Wall clock time and date at job start Fri Apr 10 2020 15:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99765 * 2 1 4 4 C 1.53005 * 109.47298 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46847 * 65.00019 * 4 3 2 6 6 C 1.46496 * 119.99934 * 270.00334 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99675 * 6 5 4 8 8 H 1.08005 * 119.99711 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00286 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99761 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46839 * 60.00169 * 11 9 7 13 13 H 1.48496 * 109.47015 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47206 * 300.00298 * 11 9 7 15 15 C 1.34777 * 120.00065 * 89.99940 * 5 4 3 16 16 O 1.21583 * 119.99929 * 0.02562 * 15 5 4 17 17 N 1.34777 * 120.00128 * 180.02562 * 15 5 4 18 18 C 1.39003 * 119.99882 * 180.27911 * 17 15 5 19 19 N 1.29622 * 124.94489 * 359.41397 * 18 17 15 20 20 C 1.32026 * 116.90980 * 179.81493 * 19 18 17 21 21 C 1.33414 * 114.56400 * 0.47553 * 20 19 18 22 22 S 1.70966 * 124.94390 * 179.72052 * 18 17 15 23 23 H 1.08993 * 109.48089 * 299.99858 * 1 2 3 24 24 H 1.09006 * 109.46888 * 60.00793 * 1 2 3 25 25 H 1.09010 * 109.47046 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47250 * 59.99696 * 3 2 1 27 27 H 1.08994 * 109.47740 * 299.99915 * 3 2 1 28 28 H 1.08996 * 109.47096 * 305.00240 * 4 3 2 29 29 H 1.08998 * 109.47119 * 185.00209 * 4 3 2 30 30 H 1.08999 * 109.47701 * 29.99507 * 6 5 4 31 31 H 1.09005 * 109.47188 * 150.00374 * 6 5 4 32 32 H 0.97009 * 119.99873 * 180.02562 * 10 9 7 33 33 H 0.97001 * 119.99727 * 359.97438 * 17 15 5 34 34 H 1.07993 * 122.72179 * 180.19479 * 20 19 18 35 35 H 1.08004 * 125.96456 * 179.75077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3403 7 6 5.5017 -1.2979 -0.9413 8 1 6.2201 -0.5459 -0.6498 9 6 5.8611 -2.6290 -0.9473 10 7 4.9862 -3.5447 -1.3018 11 14 7.5907 -3.1318 -0.4520 12 1 7.8524 -2.6959 0.9432 13 1 7.7217 -4.6082 -0.5416 14 1 8.5726 -2.4909 -1.3633 15 6 4.2632 1.3331 -2.3200 16 8 4.1560 2.5419 -2.2457 17 7 4.6686 0.7620 -3.4716 18 6 4.9698 1.5555 -4.5724 19 7 4.8842 2.8486 -4.6013 20 6 5.2138 3.4441 -5.7326 21 6 5.5863 2.6140 -6.7083 22 16 5.4999 0.9675 -6.0877 23 1 -0.3635 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0278 -0.0005 26 1 1.6884 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5686 0.8426 29 1 3.9783 2.1767 0.0902 30 1 3.3858 -1.3631 -0.6713 31 1 3.9139 -1.2121 -2.3645 32 1 5.2389 -4.4813 -1.3056 33 1 4.7545 -0.2023 -3.5307 34 1 5.1800 4.5161 -5.8594 35 1 5.8883 2.9013 -7.7047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610540808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:34 Heat of formation + Delta-G solvation = -28.244114 kcal Electronic energy + Delta-G solvation = -20604.099858 eV Core-core repulsion = 17343.557184 eV Total energy + Delta-G solvation = -3260.542674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67218 -40.15527 -38.75873 -36.67488 -35.93691 -34.58395 -31.45521 -30.18070 -28.88727 -27.21152 -26.09215 -24.85803 -24.01074 -22.33790 -20.33902 -19.82134 -18.68575 -18.33398 -17.66204 -17.21269 -17.02072 -16.69428 -16.39131 -16.09603 -15.77365 -15.44978 -15.06615 -14.87666 -14.29135 -14.08290 -13.66525 -13.43195 -13.10823 -12.78116 -12.76271 -12.62436 -12.38469 -12.16611 -11.93705 -11.86521 -11.71722 -11.39507 -10.63111 -10.57416 -10.29671 -10.25739 -9.58418 -9.07782 -8.19287 -6.35548 -0.14489 0.03277 0.81088 1.43015 1.43945 1.51596 1.72113 1.86474 2.33594 2.41804 2.81168 2.94747 3.10280 3.73713 4.15309 4.21194 4.38370 4.51093 4.52936 4.54824 4.59344 4.63845 4.83776 4.86732 4.93093 5.02956 5.27181 5.30678 5.56402 5.71820 5.93440 6.04679 6.30272 6.60119 6.79713 7.05074 7.36229 7.55255 8.85220 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.006988 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.079366 B = 4006.130329 C = 5879.392230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.055 3.945 4 C 0.134 3.866 5 N -0.603 5.603 6 C 0.260 3.740 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.027 3.973 10 N -0.914 5.914 11 Si 0.955 3.045 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.273 1.273 15 C 0.699 3.301 16 O -0.587 6.587 17 N -0.641 5.641 18 C 0.264 3.736 19 N -0.525 5.525 20 C 0.044 3.956 21 C -0.263 4.263 22 S 0.149 5.851 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.036 0.964 31 H 0.016 0.984 32 H 0.269 0.731 33 H 0.428 0.572 34 H 0.199 0.801 35 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 7.491 -6.779 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.022 4.022 4 C 0.011 3.989 5 N -0.337 5.337 6 C 0.139 3.861 7 C -0.592 4.592 8 H 0.069 0.931 9 C -0.175 4.175 10 N -0.553 5.553 11 Si 0.780 3.220 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.198 1.198 15 C 0.398 3.602 16 O -0.464 6.464 17 N -0.295 5.295 18 C -0.105 4.105 19 N -0.248 5.248 20 C -0.106 4.106 21 C -0.404 4.404 22 S 0.397 5.603 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.269 0.731 34 H 0.216 0.784 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.081 7.207 -6.542 10.210 hybrid contribution 0.544 0.070 0.350 0.650 sum -2.537 7.277 -6.193 9.886 Atomic orbital electron populations 1.22870 0.80054 1.03366 1.00538 1.87993 1.21108 1.28214 1.95473 1.22953 0.93701 0.84752 1.00810 1.21432 0.92674 0.99324 0.85462 1.47373 1.67625 1.08288 1.10443 1.19006 0.96186 0.74231 0.96659 1.21680 0.97881 0.92550 1.47109 0.93128 1.25608 1.00911 0.96235 0.94706 1.70013 1.36002 1.01592 1.47697 0.85657 0.80174 0.77201 0.78930 1.19928 1.20438 1.19808 1.16014 0.78521 0.85021 0.80628 1.90897 1.59907 1.12550 1.83066 1.42405 1.67887 1.10363 1.08820 1.23798 1.01817 0.91338 0.93504 1.66598 1.23023 1.06547 1.28653 1.22056 0.99490 1.02872 0.86138 1.27235 1.14052 0.92232 1.06837 1.83846 1.63802 1.10356 1.02286 0.92278 0.94290 0.89157 0.89695 0.94571 0.89477 0.88887 0.94571 0.96629 0.92191 0.73069 0.78403 0.76438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -14.63 9.53 -148.98 -1.42 -16.05 16 3 C 0.06 1.83 6.28 71.98 0.45 2.28 16 4 C 0.13 5.10 5.81 86.38 0.50 5.60 16 5 N -0.60 -26.70 2.42 -844.20 -2.04 -28.75 16 6 C 0.26 12.70 4.75 85.63 0.41 13.11 16 7 C -0.55 -28.96 9.39 25.60 0.24 -28.72 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.03 1.39 5.46 84.65 0.46 1.85 16 10 N -0.91 -49.87 13.29 21.45 0.28 -49.59 16 11 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 15 C 0.70 31.96 8.24 179.05 1.48 33.44 16 16 O -0.59 -28.95 14.55 -3.98 -0.06 -29.00 16 17 N -0.64 -26.70 5.27 -327.47 -1.73 -28.42 16 18 C 0.26 9.91 8.02 179.20 1.44 11.34 16 19 N -0.53 -20.26 8.65 -201.76 -1.74 -22.01 16 20 C 0.04 1.23 11.34 83.57 0.95 2.18 16 21 C -0.26 -5.74 11.35 66.73 0.76 -4.98 16 22 S 0.15 3.99 23.22 -56.49 -1.31 2.68 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 3.29 8.07 -2.39 -0.02 3.27 16 29 H 0.09 3.41 7.42 -2.39 -0.02 3.39 16 30 H 0.04 1.92 7.11 -2.39 -0.02 1.90 16 31 H 0.02 0.79 6.36 -2.38 -0.02 0.78 16 32 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 33 H 0.43 17.51 6.55 -92.71 -0.61 16.90 16 34 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.22 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -68.36 317.89 2.44 -65.91 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.51 Total: 23.40 kcal Atomic # 6 Polarization: 30.15 SS G_CDS: 7.93 Total: 38.08 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.23 Total: -128.76 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.48 Total: -45.05 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.31 Total: 2.68 kcal Total: -68.36 2.44 -65.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.668 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds