Wall clock time and date at job start Fri Apr 10 2020 15:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46757 * 2 1 4 4 C 1.52995 * 109.47391 * 120.00153 * 2 1 3 5 5 N 1.46505 * 109.47302 * 64.99979 * 4 2 1 6 6 C 1.46506 * 119.99918 * 264.17795 * 5 4 2 7 7 C 1.50699 * 109.46874 * 262.17373 * 6 5 4 8 8 H 1.08006 * 119.99869 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00284 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99501 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00298 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47280 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46908 * 119.99854 * 11 9 7 14 14 H 1.48499 * 109.47317 * 240.00076 * 11 9 7 15 15 C 1.34770 * 120.00131 * 84.17163 * 5 4 2 16 16 O 1.21639 * 119.99531 * 1.30334 * 15 5 4 17 17 C 1.47204 * 120.00214 * 181.30352 * 15 5 4 18 18 C 1.47084 * 127.20988 * 351.44462 * 17 15 5 19 19 C 1.34112 * 105.98007 * 179.97438 * 18 17 15 20 20 O 1.34295 * 109.17823 * 359.97438 * 19 18 17 21 21 C 1.33683 * 110.91203 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 125.82816 * 180.26098 * 21 20 19 23 23 H 1.08998 * 109.47235 * 299.99957 * 1 2 3 24 24 H 1.08997 * 109.47520 * 60.00315 * 1 2 3 25 25 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46921 * 240.00411 * 2 1 3 27 27 H 1.09009 * 109.46959 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47350 * 299.99987 * 3 2 1 29 29 H 1.08998 * 109.47213 * 60.00030 * 3 2 1 30 30 H 1.09001 * 109.46932 * 305.00095 * 4 2 1 31 31 H 1.08997 * 109.47204 * 185.00075 * 4 2 1 32 32 H 1.08998 * 109.47420 * 22.16892 * 6 5 4 33 33 H 1.08999 * 109.46877 * 142.17425 * 6 5 4 34 34 H 0.97009 * 119.99735 * 180.02562 * 10 9 7 35 35 H 1.08008 * 127.00817 * 0.02562 * 18 17 15 36 36 H 1.08000 * 125.41517 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.4378 -2.5879 1.8715 7 6 0.8030 -3.1783 3.2091 8 1 1.8365 -3.2109 3.5209 9 6 -0.1822 -3.6768 4.0348 10 7 -1.4406 -3.6376 3.6548 11 14 0.2705 -4.4093 5.6924 12 1 1.7416 -4.3352 5.8812 13 1 -0.4056 -3.6460 6.7721 14 1 -0.1645 -5.8282 5.7422 15 6 2.4134 -3.0129 0.5100 16 8 3.4344 -2.6395 -0.0355 17 6 2.0088 -4.4258 0.4270 18 6 0.9155 -5.0825 1.1596 19 6 0.9234 -6.3639 0.7642 20 8 1.9086 -6.5434 -0.1306 21 6 2.5698 -5.4019 -0.3477 22 17 3.9077 -5.1934 -1.4341 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6443 1.2951 32 1 -0.2345 -1.7427 2.0188 33 1 -0.0578 -3.3447 1.2634 34 1 -2.1339 -3.9881 4.2359 35 1 0.2428 -4.6256 1.8705 36 1 0.2449 -7.1298 1.1097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232596955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:05 Heat of formation + Delta-G solvation = -28.278466 kcal Electronic energy + Delta-G solvation = -21197.653201 eV Core-core repulsion = 17902.772580 eV Total energy + Delta-G solvation = -3294.880621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.51139 -40.67581 -38.07251 -37.51106 -36.10678 -34.19369 -33.55683 -30.49885 -29.52872 -27.98540 -27.42056 -25.14564 -23.57022 -22.63356 -21.16905 -20.33113 -18.81427 -18.29618 -17.62570 -17.34570 -17.08873 -16.37981 -15.96865 -15.93833 -15.27054 -14.75988 -14.52716 -14.40919 -14.22740 -13.84290 -13.61514 -13.18196 -13.08526 -12.96151 -12.78338 -12.65885 -12.27534 -12.24807 -12.10197 -11.95239 -11.75501 -11.54949 -11.45901 -10.85683 -10.80786 -10.47057 -9.66782 -9.31821 -8.18575 -6.30463 0.05598 0.16036 1.23472 1.41084 1.46985 1.55768 2.26280 2.35947 2.46624 2.57888 3.10379 3.70564 3.90010 4.00610 4.05670 4.21101 4.45019 4.53588 4.66086 4.73281 4.81863 4.91130 4.96064 4.99926 5.03184 5.08801 5.22158 5.29301 5.43503 5.46818 5.58483 5.71126 5.86207 5.95223 6.08962 6.53366 6.82623 7.29328 7.40946 8.84788 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.008979 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.588349 B = 3117.593957 C = 5072.315026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.233 3.767 7 C -0.537 4.537 8 H 0.044 0.956 9 C 0.036 3.964 10 N -0.908 5.908 11 Si 0.943 3.057 12 H -0.281 1.281 13 H -0.280 1.280 14 H -0.270 1.270 15 C 0.576 3.424 16 O -0.579 6.579 17 C -0.215 4.215 18 C -0.192 4.192 19 C -0.035 4.035 20 O -0.171 6.171 21 C 0.072 3.928 22 Cl 0.052 6.948 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.271 0.729 35 H 0.207 0.793 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -0.017 -6.116 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.314 5.314 6 C 0.113 3.887 7 C -0.575 4.575 8 H 0.062 0.938 9 C -0.166 4.166 10 N -0.546 5.546 11 Si 0.769 3.231 12 H -0.206 1.206 13 H -0.206 1.206 14 H -0.196 1.196 15 C 0.365 3.635 16 O -0.463 6.463 17 C -0.221 4.221 18 C -0.210 4.210 19 C -0.099 4.099 20 O -0.069 6.069 21 C -0.007 4.007 22 Cl 0.081 6.919 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.223 0.777 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.647 -0.091 -6.543 7.059 hybrid contribution 0.200 -0.334 1.061 1.131 sum 2.847 -0.425 -5.482 6.192 Atomic orbital electron populations 1.21802 0.94653 1.01132 1.02078 1.21416 0.96507 0.97315 0.97228 1.21695 1.00946 0.93746 1.02782 1.21554 0.99781 0.79935 0.98661 1.47984 1.26043 1.07979 1.49421 1.19831 0.81708 0.95952 0.91187 1.21543 0.93309 1.40082 1.02601 0.93770 1.25397 0.94652 0.95983 1.00569 1.69988 1.00038 1.46104 1.38496 0.85729 0.77969 0.78808 0.80584 1.20574 1.20588 1.19554 1.17315 0.82884 0.84610 0.78643 1.90683 1.25987 1.80189 1.49392 1.21273 1.01983 0.94908 1.03903 1.24749 0.99618 0.94248 1.02374 1.24758 0.92443 0.99482 0.93262 1.83655 1.38818 1.32540 1.51846 1.22562 0.94060 0.85421 0.98695 1.98422 1.38327 1.95432 1.59698 0.92358 0.91468 0.94454 0.92998 0.92625 0.91227 0.91669 0.90159 0.91823 0.95089 0.93596 0.91937 0.77667 0.73074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.39 71.98 0.60 -3.63 16 2 C -0.11 -3.30 3.08 -10.80 -0.03 -3.34 16 3 C -0.13 -3.24 9.19 71.98 0.66 -2.58 16 4 C 0.12 4.56 4.76 86.38 0.41 4.97 16 5 N -0.59 -25.18 2.21 -830.28 -1.84 -27.02 16 6 C 0.23 10.72 3.57 85.63 0.31 11.02 16 7 C -0.54 -26.51 7.09 25.60 0.18 -26.33 16 8 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 9 C 0.04 1.73 4.75 84.65 0.40 2.13 16 10 N -0.91 -45.24 13.20 21.45 0.28 -44.96 16 11 Si 0.94 39.61 29.54 68.60 2.03 41.63 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 15 C 0.58 25.88 7.55 86.60 0.65 26.53 16 16 O -0.58 -26.97 15.37 -4.16 -0.06 -27.04 16 17 C -0.22 -9.10 6.09 -18.97 -0.12 -9.22 16 18 C -0.19 -7.72 8.21 23.65 0.19 -7.53 16 19 C -0.03 -1.12 12.03 66.88 0.80 -0.31 16 20 O -0.17 -5.76 10.53 3.42 0.04 -5.72 16 21 C 0.07 2.71 7.99 67.45 0.54 3.25 16 22 Cl 0.05 1.75 27.96 -2.72 -0.08 1.67 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.31 6.48 -2.38 -0.02 1.29 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 2.89 8.02 -2.39 -0.02 2.87 16 31 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 32 H 0.03 1.48 6.99 -2.39 -0.02 1.46 16 33 H 0.05 2.20 4.76 -2.39 -0.01 2.19 16 34 H 0.27 12.81 8.31 -92.70 -0.77 12.04 16 35 H 0.21 9.27 3.10 -2.91 -0.01 9.27 16 36 H 0.25 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -56.38 312.76 6.07 -50.31 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.10 Total: 16.17 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 4.61 Total: -5.04 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.55 Total: -71.98 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.03 Total: -32.76 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 17 Polarization: 1.75 SS G_CDS: -0.08 Total: 1.67 kcal Total: -56.38 6.07 -50.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232596955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.027 kcal (2) G-P(sol) polarization free energy of solvation -56.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds