Wall clock time and date at job start Fri Apr 10 2020 15:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34677 * 116.99889 * 2 1 4 4 O 1.21409 * 120.00226 * 0.02562 * 3 2 1 5 5 C 1.48257 * 119.99988 * 180.02562 * 3 2 1 6 6 N 1.32634 * 119.02071 * 180.02562 * 5 3 2 7 7 C 1.31840 * 120.92693 * 180.02562 * 6 5 3 8 8 C 1.40251 * 118.97959 * 0.02562 * 7 6 5 9 9 C 1.47817 * 120.88600 * 179.97438 * 8 7 6 10 10 C 1.40333 * 120.34978 * 179.97438 * 9 8 7 11 11 C 1.36675 * 118.59732 * 180.02562 * 10 9 8 12 12 C 1.40896 * 119.25620 * 359.97438 * 11 10 9 13 13 C 1.40955 * 119.67422 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.40189 * 119.99763 * 180.02562 * 13 12 11 16 16 N 1.30656 * 120.00523 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99747 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46872 * 120.00024 * 17 15 13 20 20 H 1.48499 * 109.47039 * 240.00223 * 17 15 13 21 21 N 1.33807 * 120.65213 * 0.02562 * 12 11 10 22 22 C 1.31159 * 121.51419 * 359.97438 * 21 12 11 23 23 C 1.40249 * 118.22728 * 0.25113 * 8 7 6 24 24 N 1.31851 * 118.98218 * 359.48637 * 23 8 7 25 25 H 1.08998 * 109.46933 * 299.99339 * 1 2 3 26 26 H 1.08996 * 109.47247 * 59.99117 * 1 2 3 27 27 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.51312 * 180.02562 * 7 6 5 29 29 H 1.08007 * 120.70560 * 0.02562 * 10 9 8 30 30 H 1.07999 * 120.37253 * 179.73070 * 11 10 9 31 31 H 0.96996 * 120.00361 * 179.97438 * 16 15 13 32 32 H 1.07994 * 119.65404 * 180.02562 * 22 21 12 33 33 H 1.08001 * 120.50848 * 179.73094 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4022 2.2182 0.0005 5 6 3.5439 1.2776 -0.0006 6 7 4.1258 2.4695 0.0000 7 6 5.4393 2.5823 -0.0010 8 6 6.2213 1.4180 -0.0032 9 6 7.6974 1.4954 -0.0049 10 6 8.4689 0.3232 -0.0066 11 6 9.8310 0.4364 -0.0076 12 6 10.4153 1.7185 -0.0076 13 6 11.8192 1.8455 -0.0081 14 1 12.4412 0.9627 -0.0090 15 6 12.4078 3.1179 -0.0075 16 7 11.6552 4.1859 -0.0060 17 14 14.2682 3.2863 -0.0089 18 1 14.8873 1.9365 -0.0112 19 1 14.6970 4.0291 -1.2212 20 1 14.6991 4.0270 1.2038 21 7 9.6508 2.8167 -0.0060 22 6 8.3415 2.7404 -0.0050 23 6 5.5653 0.1784 -0.0097 24 7 4.2471 0.1531 -0.0031 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 5.9061 3.5562 -0.0002 29 1 7.9964 -0.6481 -0.0070 30 1 10.4524 -0.4469 -0.0045 31 1 12.0625 5.0663 -0.0052 32 1 7.7535 3.6463 -0.0042 33 1 6.1313 -0.7414 -0.0159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243010916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:53 Heat of formation + Delta-G solvation = -0.230430 kcal Electronic energy + Delta-G solvation = -20439.183557 eV Core-core repulsion = 17044.411697 eV Total energy + Delta-G solvation = -3394.771861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87718 -39.78635 -38.44141 -36.35188 -34.45509 -33.47603 -32.77510 -30.98179 -29.73417 -28.03463 -26.40769 -24.58051 -24.21911 -21.90589 -21.75960 -20.78920 -18.42022 -18.06927 -17.26869 -16.53034 -16.40261 -16.06766 -15.58829 -14.95177 -14.48677 -14.37584 -14.26324 -13.46407 -13.43054 -13.10848 -12.89435 -12.59119 -12.43434 -12.13481 -11.68226 -11.56298 -11.34158 -11.13190 -10.78855 -10.78452 -10.58333 -10.43051 -10.26980 -10.19608 -9.44164 -8.97790 -8.63357 -7.99627 -7.65128 -6.91793 -4.96215 0.51695 1.45795 2.16728 2.47207 2.63827 2.78243 2.82654 2.87674 3.00470 3.57044 4.11430 4.26181 4.40932 4.62996 4.89847 5.03853 5.11063 5.18785 5.31752 5.40466 5.48715 5.57251 5.69748 5.86193 6.09728 6.26758 6.33079 6.48491 6.59631 6.64365 6.93328 7.09752 7.20830 7.38922 7.55709 7.70836 7.72948 8.09156 8.32779 8.39667 9.61392 9.76386 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.056650 B = 0.002963 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.146610 B = 9447.374792 C = 9926.376068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.338 6.338 3 C 0.546 3.454 4 O -0.488 6.488 5 C 0.205 3.795 6 N -0.445 5.445 7 C 0.096 3.904 8 C -0.019 4.019 9 C -0.287 4.287 10 C -0.028 4.028 11 C -0.263 4.263 12 C 0.243 3.757 13 C -0.374 4.374 14 H 0.095 0.905 15 C 0.054 3.946 16 N -0.680 5.680 17 Si 0.917 3.083 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.268 1.268 21 N -0.486 5.486 22 C 0.176 3.824 23 C 0.091 3.909 24 N -0.452 5.452 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.284 0.716 32 H 0.128 0.872 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -4.936 -0.006 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.253 6.253 3 C 0.386 3.614 4 O -0.372 6.372 5 C -0.058 4.058 6 N -0.160 5.160 7 C -0.073 4.073 8 C -0.025 4.025 9 C -0.294 4.294 10 C -0.051 4.051 11 C -0.285 4.285 12 C 0.122 3.878 13 C -0.402 4.402 14 H 0.113 0.887 15 C -0.175 4.175 16 N -0.298 5.298 17 Si 0.740 3.260 18 H -0.179 1.179 19 H -0.192 1.192 20 H -0.192 1.192 21 N -0.197 5.197 22 C 0.002 3.998 23 C -0.078 4.078 24 N -0.167 5.167 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.191 0.809 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.145 0.855 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.425 -3.674 -0.002 8.284 hybrid contribution 1.101 -0.636 0.002 1.271 sum -6.324 -4.310 0.000 7.653 Atomic orbital electron populations 1.23302 0.76290 1.03714 1.02519 1.86653 1.22885 1.31713 1.84012 1.20012 0.86635 0.81555 0.73160 1.90822 1.65535 1.36111 1.44721 1.20652 0.91803 0.85463 1.07891 1.67771 1.12797 1.26640 1.08793 1.23234 0.87217 0.99255 0.97630 1.20884 0.95783 0.94647 0.91225 1.18744 0.88863 0.95665 1.26157 1.20664 0.93801 0.96030 0.94591 1.21477 0.94391 0.98157 1.14452 1.18742 0.93805 0.86973 0.88299 1.20129 0.90982 0.93795 1.35268 0.88653 1.26346 1.01691 0.95573 0.93921 1.70066 1.37629 0.99221 1.22908 0.86080 0.80553 0.80185 0.79183 1.17895 1.19246 1.19242 1.68829 1.03086 1.30191 1.17621 1.22825 0.92195 0.94343 0.90405 1.23208 0.88833 0.97983 0.97809 1.68059 1.08740 1.31088 1.08841 0.91881 0.91887 0.87907 0.80901 0.87792 0.87543 0.90483 0.85486 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.34 -5.04 10.35 -40.43 -0.42 -5.46 16 3 C 0.55 9.60 7.98 34.85 0.28 9.88 16 4 O -0.49 -9.27 16.64 -19.19 -0.32 -9.59 16 5 C 0.20 3.83 7.59 -156.91 -1.19 2.64 16 6 N -0.45 -8.46 10.10 -10.82 -0.11 -8.57 16 7 C 0.10 1.67 10.71 -16.79 -0.18 1.49 16 8 C -0.02 -0.34 5.92 -104.47 -0.62 -0.96 16 9 C -0.29 -5.56 5.92 -104.46 -0.62 -6.18 16 10 C -0.03 -0.54 9.49 -39.36 -0.37 -0.91 16 11 C -0.26 -5.47 9.76 -39.14 -0.38 -5.85 16 12 C 0.24 5.72 6.55 -84.97 -0.56 5.17 16 13 C -0.37 -8.50 9.12 -37.82 -0.34 -8.85 16 14 H 0.10 1.97 7.85 -52.48 -0.41 1.56 16 15 C 0.05 1.18 5.50 -17.32 -0.10 1.09 16 16 N -0.68 -15.64 11.44 55.56 0.64 -15.01 16 17 Si 0.92 15.78 29.56 -169.99 -5.03 10.75 16 18 H -0.26 -4.30 7.11 56.52 0.40 -3.90 16 19 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 20 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 21 N -0.49 -11.67 7.83 -10.83 -0.08 -11.76 16 22 C 0.18 3.68 10.63 -17.11 -0.18 3.49 16 23 C 0.09 1.53 10.71 -16.79 -0.18 1.35 16 24 N -0.45 -8.08 10.13 -10.82 -0.11 -8.19 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.17 2.62 6.35 -52.49 -0.33 2.28 16 29 H 0.10 1.64 6.38 -52.48 -0.34 1.30 16 30 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.28 5.80 8.29 -40.82 -0.34 5.47 16 32 H 0.13 2.32 6.30 -52.49 -0.33 1.99 16 33 H 0.17 2.38 6.39 -52.49 -0.34 2.04 16 LS Contribution 301.86 15.07 4.55 4.55 Total: -1.00 -28.05 301.86 -6.83 -34.88 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -2.57 Total: 4.61 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.38 Total: 3.79 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.33 Total: -43.53 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.74 Total: -15.05 kcal Atomic # 14 Polarization: 15.78 SS G_CDS: -5.03 Total: 10.75 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.05 -6.83 -34.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243010916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.647 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds