Wall clock time and date at job start Fri Apr 10 2020 15:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29942 * 126.28836 * 2 1 4 4 O 1.21304 * 110.25320 * 179.68146 * 3 2 1 5 5 C 1.33648 * 109.80424 * 0.46944 * 4 3 2 6 6 C 1.50701 * 126.54694 * 179.79816 * 5 4 3 7 7 H 1.09002 * 109.47060 * 194.69176 * 6 5 4 8 8 C 1.52997 * 109.47212 * 74.69121 * 6 5 4 9 9 N 1.46500 * 109.47209 * 314.69154 * 6 5 4 10 10 C 1.46497 * 119.99968 * 60.00079 * 9 6 5 11 11 C 1.34774 * 119.99744 * 239.99906 * 9 6 5 12 12 O 1.21283 * 120.00281 * 0.02562 * 11 9 6 13 13 C 1.50699 * 119.99876 * 179.97438 * 11 9 6 14 14 S 1.80997 * 109.47293 * 180.02562 * 13 11 9 15 15 C 1.76204 * 100.00122 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00052 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99694 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00149 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46751 * 90.00052 * 19 17 15 21 21 H 1.48493 * 109.47180 * 209.99875 * 19 17 15 22 22 H 1.48501 * 109.47236 * 330.00683 * 19 17 15 23 23 N 1.31128 * 106.90084 * 359.54054 * 5 4 3 24 24 H 1.08994 * 109.46864 * 270.02379 * 1 2 3 25 25 H 1.08997 * 109.46533 * 30.02351 * 1 2 3 26 26 H 1.08996 * 109.46793 * 150.02104 * 1 2 3 27 27 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 28 28 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 29 29 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 30 30 H 1.08998 * 109.47466 * 90.00240 * 10 9 6 31 31 H 1.09002 * 109.47260 * 210.00281 * 10 9 6 32 32 H 1.09000 * 109.47562 * 329.99730 * 10 9 6 33 33 H 1.08999 * 109.47401 * 300.00089 * 13 11 9 34 34 H 1.09001 * 109.47492 * 59.99837 * 13 11 9 35 35 H 0.96995 * 119.99536 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4420 0.7123 0.0063 5 6 3.5299 -0.6212 0.0008 6 6 4.7970 -1.4371 0.0013 7 1 4.5651 -2.4684 -0.2645 8 6 5.4274 -1.3990 1.3949 9 7 5.7366 -0.8805 -0.9751 10 6 6.2049 0.5007 -0.8361 11 6 6.1702 -1.6390 -2.0013 12 8 5.7821 -2.7823 -2.1166 13 6 7.1363 -1.0663 -3.0060 14 16 7.5248 -2.3202 -4.2521 15 6 8.6394 -1.4079 -5.2671 16 1 8.8811 -0.3848 -5.0196 17 6 9.2059 -2.0038 -6.3855 18 7 8.9101 -3.2503 -6.6880 19 14 10.3869 -1.0364 -7.4619 20 1 11.7743 -1.2234 -6.9666 21 1 10.2915 -1.5220 -8.8619 22 1 10.0339 0.4052 -7.4127 23 7 2.3030 -1.0841 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 5.6593 -0.3677 1.6607 28 1 4.7284 -1.8131 2.1214 29 1 6.3436 -1.9894 1.3955 30 1 7.1095 0.5182 -0.2283 31 1 6.4217 0.9118 -1.8221 32 1 5.4320 1.0998 -0.3547 33 1 6.6856 -0.2004 -3.4908 34 1 8.0516 -0.7627 -2.4979 35 1 9.3063 -3.6667 -7.4692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326805665.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:39 Heat of formation + Delta-G solvation = 11.640305 kcal Electronic energy + Delta-G solvation = -20006.132908 eV Core-core repulsion = 16747.319752 eV Total energy + Delta-G solvation = -3258.813156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.75330 -41.12734 -37.64626 -37.21605 -34.57695 -34.49332 -32.43940 -30.17798 -30.14716 -27.94303 -27.65721 -25.86762 -24.40113 -22.64667 -20.67909 -19.64193 -19.31806 -18.54311 -18.25915 -17.46787 -16.91262 -16.86293 -16.01745 -15.88086 -15.09387 -14.70968 -14.56852 -14.52757 -14.44354 -13.98246 -13.71384 -13.55852 -13.41492 -13.27428 -13.16151 -13.05948 -12.88149 -12.63567 -12.60233 -12.42394 -12.14747 -11.72791 -11.13163 -11.11972 -10.95915 -10.26766 -10.05056 -8.66759 -8.33861 -6.12060 -0.08636 1.00598 1.24245 1.31951 1.43745 1.44483 1.55984 1.68473 1.90624 2.27703 2.60087 2.96100 3.00697 3.22705 3.58718 3.74726 3.84269 4.11980 4.12380 4.26463 4.39453 4.48107 4.54217 4.57328 4.63302 4.65049 4.77011 4.81447 4.96055 5.04756 5.13383 5.27948 5.43317 6.02920 6.21013 6.94887 7.00793 7.07796 8.75291 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.003479 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.390877 B = 8045.722698 C = 8153.717166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.163 3.837 3 N -0.404 5.404 4 O 0.080 5.920 5 C 0.182 3.818 6 C 0.232 3.768 7 H 0.124 0.876 8 C -0.150 4.150 9 N -0.608 5.608 10 C 0.062 3.938 11 C 0.539 3.461 12 O -0.553 6.553 13 C -0.124 4.124 14 S -0.151 6.151 15 C -0.545 4.545 16 H 0.085 0.915 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.258 1.258 23 N -0.498 5.498 24 H 0.110 0.890 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 10.841 17.829 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 N -0.115 5.115 4 O 0.024 5.976 5 C -0.040 4.040 6 C 0.126 3.874 7 H 0.142 0.858 8 C -0.208 4.208 9 N -0.343 5.343 10 C -0.079 4.079 11 C 0.328 3.672 12 O -0.430 6.430 13 C -0.274 4.274 14 S 0.076 5.924 15 C -0.693 4.693 16 H 0.103 0.897 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.182 1.182 23 N -0.233 5.233 24 H 0.128 0.872 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.162 9.548 17.546 22.883 hybrid contribution 1.096 1.348 -0.847 1.933 sum -10.066 10.896 16.699 22.336 Atomic orbital electron populations 1.20378 0.80143 1.05702 1.05864 1.26702 1.02278 0.82715 0.99249 1.74589 0.89811 1.24518 1.22569 1.85274 1.22214 1.24422 1.65656 1.29464 0.97284 0.82353 0.94933 1.19666 0.79597 0.95374 0.92793 0.85810 1.22176 1.02431 1.05293 0.90934 1.47919 1.45047 1.15463 1.25860 1.22294 1.01909 0.79131 1.04579 1.20246 0.80764 0.85284 0.80938 1.90707 1.58194 1.19599 1.74522 1.23384 1.01708 1.03525 0.98827 1.85608 1.59351 1.19706 1.27717 1.23198 1.30898 1.01573 1.13586 0.89719 1.26117 0.98487 0.96175 0.98333 1.70183 1.43525 1.13746 1.27322 0.84958 0.77861 0.78511 0.76690 1.19204 1.20528 1.18174 1.71933 1.00183 1.30401 1.20802 0.87196 0.88232 0.88327 0.89365 0.89294 0.89161 0.88729 0.89955 0.89406 0.87381 0.86345 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.51 71.24 0.75 -0.14 16 2 C 0.16 3.83 8.22 138.47 1.14 4.97 16 3 N -0.40 -10.11 12.16 -60.31 -0.73 -10.84 16 4 O 0.08 1.88 8.86 74.79 0.66 2.55 16 5 C 0.18 4.46 7.18 88.38 0.63 5.09 16 6 C 0.23 5.32 3.19 44.24 0.14 5.47 16 7 H 0.12 3.46 6.90 -2.39 -0.02 3.44 16 8 C -0.15 -2.17 9.18 71.98 0.66 -1.51 16 9 N -0.61 -15.34 2.75 -826.81 -2.28 -17.62 16 10 C 0.06 1.07 9.25 127.77 1.18 2.25 16 11 C 0.54 19.33 7.69 87.66 0.67 20.01 16 12 O -0.55 -24.78 15.19 -3.04 -0.05 -24.83 16 13 C -0.12 -4.72 4.71 71.24 0.34 -4.38 16 14 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 15 C -0.54 -30.50 9.50 67.95 0.65 -29.86 16 16 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.77 5.49 84.86 0.47 1.23 16 18 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 19 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 23 N -0.50 -13.38 11.55 -303.18 -3.50 -16.88 16 24 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 0.96 7.67 -2.39 -0.02 0.94 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.45 6.44 -2.39 -0.02 1.43 16 32 H 0.09 1.33 5.48 -2.39 -0.01 1.31 16 33 H 0.11 3.78 7.40 -2.40 -0.02 3.76 16 34 H 0.12 3.94 8.11 -2.39 -0.02 3.92 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -77.56 317.07 2.99 -74.56 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.11 Total: 9.50 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 6.63 Total: 3.13 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.22 Total: -100.54 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.62 Total: -22.28 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -77.56 2.99 -74.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326805665.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.202 kcal (2) G-P(sol) polarization free energy of solvation -77.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds