Wall clock time and date at job start Fri Apr 10 2020 15:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42910 * 113.99623 * 2 1 4 4 C 1.52996 * 109.46927 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47491 * 63.52470 * 4 3 2 6 6 C 1.36936 * 120.00330 * 83.24104 * 5 4 3 7 7 H 1.07998 * 120.00384 * 170.33951 * 6 5 4 8 8 C 1.38818 * 119.99775 * 350.34468 * 6 5 4 9 9 N 1.31621 * 119.99954 * 2.79565 * 8 6 5 10 10 Si 1.86795 * 119.99910 * 182.79841 * 8 6 5 11 11 H 1.48503 * 109.47065 * 90.00119 * 10 8 6 12 12 H 1.48497 * 109.47223 * 209.99786 * 10 8 6 13 13 H 1.48502 * 109.47398 * 329.99957 * 10 8 6 14 14 C 1.46501 * 120.00062 * 263.24615 * 5 4 3 15 15 C 1.50706 * 109.47057 * 263.62459 * 14 5 4 16 16 C 1.38156 * 120.02457 * 258.25318 * 15 14 5 17 17 C 1.38338 * 120.04654 * 179.72148 * 16 15 14 18 18 Cl 1.73607 * 119.96355 * 180.27766 * 17 16 15 19 19 C 1.38392 * 120.08142 * 0.55380 * 17 16 15 20 20 C 1.38122 * 120.04352 * 359.72128 * 19 17 16 21 21 C 1.38701 * 120.01625 * 78.52663 * 15 14 5 22 22 O 1.35919 * 120.04716 * 0.02565 * 21 15 14 23 23 H 1.09007 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47869 * 299.99807 * 1 2 3 25 25 H 1.09004 * 109.47520 * 60.00163 * 1 2 3 26 26 H 1.09000 * 109.47038 * 59.99583 * 3 2 1 27 27 H 1.08994 * 109.46650 * 299.99954 * 3 2 1 28 28 H 1.09002 * 109.47372 * 303.52307 * 4 3 2 29 29 H 1.09003 * 109.47035 * 183.52447 * 4 3 2 30 30 H 0.96998 * 120.00102 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47356 * 23.62322 * 14 5 4 32 32 H 1.08999 * 109.47265 * 143.62841 * 14 5 4 33 33 H 1.08010 * 119.97660 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.97861 * 179.70686 * 19 17 16 35 35 H 1.07996 * 120.02118 * 179.97438 * 20 19 17 36 36 H 0.96704 * 114.00356 * 89.99837 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9731 0.5327 -1.2372 6 6 4.1279 1.2685 -2.3817 7 1 4.5965 0.8267 -3.2486 8 6 3.6825 2.5825 -2.4275 9 7 3.1615 3.1386 -1.3543 10 14 3.8224 3.5613 -4.0123 11 1 2.5892 3.3766 -4.8188 12 1 3.9929 5.0012 -3.6914 13 1 4.9964 3.0844 -4.7867 14 6 4.2452 -0.9068 -1.2496 15 6 5.7223 -1.1404 -1.0629 16 6 6.5162 -1.4491 -2.1505 17 6 7.8732 -1.6580 -1.9806 18 17 8.8701 -2.0388 -3.3499 19 6 8.4360 -1.5694 -0.7194 20 6 7.6446 -1.2665 0.3714 21 6 6.2845 -1.0511 0.2020 22 8 5.5040 -0.7534 1.2742 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3635 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.6884 1.8465 0.8899 27 1 1.6884 1.8464 -0.8900 28 1 3.8531 0.5902 0.8558 29 1 3.9785 2.1787 0.0625 30 1 2.8499 4.0566 -1.3865 31 1 3.6962 -1.3873 -0.4398 32 1 3.9285 -1.3283 -2.2035 33 1 6.0781 -1.5227 -3.1350 34 1 9.4948 -1.7375 -0.5879 35 1 8.0841 -1.1979 1.3554 36 1 5.1261 -1.5280 1.7128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835067184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:26 Heat of formation + Delta-G solvation = -51.550070 kcal Electronic energy + Delta-G solvation = -20971.739655 eV Core-core repulsion = 17675.849901 eV Total energy + Delta-G solvation = -3295.889753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82606 -38.72719 -37.97880 -37.09816 -36.76053 -33.84871 -31.96149 -30.61458 -29.99121 -27.31914 -27.01588 -24.68327 -23.59738 -22.77783 -21.71386 -19.26244 -18.64439 -17.48323 -17.14883 -16.84455 -16.66130 -16.25757 -16.15160 -15.51563 -15.31130 -14.90597 -14.77571 -14.26995 -14.10907 -13.55950 -13.32949 -13.25469 -12.87758 -12.74547 -12.55201 -12.42044 -12.29097 -12.09244 -11.92228 -11.80279 -11.66961 -11.47419 -11.14599 -10.68505 -10.03802 -9.83391 -9.32439 -8.67573 -7.63036 -5.12802 0.19509 0.37351 1.20017 1.47498 1.48943 1.55986 2.51032 2.66300 3.32289 3.38790 3.41352 3.88521 3.93645 3.99366 4.29043 4.47781 4.57802 4.62528 4.65933 4.81933 4.84547 4.92879 5.00919 5.06318 5.12830 5.23209 5.28604 5.39484 5.58747 5.63186 5.81168 5.92379 5.96746 6.42816 6.72241 6.98998 7.29425 7.98361 8.37748 9.26449 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.006463 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.452732 B = 4331.637605 C = 5585.972538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.416 6.416 3 C 0.075 3.925 4 C 0.184 3.816 5 N -0.592 5.592 6 C -0.232 4.232 7 H 0.069 0.931 8 C -0.061 4.061 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.291 1.291 12 H -0.297 1.297 13 H -0.278 1.278 14 C 0.198 3.802 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.053 4.053 18 Cl -0.074 7.074 19 C -0.103 4.103 20 C -0.136 4.136 21 C 0.116 3.884 22 O -0.496 6.496 23 H 0.096 0.904 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.242 0.758 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.125 0.875 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -11.099 4.123 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.335 6.335 3 C -0.002 4.002 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.362 4.362 7 H 0.087 0.913 8 C -0.253 4.253 9 N -0.583 5.583 10 Si 0.793 3.207 11 H -0.219 1.219 12 H -0.223 1.223 13 H -0.204 1.204 14 C 0.072 3.928 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.079 4.079 18 Cl -0.046 7.046 19 C -0.122 4.122 20 C -0.155 4.155 21 C 0.071 3.929 22 O -0.309 6.309 23 H 0.115 0.885 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.143 0.857 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.705 -10.556 3.858 12.604 hybrid contribution -0.491 0.732 -0.980 1.318 sum 5.214 -9.825 2.878 11.489 Atomic orbital electron populations 1.22692 0.81936 1.02594 0.99065 1.87782 1.19511 1.30926 1.95326 1.23662 0.96912 0.81442 0.98233 1.20946 0.89995 0.97491 0.85666 1.44087 1.76761 1.02864 1.07434 1.19595 1.30311 0.94569 0.91711 0.91276 1.25360 1.01557 0.98551 0.99851 1.70325 1.47934 1.12893 1.27101 0.85303 0.77414 0.77790 0.80174 1.21872 1.22347 1.20353 1.19596 0.88409 0.84902 0.99909 1.21393 0.99884 0.97694 0.92960 1.20872 0.91890 0.99895 0.99130 1.20983 0.91481 1.06193 0.89282 1.98337 1.69290 1.92900 1.44039 1.21071 1.01294 1.00131 0.89695 1.21550 0.92552 1.00900 1.00461 1.18501 0.90219 0.97509 0.86694 1.84889 1.66663 1.36576 1.42733 0.88528 0.94232 0.95994 0.97043 0.92887 0.93950 0.90523 0.94754 0.91448 0.93916 0.85705 0.82529 0.82476 0.73925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 11.01 113.37 1.25 2.38 16 2 O -0.42 -17.83 10.48 -148.98 -1.56 -19.39 16 3 C 0.08 3.58 5.43 71.98 0.39 3.97 16 4 C 0.18 9.06 5.30 86.38 0.46 9.51 16 5 N -0.59 -29.03 2.47 -706.35 -1.74 -30.78 16 6 C -0.23 -12.47 9.76 84.04 0.82 -11.65 16 7 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 8 C -0.06 -3.34 5.21 84.86 0.44 -2.90 16 9 N -0.93 -52.12 7.26 21.65 0.16 -51.97 16 10 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.20 8.08 5.40 85.63 0.46 8.54 16 15 C -0.12 -4.16 5.43 -19.77 -0.11 -4.27 16 16 C -0.10 -3.33 9.45 22.27 0.21 -3.12 16 17 C -0.05 -1.56 6.32 22.33 0.14 -1.42 16 18 Cl -0.07 -1.97 28.95 -2.72 -0.08 -2.05 16 19 C -0.10 -2.64 9.82 22.28 0.22 -2.42 16 20 C -0.14 -3.59 9.99 22.36 0.22 -3.37 16 21 C 0.12 3.72 6.68 22.50 0.15 3.87 16 22 O -0.50 -15.13 10.50 -92.64 -0.97 -16.10 16 23 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 27 H 0.05 2.90 5.96 -2.39 -0.01 2.88 16 28 H 0.04 1.94 5.67 -2.39 -0.01 1.92 16 29 H 0.08 4.31 5.90 -2.39 -0.01 4.30 16 30 H 0.24 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.07 2.61 7.67 -2.39 -0.02 2.59 16 32 H 0.04 1.75 7.93 -2.39 -0.02 1.73 16 33 H 0.12 4.24 8.02 -2.91 -0.02 4.22 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.40 8.09 9.06 -74.05 -0.67 7.42 16 Total: -1.00 -62.52 315.35 2.91 -59.61 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.43 Total: 14.03 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 4.66 Total: -0.87 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.59 Total: -82.74 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -2.53 Total: -35.49 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.05 kcal Total: -62.52 2.91 -59.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.059 kcal (2) G-P(sol) polarization free energy of solvation -62.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds