Wall clock time and date at job start Fri Apr 10 2020 15:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29790 * 125.11797 * 2 1 4 4 C 1.36280 * 108.67329 * 179.76492 * 3 2 1 5 5 C 1.43196 * 126.62851 * 180.27386 * 4 3 2 6 6 N 4.66758 * 151.61754 * 0.47277 * 2 1 3 7 7 C 1.38473 * 106.74012 * 0.41756 * 4 3 2 8 8 N 1.37948 * 126.73454 * 179.84675 * 7 4 3 9 9 C 1.39789 * 119.99987 * 174.03301 * 8 7 4 10 10 C 1.38977 * 120.00375 * 330.28672 * 9 8 7 11 11 C 1.37986 * 119.99178 * 180.27592 * 10 9 8 12 12 C 1.38928 * 120.00749 * 359.97438 * 11 10 9 13 13 O 1.35775 * 119.99043 * 180.02562 * 12 11 10 14 14 C 1.34813 * 116.99594 * 185.59192 * 13 12 11 15 15 H 1.08007 * 119.99997 * 5.31876 * 14 13 12 16 16 C 1.38610 * 120.00339 * 185.31737 * 14 13 12 17 17 N 1.31592 * 119.99390 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00556 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46632 * 60.00077 * 18 16 14 20 20 H 1.48498 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46899 * 300.00519 * 18 16 14 22 22 C 1.38920 * 120.01046 * 0.04319 * 12 11 10 23 23 C 1.37980 * 120.00844 * 359.95910 * 22 12 11 24 24 O 1.34281 * 125.11777 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46801 * 269.96664 * 1 2 3 26 26 H 1.08997 * 109.46816 * 29.96726 * 1 2 3 27 27 H 1.08993 * 109.46707 * 149.96237 * 1 2 3 28 28 H 0.97002 * 120.00675 * 354.03001 * 8 7 4 29 29 H 1.08002 * 120.00820 * 0.26062 * 10 9 8 30 30 H 1.08000 * 119.99927 * 180.02562 * 11 10 9 31 31 H 0.97000 * 119.99676 * 179.97438 * 17 16 14 32 32 H 1.08001 * 119.99097 * 179.97438 * 22 12 11 33 33 H 1.08007 * 120.00238 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2537 1.0616 0.0000 4 6 3.5607 0.6759 0.0053 5 6 4.7054 1.5362 0.0126 6 7 5.6136 2.2187 0.0183 7 6 3.5679 -0.7088 -0.0011 8 7 4.6777 -1.5282 -0.0018 9 6 4.5245 -2.9125 0.1172 10 6 3.4464 -3.4344 0.8221 11 6 3.2986 -4.8009 0.9443 12 6 4.2270 -5.6550 0.3623 13 8 4.0809 -6.9995 0.4823 14 6 5.0751 -7.7689 -0.0044 15 1 5.9755 -7.3103 -0.3860 16 6 4.9420 -9.1486 -0.0151 17 7 3.8448 -9.7072 0.4494 18 14 6.3199 -10.2148 -0.6888 19 1 7.5573 -9.9799 0.0980 20 1 5.9331 -11.6451 -0.5888 21 1 6.5644 -9.8669 -2.1116 22 6 5.3049 -5.1335 -0.3420 23 6 5.4533 -3.7672 -0.4644 24 8 2.2795 -1.0984 -0.0005 25 1 -0.3633 -0.0006 1.0276 26 1 -0.3633 0.8903 -0.5133 27 1 -0.3632 -0.8896 -0.5144 28 1 5.5644 -1.1438 -0.0850 29 1 2.7245 -2.7705 1.2744 30 1 2.4606 -5.2065 1.4916 31 1 3.7514 -10.6727 0.4416 32 1 6.0267 -5.7978 -0.7939 33 1 6.2917 -3.3619 -1.0117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:24 Heat of formation + Delta-G solvation = 38.578682 kcal Electronic energy + Delta-G solvation = -20594.289163 eV Core-core repulsion = 17201.200191 eV Total energy + Delta-G solvation = -3393.088971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.41665 -40.95773 -39.14963 -37.86721 -36.43373 -35.81563 -34.22777 -32.56747 -31.95272 -29.85476 -27.95810 -27.11240 -25.17904 -23.74233 -23.26320 -22.17057 -20.32367 -19.76155 -19.13136 -18.48754 -18.25852 -18.11769 -16.42853 -16.14324 -15.93564 -15.57167 -15.34956 -15.08348 -14.80586 -14.62463 -14.39272 -14.20916 -14.09549 -13.85136 -13.64567 -13.49782 -13.29080 -13.05254 -12.79293 -12.43651 -12.19114 -12.13714 -12.01976 -11.85692 -11.24105 -10.77011 -9.94561 -9.50536 -8.46352 -8.33442 -6.12785 -0.07402 0.44513 0.68231 0.88745 0.99753 1.36549 1.38491 1.47943 1.53704 2.18646 2.26285 2.34316 2.52814 2.76470 3.13351 3.47305 3.48685 3.81583 4.00017 4.02255 4.23587 4.41665 4.51743 4.72385 4.79987 4.81271 4.88638 4.99927 5.09706 5.26529 5.30372 5.35001 5.56793 5.69115 6.00374 6.04340 6.16995 6.35130 6.59420 6.98472 7.76717 8.76064 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.003360 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.036619 B = 8330.805177 C = 9141.721334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.195 3.805 3 N -0.450 5.450 4 C -0.069 4.069 5 C 0.321 3.679 6 N -0.444 5.444 7 C 0.333 3.667 8 N -0.597 5.597 9 C 0.057 3.943 10 C -0.084 4.084 11 C -0.171 4.171 12 C 0.108 3.892 13 O -0.225 6.225 14 C -0.413 4.413 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.918 5.918 18 Si 1.015 2.985 19 H -0.258 1.258 20 H -0.275 1.275 21 H -0.257 1.257 22 C -0.214 4.214 23 C -0.079 4.079 24 O -0.210 6.210 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.443 0.557 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.273 0.727 32 H 0.132 0.868 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 14.931 -2.073 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.017 4.017 3 N -0.178 5.178 4 C -0.193 4.193 5 C 0.007 3.993 6 N -0.123 5.123 7 C 0.167 3.833 8 N -0.230 5.230 9 C -0.037 4.037 10 C -0.104 4.104 11 C -0.191 4.191 12 C 0.057 3.943 13 O -0.131 6.131 14 C -0.489 4.489 15 H 0.123 0.877 16 C -0.218 4.218 17 N -0.556 5.556 18 Si 0.835 3.165 19 H -0.182 1.182 20 H -0.200 1.200 21 H -0.181 1.181 22 C -0.234 4.234 23 C -0.099 4.099 24 O -0.096 6.096 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.124 0.876 28 H 0.287 0.713 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.647 16.127 -1.926 16.455 hybrid contribution 0.796 -1.558 -0.201 1.761 sum -1.851 14.569 -2.127 14.839 Atomic orbital electron populations 1.20614 0.77403 1.06684 1.06501 1.26758 0.97214 0.75940 1.01754 1.70575 0.99140 1.30140 1.17944 1.15844 0.88732 0.85889 1.28864 1.23647 0.91232 0.92427 0.91980 1.81302 1.10957 1.07410 1.12654 1.19393 0.80738 0.88036 0.95096 1.40891 1.04509 1.02806 1.74757 1.17382 1.00178 0.81458 1.04695 1.20656 0.98070 0.93702 0.97956 1.20219 1.00989 0.92134 1.05728 1.19932 0.94942 0.84661 0.94742 1.83965 1.44512 1.12895 1.71770 1.21784 0.96352 0.88439 1.42287 0.87695 1.26535 1.00879 0.97410 0.97013 1.70182 1.28434 1.11949 1.45007 0.84683 0.76330 0.76337 0.79157 1.18196 1.19981 1.18078 1.21128 1.00750 0.95908 1.05602 1.20710 0.99634 0.91277 0.98285 1.84525 1.13911 1.38150 1.73027 0.86959 0.86494 0.87641 0.71326 0.84054 0.85736 0.91821 0.85080 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.28 16 2 C 0.20 3.62 8.27 88.41 0.73 4.35 16 3 N -0.45 -10.39 11.35 -294.69 -3.34 -13.74 16 4 C -0.07 -1.64 6.99 39.75 0.28 -1.37 16 5 C 0.32 8.18 15.67 88.33 1.38 9.57 16 6 N -0.44 -12.48 18.54 19.00 0.35 -12.13 16 7 C 0.33 7.61 7.57 83.79 0.63 8.24 16 8 N -0.60 -13.06 5.47 -295.61 -1.62 -14.68 16 9 C 0.06 1.56 6.43 38.23 0.25 1.81 16 10 C -0.08 -2.55 8.85 22.39 0.20 -2.35 16 11 C -0.17 -6.49 9.98 22.38 0.22 -6.27 16 12 C 0.11 4.87 6.65 22.60 0.15 5.02 16 13 O -0.23 -12.59 9.75 -22.84 -0.22 -12.81 16 14 C -0.41 -22.43 9.44 67.91 0.64 -21.78 16 15 H 0.11 5.12 5.28 -2.91 -0.02 5.10 16 16 C -0.02 -1.09 5.49 84.82 0.47 -0.63 16 17 N -0.92 -53.94 13.67 21.61 0.30 -53.65 16 18 Si 1.02 40.49 29.55 68.60 2.03 42.52 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 22 C -0.21 -8.14 9.13 22.37 0.20 -7.94 16 23 C -0.08 -2.29 9.95 22.39 0.22 -2.07 16 24 O -0.21 -4.62 8.28 -5.18 -0.04 -4.66 16 25 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.44 7.67 8.68 -92.71 -0.80 6.87 16 29 H 0.14 3.70 6.21 -2.91 -0.02 3.68 16 30 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.13 5.03 5.70 -2.91 -0.02 5.02 16 33 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -69.61 307.60 3.97 -65.64 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.39 Total: 16.64 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 6.13 Total: -13.14 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -4.31 Total: -94.19 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.27 Total: -17.47 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -69.61 3.97 -65.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.219 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds