Wall clock time and date at job start Fri Apr 10 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47388 * 2 1 4 4 N 1.29412 * 125.69674 * 90.02044 * 3 2 1 5 5 N 1.26399 * 116.47343 * 179.73599 * 4 3 2 6 6 C 1.29412 * 116.47809 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.69574 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47104 * 89.19996 * 7 6 5 9 9 C 1.36942 * 120.00203 * 90.30739 * 8 7 6 10 10 H 1.08000 * 119.99250 * 322.58663 * 9 8 7 11 11 C 1.38807 * 119.99976 * 142.58597 * 9 8 7 12 12 N 1.31623 * 119.99665 * 157.40500 * 11 9 8 13 13 Si 1.86792 * 120.00304 * 337.40696 * 11 9 8 14 14 H 1.48498 * 109.47698 * 95.35905 * 13 11 9 15 15 H 1.48503 * 109.47096 * 215.36079 * 13 11 9 16 16 H 1.48499 * 109.47263 * 335.35744 * 13 11 9 17 17 C 1.46501 * 119.99810 * 270.29692 * 8 7 6 18 18 C 1.53004 * 109.46564 * 90.00556 * 17 8 7 19 19 C 1.50698 * 109.47202 * 179.97438 * 18 17 8 20 20 O 1.20831 * 119.99924 * 359.97438 * 19 18 17 21 21 O 1.34227 * 120.00565 * 179.97438 * 19 18 17 22 22 S 1.71215 * 108.60767 * 359.97438 * 6 5 4 23 23 H 1.08996 * 109.47307 * 300.00030 * 1 2 3 24 24 H 1.09000 * 109.47592 * 60.00098 * 1 2 3 25 25 H 1.09008 * 109.47374 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47062 * 239.99877 * 2 1 3 27 27 H 1.08996 * 109.47577 * 120.00419 * 2 1 3 28 28 H 1.09001 * 109.46884 * 209.19877 * 7 6 5 29 29 H 1.08999 * 109.47132 * 329.19717 * 7 6 5 30 30 H 0.97001 * 120.00017 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47123 * 210.00099 * 17 8 7 32 32 H 1.08994 * 109.47469 * 330.00662 * 17 8 7 33 33 H 1.09000 * 109.47027 * 299.99601 * 18 17 8 34 34 H 1.08994 * 109.47141 * 59.99905 * 18 17 8 35 35 H 0.96697 * 117.00501 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2844 2.1326 1.0510 5 7 2.7052 3.3071 0.8484 6 6 2.8367 3.6677 -0.3875 7 6 3.3198 5.0133 -0.8642 8 7 4.7785 4.9891 -0.9979 9 6 5.3511 4.6245 -2.1872 10 1 4.9086 3.8383 -2.7809 11 6 6.5002 5.2654 -2.6296 12 7 7.2958 4.6689 -3.4920 13 14 6.9174 6.9742 -2.0011 14 1 7.8554 6.8649 -0.8551 15 1 7.5540 7.7599 -3.0886 16 1 5.6744 7.6565 -1.5599 17 6 5.6246 5.3552 0.1406 18 6 5.9358 4.1058 0.9672 19 6 6.8067 4.4821 2.1381 20 8 7.1442 5.6316 2.2951 21 8 7.2074 3.5404 3.0066 22 16 2.3716 2.3605 -1.3905 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.8700 5.2391 -1.8310 29 1 3.0337 5.7785 -0.1427 30 1 8.0986 5.1169 -3.8015 31 1 6.5550 5.7910 -0.2234 32 1 5.1021 6.0816 0.7629 33 1 5.0054 3.6699 1.3312 34 1 6.4584 3.3793 0.3449 35 1 7.7652 3.8298 3.7415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605867894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:39 Heat of formation + Delta-G solvation = -13.131909 kcal Electronic energy + Delta-G solvation = -20552.501155 eV Core-core repulsion = 17292.613795 eV Total energy + Delta-G solvation = -3259.887359 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84990 -39.81876 -36.69561 -35.69917 -34.42205 -32.11027 -31.49630 -29.81914 -27.40774 -25.13092 -24.78710 -23.13361 -21.67522 -20.49730 -19.26117 -18.85122 -17.77572 -16.77404 -16.12327 -15.97122 -15.42452 -15.12924 -15.03588 -14.49296 -14.07743 -13.54941 -13.34466 -12.99708 -12.73729 -12.66923 -12.55191 -12.02109 -11.95315 -11.73811 -11.33739 -11.24201 -11.15042 -10.89551 -10.62514 -10.17093 -10.05494 -9.96392 -9.74548 -9.66211 -9.31057 -9.24085 -8.65702 -7.24623 -6.20026 -3.68646 0.86048 1.35757 1.86818 2.63148 2.95385 3.30191 3.42668 3.46049 3.47257 4.26643 4.38692 4.78546 4.89315 4.97241 5.08872 5.14389 5.31733 5.49790 5.59199 5.66432 5.68758 5.75923 5.89696 5.97693 6.03698 6.09887 6.20834 6.26539 6.47204 6.65461 6.85991 7.77027 8.12174 8.27177 8.68310 8.97958 9.46084 9.79537 10.93124 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.006422 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.974124 B = 4358.843576 C = 5524.974106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.044 4.044 4 N -0.266 5.266 5 N -0.277 5.277 6 C -0.002 4.002 7 C 0.213 3.787 8 N -0.582 5.582 9 C -0.295 4.295 10 H 0.084 0.916 11 C 0.051 3.949 12 N -0.885 5.885 13 Si 0.873 3.127 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.265 1.265 17 C 0.149 3.851 18 C -0.137 4.137 19 C 0.483 3.517 20 O -0.524 6.524 21 O -0.522 6.522 22 S 0.173 5.827 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.268 0.732 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 -6.618 5.626 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.324 4.324 4 N -0.103 5.103 5 N -0.115 5.115 6 C -0.284 4.284 7 C 0.081 3.919 8 N -0.301 5.301 9 C -0.423 4.423 10 H 0.102 0.898 11 C -0.153 4.153 12 N -0.524 5.524 13 Si 0.702 3.298 14 H -0.206 1.206 15 H -0.226 1.226 16 H -0.189 1.189 17 C 0.023 3.977 18 C -0.177 4.177 19 C 0.326 3.674 20 O -0.413 6.413 21 O -0.333 6.333 22 S 0.417 5.583 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.784 -6.318 5.527 12.892 hybrid contribution 0.960 0.913 0.937 1.622 sum -8.824 -5.406 6.464 12.201 Atomic orbital electron populations 1.21765 0.93707 1.02337 1.02629 1.20032 0.96459 0.87255 1.04219 1.29069 1.06154 1.04143 0.92986 1.71352 1.12477 0.99260 1.27228 1.71383 1.15192 1.07334 1.17573 1.31181 0.99977 1.05191 0.92017 1.19599 0.85721 0.86122 1.00444 1.44145 0.98681 1.78448 1.08866 1.18717 1.10178 1.16285 0.97079 0.89804 1.25372 0.96553 0.97518 0.95809 1.69866 1.12204 1.36848 1.33470 0.86991 0.79014 0.86401 0.77351 1.20573 1.22575 1.18893 1.21153 0.96072 0.92520 0.87975 1.22247 0.99090 1.04375 0.91978 1.24030 0.77824 0.82904 0.82686 1.90672 1.54984 1.21437 1.74217 1.84623 1.65667 1.43798 1.39182 1.83817 1.56314 1.06107 1.12060 0.92063 0.92377 0.91503 0.89637 0.88981 0.89276 0.90282 0.92252 0.91429 0.92607 0.87590 0.87555 0.74267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.15 0.37 -0.91 16 2 C -0.04 -0.40 6.54 -27.89 -0.18 -0.59 16 3 C -0.04 -0.65 6.78 -13.30 -0.09 -0.74 16 4 N -0.27 -4.70 11.66 32.58 0.38 -4.32 16 5 N -0.28 -5.18 10.21 32.58 0.33 -4.84 16 6 C 0.00 -0.03 6.85 -13.30 -0.09 -0.12 16 7 C 0.21 3.87 6.31 -5.20 -0.03 3.84 16 8 N -0.58 -12.73 2.06 -174.61 -0.36 -13.09 16 9 C -0.29 -7.45 9.91 -15.06 -0.15 -7.60 16 10 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 11 C 0.05 1.37 5.30 -17.43 -0.09 1.27 16 12 N -0.89 -25.33 13.97 55.49 0.78 -24.55 16 13 Si 0.87 21.46 25.06 -169.99 -4.26 17.20 16 14 H -0.28 -7.01 6.66 56.52 0.38 -6.64 16 15 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 16 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.15 3.23 3.84 -4.04 -0.02 3.22 16 18 C -0.14 -2.74 6.14 -27.88 -0.17 -2.91 16 19 C 0.48 9.16 8.33 36.00 0.30 9.46 16 20 O -0.52 -11.18 16.74 -18.75 -0.31 -11.49 16 21 O -0.52 -8.06 13.42 -39.25 -0.53 -8.59 16 22 S 0.17 2.63 23.04 -107.50 -2.48 0.16 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.50 8.04 -51.93 -0.42 1.08 16 29 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.07 1.64 3.22 -51.93 -0.17 1.47 16 32 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 33 H 0.11 2.11 6.33 -51.93 -0.33 1.78 16 34 H 0.11 2.25 8.14 -51.93 -0.42 1.82 16 35 H 0.40 4.15 9.10 45.56 0.41 4.56 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -31.81 314.58 -5.30 -37.11 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.44 Total: 2.77 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.16 Total: 4.91 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 1.13 Total: -46.80 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.84 Total: -20.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.26 Total: 17.20 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.48 Total: 0.16 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.81 -5.30 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605867894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.978 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds