Wall clock time and date at job start Fri Apr 10 2020 15:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29790 * 125.11797 * 2 1 4 4 C 1.36280 * 108.67329 * 179.76492 * 3 2 1 5 5 C 1.43196 * 126.62851 * 180.27386 * 4 3 2 6 6 N 4.66758 * 151.61754 * 0.47277 * 2 1 3 7 7 C 1.38473 * 106.74012 * 0.41756 * 4 3 2 8 8 N 1.37948 * 126.73454 * 179.84675 * 7 4 3 9 9 C 1.39789 * 119.99987 * 174.03301 * 8 7 4 10 10 C 1.38977 * 120.00375 * 330.28672 * 9 8 7 11 11 C 1.37986 * 119.99178 * 180.27592 * 10 9 8 12 12 C 1.38928 * 120.00749 * 359.97438 * 11 10 9 13 13 O 1.35775 * 119.99043 * 180.02562 * 12 11 10 14 14 C 1.34813 * 116.99594 * 185.59192 * 13 12 11 15 15 H 1.08007 * 119.99997 * 5.31876 * 14 13 12 16 16 C 1.38610 * 120.00339 * 185.31737 * 14 13 12 17 17 N 1.31592 * 119.99390 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00556 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46632 * 60.00077 * 18 16 14 20 20 H 1.48498 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46899 * 300.00519 * 18 16 14 22 22 C 1.38920 * 120.01046 * 0.04319 * 12 11 10 23 23 C 1.37980 * 120.00844 * 359.95910 * 22 12 11 24 24 O 1.34281 * 125.11777 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46801 * 269.96664 * 1 2 3 26 26 H 1.08997 * 109.46816 * 29.96726 * 1 2 3 27 27 H 1.08993 * 109.46707 * 149.96237 * 1 2 3 28 28 H 0.97002 * 120.00675 * 354.03001 * 8 7 4 29 29 H 1.08002 * 120.00820 * 0.26062 * 10 9 8 30 30 H 1.08000 * 119.99927 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99676 * 179.97438 * 17 16 14 32 32 H 1.08001 * 119.99097 * 179.97438 * 22 12 11 33 33 H 1.08007 * 120.00238 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2537 1.0616 0.0000 4 6 3.5607 0.6759 0.0053 5 6 4.7054 1.5362 0.0126 6 7 5.6136 2.2187 0.0183 7 6 3.5679 -0.7088 -0.0011 8 7 4.6777 -1.5282 -0.0018 9 6 4.5245 -2.9125 0.1172 10 6 3.4464 -3.4344 0.8221 11 6 3.2986 -4.8009 0.9443 12 6 4.2270 -5.6550 0.3623 13 8 4.0809 -6.9995 0.4823 14 6 5.0751 -7.7689 -0.0044 15 1 5.9755 -7.3103 -0.3860 16 6 4.9420 -9.1486 -0.0151 17 7 3.8448 -9.7072 0.4494 18 14 6.3199 -10.2148 -0.6888 19 1 7.5573 -9.9799 0.0980 20 1 5.9331 -11.6451 -0.5888 21 1 6.5644 -9.8669 -2.1116 22 6 5.3049 -5.1335 -0.3420 23 6 5.4533 -3.7672 -0.4644 24 8 2.2795 -1.0984 -0.0005 25 1 -0.3633 -0.0006 1.0276 26 1 -0.3633 0.8903 -0.5133 27 1 -0.3632 -0.8896 -0.5144 28 1 5.5644 -1.1438 -0.0850 29 1 2.7245 -2.7705 1.2744 30 1 2.4606 -5.2065 1.4916 31 1 3.7514 -10.6727 0.4416 32 1 6.0267 -5.7978 -0.7939 33 1 6.2917 -3.3619 -1.0117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:24 Heat of formation + Delta-G solvation = 60.518498 kcal Electronic energy + Delta-G solvation = -20593.337781 eV Core-core repulsion = 17201.200191 eV Total energy + Delta-G solvation = -3392.137589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.41521 -39.45643 -37.68596 -36.73274 -35.11998 -34.77912 -32.44023 -31.67825 -30.53350 -28.62455 -26.76667 -25.45083 -24.04976 -22.38679 -22.00403 -20.97011 -19.14421 -18.28117 -17.77288 -17.30960 -17.13319 -16.68903 -15.01302 -14.69747 -14.59382 -14.23973 -13.97298 -13.78818 -13.71375 -13.41790 -13.20819 -13.05805 -12.93186 -12.79315 -12.51336 -12.46678 -11.85294 -11.68970 -11.25457 -11.22050 -10.88611 -10.86261 -10.67799 -10.57078 -9.58336 -9.01569 -8.52679 -8.22823 -6.98943 -6.61083 -4.18901 1.04583 1.75849 1.92163 1.92703 2.15953 2.45430 3.04269 3.04656 3.08253 3.30267 3.42001 3.56831 3.83592 4.29174 4.36982 4.85966 4.94033 5.02431 5.05537 5.22679 5.28961 5.38341 5.47660 5.50582 5.83283 5.92457 6.00741 6.12828 6.46765 6.52326 6.71412 6.93275 7.01047 7.18664 7.23357 7.42073 7.46979 7.62808 7.82125 8.83595 9.49756 10.55933 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.003360 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.036619 B = 8330.805177 C = 9141.721334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.175 3.825 3 N -0.422 5.422 4 C -0.072 4.072 5 C 0.310 3.690 6 N -0.423 5.423 7 C 0.340 3.660 8 N -0.602 5.602 9 C 0.022 3.978 10 C -0.086 4.086 11 C -0.167 4.167 12 C 0.147 3.853 13 O -0.169 6.169 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.042 3.958 17 N -0.857 5.857 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.212 4.212 23 C -0.083 4.083 24 O -0.201 6.201 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.431 0.569 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.273 0.727 32 H 0.136 0.864 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 12.454 -1.338 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 N -0.150 5.150 4 C -0.198 4.198 5 C -0.004 4.004 6 N -0.102 5.102 7 C 0.174 3.826 8 N -0.232 5.232 9 C -0.071 4.071 10 C -0.106 4.106 11 C -0.187 4.187 12 C 0.092 3.908 13 O -0.071 6.071 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.490 5.490 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.194 1.194 22 C -0.232 4.232 23 C -0.103 4.103 24 O -0.087 6.087 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.272 0.728 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.956 13.537 -1.185 13.906 hybrid contribution 1.046 -1.329 -0.444 1.749 sum -1.910 12.207 -1.629 12.463 Atomic orbital electron populations 1.20245 0.80743 1.05176 1.04736 1.25679 0.95852 0.76959 1.05241 1.70505 0.99244 1.29334 1.15919 1.15843 0.88596 0.85938 1.29382 1.23598 0.91452 0.92832 0.92565 1.81284 1.10246 1.06757 1.11928 1.19450 0.80559 0.88193 0.94436 1.41046 1.03734 1.04134 1.74291 1.17299 1.01818 0.80106 1.07873 1.20459 0.97223 0.94706 0.98192 1.20041 1.01414 0.91176 1.06061 1.19419 0.93003 0.85507 0.92920 1.84000 1.43350 1.10946 1.68803 1.21301 0.95592 0.87752 1.42386 0.88933 1.25325 0.98220 0.96169 0.96682 1.70036 1.25641 1.11814 1.41527 0.85756 0.79571 0.78613 0.79409 1.19360 1.20143 1.19373 1.21017 1.01696 0.94332 1.06144 1.20418 0.98463 0.92752 0.98659 1.84498 1.13941 1.37215 1.73079 0.89000 0.88094 0.89125 0.72809 0.86231 0.85654 0.91694 0.84688 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.17 1.92 8.27 -13.14 -0.11 1.81 16 3 N -0.42 -5.48 11.35 -8.19 -0.09 -5.58 16 4 C -0.07 -0.96 6.99 -83.88 -0.59 -1.54 16 5 C 0.31 4.29 15.67 -22.47 -0.35 3.94 16 6 N -0.42 -6.34 18.54 41.84 0.78 -5.56 16 7 C 0.34 4.43 7.57 -14.71 -0.11 4.32 16 8 N -0.60 -7.63 5.47 -9.90 -0.05 -7.69 16 9 C 0.02 0.33 6.43 -83.68 -0.54 -0.21 16 10 C -0.09 -1.40 8.85 -39.40 -0.35 -1.75 16 11 C -0.17 -3.17 9.98 -39.42 -0.39 -3.56 16 12 C 0.15 3.20 6.65 -39.07 -0.26 2.94 16 13 O -0.17 -4.45 9.75 0.02 0.00 -4.45 16 14 C -0.39 -10.26 9.44 30.87 0.29 -9.97 16 15 H 0.09 2.19 5.28 -52.48 -0.28 1.91 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -23.78 13.67 55.48 0.76 -23.03 16 18 Si 0.94 19.27 29.55 -169.99 -5.02 14.25 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.21 -4.08 9.13 -39.42 -0.36 -4.44 16 23 C -0.08 -1.31 9.95 -39.40 -0.39 -1.71 16 24 O -0.20 -2.56 8.28 4.96 0.04 -2.52 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.43 4.53 8.68 -40.82 -0.35 4.17 16 29 H 0.12 1.75 6.21 -52.49 -0.33 1.42 16 30 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.14 2.59 5.70 -52.49 -0.30 2.29 16 33 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -30.26 307.60 -4.34 -34.60 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.50 Total: 4.46 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.88 Total: -9.12 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 1.39 Total: -41.85 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.04 Total: -6.98 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.26 -4.34 -34.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.118 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds