Wall clock time and date at job start Fri Apr 10 2020 15:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99904 * 2 1 4 4 C 1.52995 * 109.47455 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47155 * 64.99694 * 4 3 2 6 6 C 1.36938 * 120.00471 * 270.01002 * 5 4 3 7 7 H 1.07997 * 120.00056 * 41.55817 * 6 5 4 8 8 C 1.38810 * 119.99888 * 221.56905 * 6 5 4 9 9 N 1.31617 * 120.00026 * 318.88243 * 8 6 5 10 10 Si 1.86802 * 119.99987 * 138.88230 * 8 6 5 11 11 H 1.48501 * 109.47255 * 89.99844 * 10 8 6 12 12 H 1.48503 * 109.46974 * 209.99911 * 10 8 6 13 13 H 1.48506 * 109.46996 * 329.99582 * 10 8 6 14 14 C 1.46500 * 119.99929 * 89.99830 * 5 4 3 15 15 C 1.50703 * 109.46733 * 55.25507 * 14 5 4 16 16 C 1.38732 * 120.03347 * 248.52440 * 15 14 5 17 17 O 1.35899 * 120.04834 * 0.25563 * 16 15 14 18 18 C 1.38717 * 119.90105 * 180.27515 * 16 15 14 19 19 C 1.38169 * 119.97391 * 0.02562 * 18 16 15 20 20 C 1.38225 * 120.06452 * 359.97438 * 19 18 16 21 21 C 1.38233 * 120.03418 * 68.80692 * 15 14 5 22 22 Cl 1.73600 * 119.98805 * 359.74136 * 21 15 14 23 23 H 1.08994 * 109.46713 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46458 * 299.99682 * 1 2 3 25 25 H 1.08993 * 109.47419 * 59.99886 * 1 2 3 26 26 H 1.09001 * 109.47238 * 59.99914 * 3 2 1 27 27 H 1.09003 * 109.47369 * 300.00200 * 3 2 1 28 28 H 1.08997 * 109.47116 * 305.00534 * 4 3 2 29 29 H 1.08995 * 109.47737 * 184.99597 * 4 3 2 30 30 H 0.97006 * 119.99676 * 184.56682 * 9 8 6 31 31 H 1.09004 * 109.47762 * 295.25741 * 14 5 4 32 32 H 1.09002 * 109.47244 * 175.25229 * 14 5 4 33 33 H 0.96700 * 114.00155 * 89.99966 * 17 16 15 34 34 H 1.08005 * 120.01134 * 180.02562 * 18 16 15 35 35 H 1.07995 * 119.96841 * 179.97438 * 19 18 16 36 36 H 1.08002 * 119.94613 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0967 -0.7970 -1.3370 7 1 3.3472 -1.4343 -0.8916 8 6 5.1829 -1.3578 -1.9946 9 7 5.6120 -0.8328 -3.1227 10 14 6.0356 -2.8577 -1.2786 11 1 5.3962 -4.0897 -1.8064 12 1 7.4703 -2.8414 -1.6618 13 1 5.9183 -2.8342 0.2016 14 6 4.2863 1.4007 -2.4149 15 6 5.3213 2.4272 -2.0327 16 6 4.9782 3.7701 -1.9725 17 8 3.7072 4.1609 -2.2529 18 6 5.9346 4.7133 -1.6260 19 6 7.2266 4.3143 -1.3421 20 6 7.5670 2.9760 -1.4025 21 6 6.6150 2.0324 -1.7475 22 17 7.0461 0.3525 -1.8231 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5683 0.8409 29 1 3.9785 2.1765 0.0888 30 1 6.3278 -1.2628 -3.6164 31 1 3.3809 1.9056 -2.7517 32 1 4.6743 0.7755 -3.2191 33 1 3.1228 4.1805 -1.4827 34 1 5.6693 5.7592 -1.5781 35 1 7.9711 5.0487 -1.0728 36 1 8.5776 2.6662 -1.1806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835067992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:23 Heat of formation + Delta-G solvation = -22.819495 kcal Electronic energy + Delta-G solvation = -21555.201115 eV Core-core repulsion = 18260.557212 eV Total energy + Delta-G solvation = -3294.643902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73957 -38.77207 -37.71649 -37.03387 -36.41341 -33.82187 -32.30309 -30.52656 -29.92228 -27.29733 -27.04799 -24.79980 -23.35099 -22.89816 -21.37946 -19.25981 -18.67651 -17.39016 -17.18701 -16.96735 -16.58588 -16.39676 -16.03229 -15.62901 -15.31954 -15.13711 -14.75269 -14.22430 -13.76658 -13.70171 -13.40877 -13.16255 -12.89810 -12.72895 -12.65532 -12.45570 -12.22035 -12.08822 -11.90523 -11.74403 -11.64949 -11.63656 -11.25577 -10.38098 -9.48887 -9.31176 -9.02664 -8.24158 -7.93933 -5.08778 0.35198 0.47997 1.30858 1.45354 1.55256 1.95752 2.51587 2.75295 3.09980 3.21532 3.44637 3.91525 4.12354 4.23819 4.30406 4.40895 4.52351 4.60611 4.62595 4.69682 4.71724 4.82682 4.87969 4.91418 5.07043 5.13477 5.31519 5.48794 5.52233 5.66815 5.80920 5.92648 6.14718 6.54173 6.71902 6.89932 7.32798 7.99025 8.57969 8.98563 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.010553 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.224975 B = 2652.589019 C = 4433.170036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.049 3.951 4 C 0.153 3.847 5 N -0.580 5.580 6 C -0.284 4.284 7 H 0.056 0.944 8 C 0.037 3.963 9 N -0.828 5.828 10 Si 0.857 3.143 11 H -0.290 1.290 12 H -0.288 1.288 13 H -0.284 1.284 14 C 0.160 3.840 15 C -0.113 4.113 16 C 0.100 3.900 17 O -0.500 6.500 18 C -0.151 4.151 19 C -0.098 4.098 20 C -0.148 4.148 21 C -0.040 4.040 22 Cl -0.034 7.034 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.259 0.741 31 H 0.005 0.995 32 H 0.119 0.881 33 H 0.399 0.601 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 11.528 5.079 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.029 4.029 4 C 0.026 3.974 5 N -0.302 5.302 6 C -0.412 4.412 7 H 0.073 0.927 8 C -0.163 4.163 9 N -0.468 5.468 10 Si 0.683 3.317 11 H -0.217 1.217 12 H -0.214 1.214 13 H -0.210 1.210 14 C 0.035 3.965 15 C -0.116 4.116 16 C 0.054 3.946 17 O -0.311 6.311 18 C -0.170 4.170 19 C -0.116 4.116 20 C -0.167 4.167 21 C -0.069 4.069 22 Cl -0.004 7.004 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.136 0.864 33 H 0.256 0.744 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.807 11.221 4.368 12.068 hybrid contribution 0.067 -1.224 0.642 1.384 sum -0.740 9.997 5.010 11.207 Atomic orbital electron populations 1.22803 0.81109 1.02785 1.00069 1.88041 1.20103 1.29013 1.95277 1.23292 0.96455 0.84170 0.99027 1.20870 0.91024 0.96480 0.88992 1.43635 1.78328 1.01844 1.06378 1.18686 1.02440 0.82998 1.37036 0.92664 1.25516 0.96661 0.97409 0.96750 1.69894 1.26938 1.39353 1.10630 0.86873 0.79374 0.84187 0.81220 1.21677 1.21429 1.20967 1.20506 0.91770 0.90971 0.93230 1.20967 0.95546 0.95246 0.99795 1.18388 0.86004 0.90321 0.99850 1.84757 1.19121 1.88811 1.38456 1.21612 0.93505 1.00287 1.01565 1.21208 0.96546 0.94909 0.98955 1.21414 0.99217 0.93362 1.02694 1.21622 0.94522 0.89427 1.01316 1.98553 1.95068 1.12025 1.94802 0.89821 0.92857 0.94475 0.92106 0.94465 0.94355 0.92109 0.92934 0.97703 0.86435 0.74363 0.82883 0.81975 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.41 -15.97 9.72 -148.98 -1.45 -17.42 16 3 C 0.05 1.71 6.28 71.98 0.45 2.16 16 4 C 0.15 6.16 5.96 86.38 0.52 6.67 16 5 N -0.58 -27.88 2.30 -706.34 -1.63 -29.51 16 6 C -0.28 -15.46 8.92 84.03 0.75 -14.71 16 7 H 0.06 3.23 7.47 -2.91 -0.02 3.21 16 8 C 0.04 1.99 3.15 84.86 0.27 2.26 16 9 N -0.83 -44.37 7.33 21.65 0.16 -44.21 16 10 Si 0.86 42.91 28.51 68.60 1.96 44.86 16 11 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.16 7.55 5.35 85.63 0.46 8.01 16 15 C -0.11 -4.61 4.26 -19.75 -0.08 -4.69 16 16 C 0.10 3.35 6.47 22.50 0.15 3.50 16 17 O -0.50 -15.25 12.29 -92.42 -1.14 -16.38 16 18 C -0.15 -4.09 9.99 22.37 0.22 -3.87 16 19 C -0.10 -2.55 10.04 22.25 0.22 -2.33 16 20 C -0.15 -4.82 9.83 22.31 0.22 -4.61 16 21 C -0.04 -1.64 6.29 22.31 0.14 -1.50 16 22 Cl -0.03 -1.56 19.65 -2.72 -0.05 -1.61 16 23 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 29 H 0.06 2.20 6.90 -2.39 -0.02 2.19 16 30 H 0.26 13.59 8.10 -92.70 -0.75 12.84 16 31 H 0.01 0.24 7.04 -2.39 -0.02 0.22 16 32 H 0.12 6.43 4.78 -2.39 -0.01 6.42 16 33 H 0.40 8.75 9.06 -74.06 -0.67 8.07 16 34 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -63.63 304.95 2.85 -60.77 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.45 Total: 10.53 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.56 Total: -7.03 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.47 Total: -73.72 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -2.58 Total: -33.81 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.96 Total: 44.86 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.05 Total: -1.61 kcal Total: -63.63 2.85 -60.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.954 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds