Wall clock time and date at job start Fri Apr 10 2020 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 C 1.52997 * 109.47276 * 120.00029 * 2 1 3 5 5 H 1.09001 * 109.47375 * 185.00162 * 4 2 1 6 6 N 1.46496 * 109.47194 * 305.00214 * 4 2 1 7 7 C 1.34778 * 119.99951 * 274.99836 * 6 4 2 8 8 O 1.21285 * 119.99803 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00240 * 180.02562 * 7 6 4 10 10 S 1.81005 * 109.47336 * 180.02562 * 9 7 6 11 11 C 1.76195 * 99.99886 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00128 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99781 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00266 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00185 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46993 * 59.99941 * 15 13 11 17 17 H 1.48495 * 109.47279 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47134 * 300.00252 * 15 13 11 19 19 C 1.50706 * 109.47103 * 65.00226 * 4 2 1 20 20 N 1.34488 * 126.29031 * 104.71167 * 19 4 2 21 21 C 1.31133 * 105.61538 * 179.90307 * 20 19 4 22 22 O 1.33642 * 106.89631 * 0.35537 * 21 20 19 23 23 N 1.21298 * 109.80882 * 359.76870 * 22 21 20 24 24 H 1.08998 * 109.47375 * 299.99753 * 1 2 3 25 25 H 1.09004 * 109.47120 * 59.99893 * 1 2 3 26 26 H 1.09001 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47375 * 240.00247 * 2 1 3 28 28 H 1.09004 * 109.47134 * 300.00098 * 3 2 1 29 29 H 1.08998 * 109.46717 * 59.99844 * 3 2 1 30 30 H 1.09000 * 109.46966 * 179.97438 * 3 2 1 31 31 H 0.96995 * 120.00444 * 95.00053 * 6 4 2 32 32 H 1.09005 * 109.46834 * 299.99736 * 9 7 6 33 33 H 1.08991 * 109.47412 * 59.99655 * 9 7 6 34 34 H 0.97001 * 120.00055 * 179.97438 * 14 13 11 35 35 H 1.07994 * 126.55058 * 180.12042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 7 1.4558 -0.1037 2.4423 7 6 2.0348 0.9827 2.9909 8 8 3.0397 1.4488 2.4970 9 6 1.4343 1.6177 4.2186 10 16 2.4326 3.0457 4.7090 11 6 1.5291 3.5789 6.1246 12 1 0.6441 3.0427 6.4338 13 6 1.9554 4.6874 6.8429 14 7 3.0350 5.3400 6.4669 15 14 0.9980 5.2524 8.3441 16 1 0.9683 4.1618 9.3516 17 1 1.6555 6.4484 8.9293 18 1 -0.3907 5.5957 7.9452 19 6 1.6414 -2.1734 1.1888 20 7 2.4498 -3.2095 0.9034 21 6 1.6905 -4.2769 0.9646 22 8 0.4589 -3.8603 1.2735 23 7 0.4521 -2.6537 1.3975 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 0.6524 -0.4767 2.8376 32 1 0.4178 1.9439 3.9986 33 1 1.4150 0.8912 5.0309 34 1 3.3327 6.1149 6.9687 35 1 2.0004 -5.2973 0.7938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344226577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:55 Heat of formation + Delta-G solvation = 31.453586 kcal Electronic energy + Delta-G solvation = -20185.152540 eV Core-core repulsion = 16927.198553 eV Total energy + Delta-G solvation = -3257.953987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.96514 -39.88358 -37.07613 -35.51339 -33.12629 -32.46748 -32.42560 -29.53603 -27.16056 -27.04528 -25.46556 -24.50950 -22.83457 -20.97642 -19.69628 -18.58242 -18.36466 -17.70401 -16.62691 -16.34216 -15.74758 -15.46736 -14.80728 -14.32141 -14.21997 -13.95022 -13.60402 -13.18866 -12.90899 -12.58046 -12.26863 -12.26248 -12.07286 -11.73272 -11.42848 -11.32056 -11.05588 -11.04047 -10.97526 -10.82859 -10.75001 -10.39537 -9.83329 -9.45420 -9.07123 -8.98513 -8.26043 -6.50901 -6.22219 -3.92937 0.85412 1.86215 2.67484 2.88815 2.99846 3.23464 3.24092 3.28592 3.39433 3.61782 3.95067 4.19915 4.63007 4.69183 4.93213 5.04354 5.13023 5.13641 5.30636 5.47628 5.50830 5.62218 5.70667 5.75096 5.85990 5.89600 6.02730 6.06230 6.12174 6.25455 6.47109 6.58662 7.57860 7.59717 7.82964 8.34470 8.51653 9.23147 10.85094 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.003659 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.458878 B = 7650.042709 C = 8047.847577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.140 4.140 4 C 0.243 3.757 5 H 0.119 0.881 6 N -0.730 5.730 7 C 0.537 3.463 8 O -0.506 6.506 9 C -0.153 4.153 10 S -0.055 6.055 11 C -0.538 4.538 12 H 0.072 0.928 13 C 0.075 3.925 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.169 3.831 20 N -0.477 5.477 21 C 0.159 3.841 22 O 0.079 5.921 23 N -0.370 5.370 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 -18.707 -12.648 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.197 4.197 4 C 0.136 3.864 5 H 0.136 0.864 6 N -0.386 5.386 7 C 0.323 3.677 8 O -0.379 6.379 9 C -0.304 4.304 10 S 0.172 5.828 11 C -0.686 4.686 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.105 4.105 20 N -0.209 5.209 21 C -0.082 4.082 22 O 0.019 5.981 23 N -0.076 5.076 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.236 0.764 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -4.016 -17.016 -13.289 21.960 hybrid contribution -2.089 -0.866 1.676 2.815 sum -6.105 -17.882 -11.613 22.179 Atomic orbital electron populations 1.21872 0.94563 1.01850 1.02367 1.21522 0.96779 0.97869 0.95848 1.21875 1.01973 0.93694 1.02204 1.19131 1.00373 0.80011 0.86888 0.86373 1.45997 1.31350 1.31662 1.29559 1.20273 0.83910 0.79017 0.84455 1.90723 1.24035 1.61180 1.61964 1.23538 1.05068 1.04730 0.97056 1.85363 1.35436 1.26827 1.35211 1.22834 1.14737 1.16983 1.14022 0.90979 1.24979 0.95224 0.95396 0.97872 1.70004 1.22145 1.18833 1.39298 0.86232 0.79685 0.78166 0.81473 1.19944 1.20792 1.19918 1.25962 0.85253 0.99050 1.00192 1.71884 1.31935 0.97784 1.19329 1.30531 0.79988 1.02132 0.95565 1.85324 1.33417 1.16786 1.62578 1.74632 1.22072 0.90855 1.20059 0.91990 0.92453 0.92659 0.90570 0.93044 0.91368 0.91631 0.76379 0.89122 0.89226 0.92109 0.72054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.73 37.16 0.32 -1.36 16 2 C -0.10 -1.21 2.73 -90.62 -0.25 -1.45 16 3 C -0.14 -1.96 7.80 37.16 0.29 -1.67 16 4 C 0.24 3.20 2.50 -69.08 -0.17 3.03 16 5 H 0.12 1.74 7.58 -51.93 -0.39 1.35 16 6 N -0.73 -10.36 4.04 -54.93 -0.22 -10.58 16 7 C 0.54 9.78 6.42 -10.99 -0.07 9.71 16 8 O -0.51 -10.73 13.00 5.55 0.07 -10.65 16 9 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 10 S -0.05 -1.47 20.57 -107.50 -2.21 -3.68 16 11 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 15 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.17 1.99 6.59 -156.38 -1.03 0.96 16 20 N -0.48 -5.02 11.55 -13.72 -0.16 -5.18 16 21 C 0.16 0.99 13.40 51.98 0.70 1.68 16 22 O 0.08 0.66 11.31 18.11 0.20 0.86 16 23 N -0.37 -4.06 10.24 30.87 0.32 -3.75 16 24 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.62 6.24 -51.93 -0.32 0.29 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.13 5.65 -51.93 -0.29 0.84 16 30 H 0.06 0.98 7.85 -51.93 -0.41 0.57 16 31 H 0.40 5.08 8.36 -40.82 -0.34 4.74 16 32 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 33 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.26 0.02 8.06 -52.49 -0.42 -0.40 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -34.48 312.14 -5.60 -40.08 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.23 Total: 2.08 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 0.21 Total: -4.92 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.67 Total: -44.86 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.28 Total: -9.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.48 -5.60 -40.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344226577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.532 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds