Wall clock time and date at job start Fri Apr 10 2020 15:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00573 * 2 1 4 4 C 1.53002 * 109.47635 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46710 * 64.99981 * 4 3 2 6 6 C 1.37101 * 120.00178 * 269.99987 * 5 4 3 7 7 H 1.07997 * 120.00164 * 145.13756 * 6 5 4 8 8 C 1.38953 * 119.99680 * 325.14005 * 6 5 4 9 9 N 1.31410 * 120.00115 * 337.42678 * 8 6 5 10 10 Si 1.86803 * 119.99627 * 157.42965 * 8 6 5 11 11 H 1.48504 * 109.46927 * 59.99881 * 10 8 6 12 12 H 1.48499 * 109.46884 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47072 * 300.00066 * 10 8 6 14 14 C 1.34775 * 119.99815 * 90.00589 * 5 4 3 15 15 O 1.21288 * 120.00200 * 4.89602 * 14 5 4 16 16 C 1.50703 * 119.99959 * 184.90164 * 14 5 4 17 17 C 1.50697 * 109.47264 * 179.00964 * 16 14 5 18 18 N 1.29412 * 125.69819 * 89.97567 * 17 16 14 19 19 N 1.26399 * 116.47519 * 180.02562 * 18 17 16 20 20 C 1.29411 * 116.47723 * 0.02562 * 19 18 17 21 21 C 1.50700 * 125.69444 * 179.73413 * 20 19 18 22 22 S 1.71212 * 108.60658 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.47240 * 299.99823 * 1 2 3 24 24 H 1.09002 * 109.47188 * 59.99273 * 1 2 3 25 25 H 1.08998 * 109.47970 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46766 * 59.99673 * 3 2 1 27 27 H 1.09005 * 109.47104 * 300.00367 * 3 2 1 28 28 H 1.08993 * 109.46673 * 305.00210 * 4 3 2 29 29 H 1.08992 * 109.47206 * 185.00348 * 4 3 2 30 30 H 0.96993 * 119.99554 * 185.01850 * 9 8 6 31 31 H 1.09011 * 109.47152 * 59.00937 * 16 14 5 32 32 H 1.08994 * 109.47280 * 299.00839 * 16 14 5 33 33 H 1.08998 * 109.47186 * 90.02450 * 21 20 19 34 34 H 1.08997 * 109.46970 * 210.01948 * 21 20 19 35 35 H 1.09000 * 109.47392 * 330.02338 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0968 -0.7987 -1.3371 7 1 3.8631 -1.3055 -2.2617 8 6 4.5203 -1.5282 -0.2328 9 7 5.2130 -0.9403 0.7167 10 14 4.1049 -3.3444 -0.0981 11 1 4.6874 -4.0725 -1.2539 12 1 4.6677 -3.8886 1.1638 13 1 2.6298 -3.5161 -0.0973 14 6 4.2615 1.3337 -2.3218 15 8 4.2405 2.5423 -2.2222 16 6 4.6071 0.6922 -3.6410 17 6 4.8584 1.7639 -4.6701 18 7 6.0022 2.3131 -4.9246 19 7 6.0140 3.1985 -5.8267 20 6 4.8808 3.4578 -6.3954 21 6 4.6564 4.4736 -7.4858 22 16 3.6780 2.4591 -5.6973 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8409 29 1 3.9786 2.1763 0.0890 30 1 5.5707 -1.4636 1.4508 31 1 3.7790 0.0625 -3.9668 32 1 5.5032 0.0827 -3.5249 33 1 4.7931 3.9995 -8.4577 34 1 3.6424 4.8668 -7.4128 35 1 5.3712 5.2890 -7.3755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118713918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:51 Heat of formation + Delta-G solvation = -32.534595 kcal Electronic energy + Delta-G solvation = -20529.717951 eV Core-core repulsion = 17268.989228 eV Total energy + Delta-G solvation = -3260.728723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.29812 -40.55390 -38.56463 -36.63644 -34.69004 -33.51831 -32.41584 -30.75498 -28.33324 -27.25697 -26.53904 -25.63724 -23.65198 -21.32889 -20.63043 -20.28086 -18.78863 -18.09873 -17.12663 -17.04626 -16.69380 -16.34750 -16.17559 -15.95727 -15.60078 -15.35729 -14.54438 -14.34591 -14.27982 -13.79840 -13.57419 -13.47448 -13.29037 -13.10817 -12.84362 -12.73070 -12.49002 -12.42351 -12.09337 -11.79038 -11.47523 -11.16216 -11.05920 -10.77792 -10.58160 -10.50322 -10.29596 -9.45586 -8.24276 -5.94600 -0.52128 -0.01490 0.38558 1.46191 1.53716 1.55672 1.62347 1.94627 2.37052 2.81893 3.01574 3.14157 3.21672 3.63714 3.90929 4.17178 4.25535 4.26450 4.47556 4.52645 4.57019 4.60186 4.64593 4.65296 4.68089 4.78456 4.83125 4.90175 5.08202 5.37086 5.56881 5.98905 6.42742 6.44009 7.17371 7.55814 7.58469 7.97936 8.79303 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.005088 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.440635 B = 5501.678358 C = 6096.016269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.068 3.932 4 C 0.106 3.894 5 N -0.431 5.431 6 C -0.344 4.344 7 H 0.103 0.897 8 C 0.014 3.986 9 N -0.895 5.895 10 Si 0.979 3.021 11 H -0.262 1.262 12 H -0.290 1.290 13 H -0.268 1.268 14 C 0.461 3.539 15 O -0.634 6.634 16 C -0.038 4.038 17 C 0.000 4.000 18 N -0.298 5.298 19 N -0.304 5.304 20 C -0.027 4.027 21 C -0.071 4.071 22 S 0.224 5.776 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.271 0.729 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 2.576 -10.743 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.018 4.018 5 N -0.147 5.147 6 C -0.471 4.471 7 H 0.120 0.880 8 C -0.189 4.189 9 N -0.533 5.533 10 Si 0.804 3.196 11 H -0.187 1.187 12 H -0.215 1.215 13 H -0.193 1.193 14 C 0.249 3.751 15 O -0.523 6.523 16 C -0.082 4.082 17 C -0.280 4.280 18 N -0.135 5.135 19 N -0.141 5.141 20 C -0.306 4.306 21 C -0.131 4.131 22 S 0.468 5.532 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.337 2.986 -10.412 14.300 hybrid contribution 0.202 -0.535 0.778 0.965 sum -9.135 2.451 -9.634 13.501 Atomic orbital electron populations 1.22888 0.80738 1.03266 1.00309 1.88092 1.20317 1.27478 1.95284 1.22760 0.93982 0.84785 0.99454 1.21496 0.91916 0.97875 0.90542 1.43494 1.55413 1.06623 1.09193 1.19618 1.46194 0.80513 1.00762 0.87950 1.26010 0.93589 1.03827 0.95435 1.69927 1.31183 1.38625 1.13516 0.85206 0.78989 0.77811 0.77631 1.18698 1.21548 1.19261 1.20469 0.80701 0.86542 0.87399 1.90519 1.59738 1.15704 1.86329 1.19919 1.05891 0.93727 0.88618 1.28665 0.93001 1.03389 1.02919 1.71318 1.24183 1.06491 1.11495 1.71338 1.24760 1.11849 1.06202 1.29983 0.91733 1.04319 1.04537 1.20635 1.05235 0.94419 0.92808 1.83045 1.12472 1.30449 1.27219 0.93240 0.93861 0.88968 0.91736 0.94757 0.88230 0.92586 0.91963 0.85037 0.86671 0.86806 0.87290 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.39 -15.80 10.18 -148.98 -1.52 -17.32 16 3 C 0.07 2.72 6.28 71.98 0.45 3.17 16 4 C 0.11 5.09 5.47 86.38 0.47 5.57 16 5 N -0.43 -21.43 2.52 -635.56 -1.60 -23.03 16 6 C -0.34 -16.84 8.21 84.04 0.69 -16.15 16 7 H 0.10 4.61 6.99 -2.91 -0.02 4.59 16 8 C 0.01 0.72 4.95 84.93 0.42 1.14 16 9 N -0.89 -47.76 11.34 21.66 0.25 -47.51 16 10 Si 0.98 39.62 29.61 68.60 2.03 41.65 16 11 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 12 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 14 C 0.46 22.38 7.62 87.66 0.67 23.04 16 15 O -0.63 -34.02 15.59 -3.05 -0.05 -34.07 16 16 C -0.04 -1.53 4.91 29.10 0.14 -1.38 16 17 C 0.00 0.00 6.02 88.46 0.53 0.53 16 18 N -0.30 -12.85 11.66 -50.85 -0.59 -13.44 16 19 N -0.30 -11.57 11.66 -50.85 -0.59 -12.16 16 20 C -0.03 -0.76 7.53 88.47 0.67 -0.09 16 21 C -0.07 -1.12 10.48 71.24 0.75 -0.37 16 22 S 0.22 6.35 23.04 -56.49 -1.30 5.05 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.10 5.22 5.37 -2.39 -0.01 5.20 16 29 H 0.06 2.81 7.36 -2.39 -0.02 2.79 16 30 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 31 H 0.13 4.36 7.75 -2.38 -0.02 4.34 16 32 H 0.12 4.71 8.06 -2.39 -0.02 4.69 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -70.93 318.39 3.77 -67.16 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.11 Total: 16.28 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.04 Total: 17.39 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.54 Total: -96.14 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -1.56 Total: -51.39 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.30 Total: 5.05 kcal Total: -70.93 3.77 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118713918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.628 kcal (2) G-P(sol) polarization free energy of solvation -70.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds