Wall clock time and date at job start Fri Apr 10 2020 15:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34677 * 116.99889 * 2 1 4 4 O 1.21409 * 120.00226 * 0.02562 * 3 2 1 5 5 C 1.48257 * 119.99988 * 180.02562 * 3 2 1 6 6 N 1.32634 * 119.02071 * 180.02562 * 5 3 2 7 7 C 1.31840 * 120.92693 * 180.02562 * 6 5 3 8 8 C 1.40251 * 118.97959 * 0.02562 * 7 6 5 9 9 C 1.47817 * 120.88600 * 179.97438 * 8 7 6 10 10 C 1.40333 * 120.34978 * 179.97438 * 9 8 7 11 11 C 1.36675 * 118.59732 * 180.02562 * 10 9 8 12 12 C 1.40896 * 119.25620 * 359.97438 * 11 10 9 13 13 C 1.40955 * 119.67422 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.40189 * 119.99763 * 180.02562 * 13 12 11 16 16 N 1.30656 * 120.00523 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99747 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46872 * 120.00024 * 17 15 13 20 20 H 1.48499 * 109.47039 * 240.00223 * 17 15 13 21 21 N 1.33807 * 120.65213 * 0.02562 * 12 11 10 22 22 C 1.31159 * 121.51419 * 359.97438 * 21 12 11 23 23 C 1.40249 * 118.22728 * 0.25113 * 8 7 6 24 24 N 1.31851 * 118.98218 * 359.48637 * 23 8 7 25 25 H 1.08998 * 109.46933 * 299.99339 * 1 2 3 26 26 H 1.08996 * 109.47247 * 59.99117 * 1 2 3 27 27 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.51312 * 180.02562 * 7 6 5 29 29 H 1.08007 * 120.70560 * 0.02562 * 10 9 8 30 30 H 1.07999 * 120.37253 * 179.73070 * 11 10 9 31 31 H 0.96996 * 120.00361 * 179.97438 * 16 15 13 32 32 H 1.07994 * 119.65404 * 180.02562 * 22 21 12 33 33 H 1.08001 * 120.50848 * 179.73094 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4022 2.2182 0.0005 5 6 3.5439 1.2776 -0.0006 6 7 4.1258 2.4695 0.0000 7 6 5.4393 2.5823 -0.0010 8 6 6.2213 1.4180 -0.0032 9 6 7.6974 1.4954 -0.0049 10 6 8.4689 0.3232 -0.0066 11 6 9.8310 0.4364 -0.0076 12 6 10.4153 1.7185 -0.0076 13 6 11.8192 1.8455 -0.0081 14 1 12.4412 0.9627 -0.0090 15 6 12.4078 3.1179 -0.0075 16 7 11.6552 4.1859 -0.0060 17 14 14.2682 3.2863 -0.0089 18 1 14.8873 1.9365 -0.0112 19 1 14.6970 4.0291 -1.2212 20 1 14.6991 4.0270 1.2038 21 7 9.6508 2.8167 -0.0060 22 6 8.3415 2.7404 -0.0050 23 6 5.5653 0.1784 -0.0097 24 7 4.2471 0.1531 -0.0031 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 5.9061 3.5562 -0.0002 29 1 7.9964 -0.6481 -0.0070 30 1 10.4524 -0.4469 -0.0045 31 1 12.0625 5.0663 -0.0052 32 1 7.7535 3.6463 -0.0042 33 1 6.1313 -0.7414 -0.0159 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243010916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:53 Heat of formation + Delta-G solvation = -16.215400 kcal Electronic energy + Delta-G solvation = -20439.876718 eV Core-core repulsion = 17044.411697 eV Total energy + Delta-G solvation = -3395.465021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28150 -41.11085 -40.01495 -37.62073 -36.00127 -34.90694 -34.29734 -32.56634 -31.23247 -29.16908 -27.78050 -26.02942 -25.65362 -23.37873 -23.25958 -22.25212 -19.74088 -19.62103 -18.65000 -17.92154 -17.63222 -17.52331 -17.07908 -16.34031 -15.89055 -15.82537 -15.71425 -14.82394 -14.65374 -14.37754 -14.36675 -14.11332 -13.87902 -13.22626 -13.04456 -12.96627 -12.77787 -12.67982 -12.19613 -12.01401 -11.85962 -11.83117 -11.71701 -11.68729 -10.97768 -10.41502 -10.21463 -9.59615 -9.23219 -8.47819 -6.61101 -0.92561 0.06295 0.68850 1.13136 1.25692 1.32283 1.41769 1.57400 1.58612 2.15752 2.62068 2.89939 2.92554 3.32686 3.50786 3.82536 3.85077 3.90523 4.08551 4.18287 4.28453 4.33352 4.41280 4.69156 4.71259 4.77430 4.98179 5.04032 5.06494 5.23990 5.38454 5.56260 5.68825 5.90541 5.98990 6.12232 6.42003 6.51870 6.77906 6.91126 8.02727 8.22958 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.056650 B = 0.002963 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.146610 B = 9447.374792 C = 9926.376068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.546 3.454 4 O -0.508 6.508 5 C 0.203 3.797 6 N -0.467 5.467 7 C 0.102 3.898 8 C -0.027 4.027 9 C -0.278 4.278 10 C -0.025 4.025 11 C -0.280 4.280 12 C 0.216 3.784 13 C -0.416 4.416 14 H 0.104 0.896 15 C 0.017 3.983 16 N -0.727 5.727 17 Si 0.991 3.009 18 H -0.248 1.248 19 H -0.266 1.266 20 H -0.266 1.266 21 N -0.523 5.523 22 C 0.155 3.845 23 C 0.106 3.894 24 N -0.457 5.457 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.140 0.860 28 H 0.191 0.809 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.288 0.712 32 H 0.144 0.856 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 -6.637 -0.008 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.255 6.255 3 C 0.388 3.612 4 O -0.394 6.394 5 C -0.061 4.061 6 N -0.182 5.182 7 C -0.066 4.066 8 C -0.032 4.032 9 C -0.285 4.285 10 C -0.047 4.047 11 C -0.302 4.302 12 C 0.094 3.906 13 C -0.444 4.444 14 H 0.122 0.878 15 C -0.208 4.208 16 N -0.346 5.346 17 Si 0.810 3.190 18 H -0.171 1.171 19 H -0.191 1.191 20 H -0.191 1.191 21 N -0.235 5.235 22 C -0.015 4.015 23 C -0.063 4.063 24 N -0.172 5.172 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.207 0.793 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.577 -5.394 -0.003 10.132 hybrid contribution 0.999 -0.232 0.002 1.025 sum -7.578 -5.626 -0.001 9.438 Atomic orbital electron populations 1.23739 0.73480 1.06372 1.03025 1.86636 1.25573 1.30077 1.83187 1.19960 0.86334 0.82094 0.72831 1.90809 1.65859 1.36963 1.45774 1.21083 0.92784 0.85689 1.06518 1.67863 1.13359 1.27078 1.09938 1.23570 0.86923 1.00187 0.95961 1.20832 0.94865 0.95364 0.92168 1.18849 0.89658 0.95350 1.24665 1.21047 0.93200 0.97531 0.92959 1.21666 0.95569 0.97734 1.15197 1.19194 0.94591 0.88060 0.88746 1.20435 0.91314 0.94812 1.37864 0.87809 1.27195 1.06040 0.94853 0.92753 1.70145 1.39602 0.99809 1.25060 0.85004 0.74833 0.80193 0.78940 1.17137 1.19081 1.19069 1.68785 1.04365 1.31225 1.19123 1.23189 0.91819 0.95910 0.90606 1.23723 0.88619 0.98692 0.95236 1.68184 1.09060 1.30545 1.09458 0.91413 0.91418 0.84196 0.79270 0.83981 0.86026 0.90099 0.83914 0.78286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.34 -9.33 10.35 -55.86 -0.58 -9.91 16 3 C 0.55 18.30 7.98 70.49 0.56 18.86 16 4 O -0.51 -18.68 16.64 20.13 0.34 -18.34 16 5 C 0.20 7.20 7.59 137.50 1.04 8.24 16 6 N -0.47 -17.03 10.10 -188.16 -1.90 -18.93 16 7 C 0.10 3.38 10.71 85.18 0.91 4.29 16 8 C -0.03 -0.88 5.92 -19.76 -0.12 -1.00 16 9 C -0.28 -10.37 5.92 -19.76 -0.12 -10.49 16 10 C -0.02 -0.90 9.49 22.41 0.21 -0.68 16 11 C -0.28 -11.53 9.76 22.55 0.22 -11.31 16 12 C 0.22 10.42 6.55 40.16 0.26 10.68 16 13 C -0.42 -19.51 9.12 23.41 0.21 -19.30 16 14 H 0.10 4.42 7.85 -2.91 -0.02 4.39 16 15 C 0.02 0.76 5.50 85.34 0.47 1.23 16 16 N -0.73 -34.82 11.44 21.86 0.25 -34.56 16 17 Si 0.99 32.93 29.56 68.60 2.03 34.96 16 18 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 19 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16 20 H -0.27 -8.64 7.11 99.48 0.71 -7.93 16 21 N -0.52 -25.83 7.83 -188.18 -1.47 -27.31 16 22 C 0.16 6.54 10.63 85.26 0.91 7.45 16 23 C 0.11 3.20 10.71 85.18 0.91 4.12 16 24 N -0.46 -15.06 10.13 -188.15 -1.91 -16.97 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.19 5.50 6.35 -2.91 -0.02 5.48 16 29 H 0.14 3.90 6.38 -2.91 -0.02 3.88 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.29 12.32 8.29 -92.71 -0.77 11.55 16 32 H 0.14 5.25 6.30 -2.91 -0.02 5.23 16 33 H 0.20 4.69 6.39 -2.91 -0.02 4.67 16 Total: -1.00 -61.65 301.86 4.61 -57.05 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 1.17 Total: 20.28 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 6.68 Total: 13.74 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -5.03 Total: -97.77 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.24 Total: -28.26 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Total: -61.65 4.61 -57.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243010916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.833 kcal (2) G-P(sol) polarization free energy of solvation -61.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds