 0.40 -3.46 16 4 N -0.29 -4.37 9.76 30.29 0.30 -4.07 16 5 C 0.13 1.85 8.22 52.47 0.43 2.28 16 6 S 0.14 2.02 21.07 -107.50 -2.26 -0.24 16 7 C -0.12 -1.87 1.84 -27.89 -0.05 -1.92 16 8 H 0.12 1.70 6.92 -51.92 -0.36 1.34 16 9 C -0.14 -2.07 8.77 37.15 0.33 -1.75 16 10 C 0.53 10.67 6.79 -10.99 -0.07 10.59 16 11 O -0.53 -12.74 15.71 5.56 0.09 -12.65 16 12 N -0.59 -12.10 2.86 -182.95 -0.52 -12.62 16 13 C 0.07 1.14 9.87 59.85 0.59 1.73 16 14 C 0.25 6.24 5.16 -5.19 -0.03 6.22 16 15 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 16 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 19 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 O -0.21 -2.70 10.90 3.50 0.04 -2.66 16 24 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 28 H 0.08 1.11 5.91 -51.93 -0.31 0.80 16 29 H 0.08 1.09 6.84 -51.93 -0.36 0.73 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.06 0.82 5.17 -51.93 -0.27 0.55 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -33.75 316.38 -4.61 -38.36 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.17 Total: -4.03 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 1.04 Total: 5.48 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.91 Total: -45.58 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.13 Total: -15.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.26 Total: -0.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.75 -4.61 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008245741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.719 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds