Wall clock time and date at job start Fri Apr 10 2020 15:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99765 * 2 1 4 4 C 1.53005 * 109.47298 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46847 * 65.00019 * 4 3 2 6 6 C 1.46496 * 119.99934 * 270.00334 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99675 * 6 5 4 8 8 H 1.08005 * 119.99711 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00286 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99761 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46839 * 60.00169 * 11 9 7 13 13 H 1.48496 * 109.47015 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47206 * 300.00298 * 11 9 7 15 15 C 1.34777 * 120.00065 * 89.99940 * 5 4 3 16 16 O 1.21583 * 119.99929 * 0.02562 * 15 5 4 17 17 N 1.34777 * 120.00128 * 180.02562 * 15 5 4 18 18 C 1.39003 * 119.99882 * 180.27911 * 17 15 5 19 19 N 1.29622 * 124.94489 * 359.41397 * 18 17 15 20 20 C 1.32026 * 116.90980 * 179.81493 * 19 18 17 21 21 C 1.33414 * 114.56400 * 0.47553 * 20 19 18 22 22 S 1.70966 * 124.94390 * 179.72052 * 18 17 15 23 23 H 1.08993 * 109.48089 * 299.99858 * 1 2 3 24 24 H 1.09006 * 109.46888 * 60.00793 * 1 2 3 25 25 H 1.09010 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47250 * 59.99696 * 3 2 1 27 27 H 1.08994 * 109.47740 * 299.99915 * 3 2 1 28 28 H 1.08996 * 109.47096 * 305.00240 * 4 3 2 29 29 H 1.08998 * 109.47119 * 185.00209 * 4 3 2 30 30 H 1.08999 * 109.47701 * 29.99507 * 6 5 4 31 31 H 1.09005 * 109.47188 * 150.00374 * 6 5 4 32 32 H 0.97009 * 119.99873 * 180.02562 * 10 9 7 33 33 H 0.97001 * 119.99727 * 359.97438 * 17 15 5 34 34 H 1.07993 * 122.72179 * 180.19479 * 20 19 18 35 35 H 1.08004 * 125.96456 * 179.75077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3403 7 6 5.5017 -1.2979 -0.9413 8 1 6.2201 -0.5459 -0.6498 9 6 5.8611 -2.6290 -0.9473 10 7 4.9862 -3.5447 -1.3018 11 14 7.5907 -3.1318 -0.4520 12 1 7.8524 -2.6959 0.9432 13 1 7.7217 -4.6082 -0.5416 14 1 8.5726 -2.4909 -1.3633 15 6 4.2632 1.3331 -2.3200 16 8 4.1560 2.5419 -2.2457 17 7 4.6686 0.7620 -3.4716 18 6 4.9698 1.5555 -4.5724 19 7 4.8842 2.8486 -4.6013 20 6 5.2138 3.4441 -5.7326 21 6 5.5863 2.6140 -6.7083 22 16 5.4999 0.9675 -6.0877 23 1 -0.3635 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0278 -0.0005 26 1 1.6884 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5686 0.8426 29 1 3.9783 2.1767 0.0902 30 1 3.3858 -1.3631 -0.6713 31 1 3.9139 -1.2121 -2.3645 32 1 5.2389 -4.4813 -1.3056 33 1 4.7545 -0.2023 -3.5307 34 1 5.1800 4.5161 -5.8594 35 1 5.8883 2.9013 -7.7047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610540808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:34 Heat of formation + Delta-G solvation = -7.795307 kcal Electronic energy + Delta-G solvation = -20603.213131 eV Core-core repulsion = 17343.557184 eV Total energy + Delta-G solvation = -3259.655947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15143 -38.78151 -37.43626 -34.98296 -34.40334 -32.64279 -30.02547 -28.85018 -27.09896 -25.99917 -24.74499 -22.97688 -22.63898 -20.93649 -18.96361 -18.33838 -17.00871 -16.59531 -16.18647 -15.89062 -15.64720 -15.15455 -14.85552 -14.57516 -14.48524 -14.09370 -13.60841 -13.36755 -12.87035 -12.44953 -12.07188 -11.84655 -11.51004 -11.47974 -11.28012 -11.00905 -10.88774 -10.59885 -10.44435 -10.21097 -9.79955 -9.73797 -9.34553 -9.05471 -8.92055 -8.57304 -8.01656 -7.61858 -6.19752 -4.28630 1.07866 1.26380 1.94709 3.15616 3.18125 3.23644 3.28667 3.32354 3.93082 4.17484 4.24989 4.40096 5.03500 5.13039 5.40676 5.40772 5.50028 5.65076 5.67724 5.71795 5.73888 5.86295 6.02180 6.21033 6.37135 6.71304 6.75227 7.12280 7.19653 7.48402 7.62880 7.76887 8.02712 8.13456 8.49917 8.81167 9.19041 9.40331 10.86072 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.006988 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.079366 B = 4006.130329 C = 5879.392230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.600 5.600 6 C 0.240 3.760 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.702 3.298 16 O -0.562 6.562 17 N -0.635 5.635 18 C 0.315 3.685 19 N -0.489 5.489 20 C 0.074 3.926 21 C -0.299 4.299 22 S 0.103 5.897 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.430 0.570 34 H 0.173 0.827 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 7.076 -5.589 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.032 4.032 4 C 0.017 3.983 5 N -0.334 5.334 6 C 0.120 3.880 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.402 3.598 16 O -0.437 6.437 17 N -0.289 5.289 18 C -0.056 4.056 19 N -0.211 5.211 20 C -0.078 4.078 21 C -0.440 4.440 22 S 0.351 5.649 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.272 0.728 34 H 0.190 0.810 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.723 6.773 -5.329 9.388 hybrid contribution 0.751 0.147 0.125 0.776 sum -2.972 6.920 -5.204 9.154 Atomic orbital electron populations 1.22676 0.82203 1.02346 0.99168 1.88045 1.18639 1.27516 1.95215 1.23076 0.95378 0.84887 0.99879 1.21253 0.90863 0.99528 0.86680 1.47363 1.67410 1.09174 1.09502 1.19423 0.97702 0.73015 0.97844 1.21543 0.97276 0.92510 1.47117 0.92086 1.24940 0.97603 0.96301 0.94822 1.69926 1.34405 1.01294 1.46980 0.86577 0.84293 0.77370 0.79371 1.20083 1.21111 1.20133 1.15873 0.78614 0.85226 0.80130 1.90939 1.58586 1.11736 1.82467 1.42559 1.67399 1.10406 1.08536 1.23579 0.98908 0.90844 0.92283 1.66670 1.22930 1.05570 1.25933 1.21646 0.98071 1.01342 0.86708 1.26635 1.17939 0.93643 1.05784 1.84018 1.65706 1.09719 1.05452 0.94700 0.94704 0.89901 0.93091 0.93295 0.89199 0.89240 0.92500 0.95877 0.92406 0.72833 0.81003 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.70 9.53 -35.23 -0.34 -7.04 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.14 2.62 5.81 -4.04 -0.02 2.59 16 5 N -0.60 -12.87 2.42 -180.80 -0.44 -13.31 16 6 C 0.24 5.68 4.75 -5.19 -0.02 5.65 16 7 C -0.55 -14.03 9.39 -34.44 -0.32 -14.35 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 11 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.70 15.55 8.24 -86.92 -0.72 14.83 16 16 O -0.56 -13.47 14.55 5.29 0.08 -13.40 16 17 N -0.63 -12.85 5.27 -17.48 -0.09 -12.94 16 18 C 0.31 5.89 8.02 -87.35 -0.70 5.19 16 19 N -0.49 -9.47 8.65 -15.12 -0.13 -9.60 16 20 C 0.07 1.10 11.34 -19.15 -0.22 0.88 16 21 C -0.30 -3.78 11.35 29.05 0.33 -3.45 16 22 S 0.10 1.47 23.22 -107.50 -2.50 -1.02 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.66 8.07 -51.93 -0.42 1.24 16 29 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 30 H 0.06 1.45 7.11 -51.93 -0.37 1.08 16 31 H 0.02 0.56 6.36 -51.93 -0.33 0.23 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.43 8.47 6.55 -40.82 -0.27 8.20 16 34 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 317.89 15.07 4.79 4.79 Total: -1.00 -31.30 317.89 -7.61 -38.91 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.28 Total: 5.99 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -0.43 Total: 15.54 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.08 Total: -59.18 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.26 Total: -20.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.50 Total: -1.02 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.30 -7.61 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.114 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds