Wall clock time and date at job start Fri Apr 10 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34704 * 117.00159 * 2 1 4 4 O 1.21473 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.47736 * 120.00311 * 179.97438 * 3 2 1 6 6 C 1.39692 * 120.50067 * 0.02562 * 5 3 2 7 7 N 1.31702 * 120.83222 * 180.02562 * 6 5 3 8 8 C 1.31800 * 122.02427 * 359.96985 * 7 6 5 9 9 C 1.39464 * 120.92110 * 359.97438 * 8 7 6 10 10 C 1.48317 * 120.46848 * 180.02562 * 9 8 7 11 11 C 1.40036 * 119.98299 * 180.02562 * 10 9 8 12 12 N 1.32175 * 120.29507 * 180.02562 * 11 10 9 13 13 C 1.31884 * 120.28438 * 359.97438 * 12 11 10 14 14 C 1.40822 * 119.96441 * 0.02562 * 13 12 11 15 15 C 1.41327 * 120.14606 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00292 * 9.05490 * 15 14 13 17 17 C 1.40046 * 119.99888 * 189.05371 * 15 14 13 18 18 N 1.30730 * 119.99962 * 191.66483 * 17 15 14 19 19 Si 1.86800 * 120.00114 * 11.66499 * 17 15 14 20 20 H 1.48511 * 109.46927 * 269.99930 * 19 17 15 21 21 H 1.48492 * 109.47346 * 29.99837 * 19 17 15 22 22 H 1.48501 * 109.47327 * 150.00315 * 19 17 15 23 23 N 1.32515 * 119.98832 * 0.30288 * 10 9 8 24 24 C 1.39559 * 119.05716 * 0.29809 * 9 8 7 25 25 H 1.09005 * 109.46951 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47080 * 299.99901 * 1 2 3 27 27 H 1.08999 * 109.47074 * 60.00187 * 1 2 3 28 28 H 1.08002 * 119.58696 * 0.02562 * 6 5 3 29 29 H 1.08004 * 119.53655 * 180.02562 * 8 7 6 30 30 H 1.08002 * 119.84689 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.01581 * 180.02562 * 13 12 11 32 32 H 0.97002 * 120.00512 * 354.90381 * 18 17 15 33 33 H 1.07998 * 120.91304 * 179.71994 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3100 0.1127 0.0006 7 7 5.6256 0.1741 0.0016 8 6 6.2716 1.3228 0.0021 9 6 5.5801 2.5340 0.0009 10 6 6.3174 3.8209 0.0009 11 6 5.6128 5.0311 0.0003 12 7 6.2635 6.1816 -0.0002 13 6 7.5822 6.1997 0.0003 14 6 8.3023 4.9895 0.0008 15 6 9.7155 5.0045 0.0008 16 1 10.2458 5.9339 0.1476 17 6 10.4284 3.8142 -0.1894 18 7 11.7159 3.7804 0.0348 19 14 9.5396 2.2748 -0.7637 20 1 9.0627 1.5094 0.4163 21 1 8.3790 2.6586 -1.6067 22 1 10.4706 1.4324 -1.5568 23 7 7.6425 3.8251 -0.0041 24 6 4.1847 2.5177 0.0057 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.8211 -0.8504 -0.0003 29 1 7.3517 1.3263 0.0025 30 1 4.5328 5.0243 0.0003 31 1 8.1096 7.1423 0.0002 32 1 12.1904 4.5956 0.2611 33 1 3.6191 3.4378 0.0095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243144253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:39 Heat of formation + Delta-G solvation = -18.878926 kcal Electronic energy + Delta-G solvation = -21147.970563 eV Core-core repulsion = 17752.390043 eV Total energy + Delta-G solvation = -3395.580520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90922 -39.94667 -39.08408 -36.63859 -34.45643 -33.64904 -32.75549 -31.95892 -29.67889 -28.01958 -26.27578 -24.81332 -24.16734 -22.90626 -21.40695 -20.77214 -18.74563 -18.08691 -17.50596 -16.92537 -16.56674 -16.44013 -15.73264 -15.36591 -15.18969 -14.36622 -14.13837 -13.75104 -13.46786 -13.24031 -13.13034 -13.10512 -12.91390 -12.38717 -12.16541 -11.53601 -11.19307 -11.15625 -11.04468 -10.91317 -10.48077 -10.11607 -9.83879 -9.75066 -9.48227 -9.28049 -9.05540 -8.02472 -7.93306 -7.42210 -5.10228 0.42431 0.88894 2.16383 2.38431 2.41655 2.56833 3.25854 3.38816 3.67891 3.81219 4.04393 4.30464 4.38802 4.51040 4.65890 4.73158 4.85741 4.92338 4.93894 5.21861 5.24990 5.27650 5.43276 5.54472 5.80298 5.82071 6.05067 6.06568 6.25308 6.44176 6.57245 6.62905 7.08584 7.14370 7.50620 7.69133 7.82344 7.88954 8.22866 8.63133 9.10440 9.68065 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.004816 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.105275 B = 5812.962224 C = 6862.037869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.519 3.481 4 O -0.503 6.503 5 C -0.188 4.188 6 C 0.154 3.846 7 N -0.490 5.490 8 C 0.151 3.849 9 C -0.082 4.082 10 C 0.161 3.839 11 C -0.099 4.099 12 N -0.419 5.419 13 C -0.033 4.033 14 C 0.201 3.799 15 C -0.449 4.449 16 H 0.092 0.908 17 C 0.044 3.956 18 N -0.784 5.784 19 Si 1.129 2.871 20 H -0.276 1.276 21 H -0.269 1.269 22 H -0.316 1.316 23 N -0.533 5.533 24 C 0.004 3.996 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.289 0.711 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 -7.981 -0.410 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.363 3.637 4 O -0.391 6.391 5 C -0.191 4.191 6 C -0.005 4.005 7 N -0.197 5.197 8 C -0.005 4.005 9 C -0.086 4.086 10 C 0.017 3.983 11 C -0.256 4.256 12 N -0.129 5.129 13 C -0.205 4.205 14 C 0.077 3.923 15 C -0.481 4.481 16 H 0.110 0.890 17 C -0.180 4.180 18 N -0.405 5.405 19 Si 0.962 3.038 20 H -0.205 1.205 21 H -0.196 1.196 22 H -0.248 1.248 23 N -0.255 5.255 24 C -0.022 4.022 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.188 0.812 29 H 0.192 0.808 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.411 -9.944 -0.689 16.710 hybrid contribution -0.744 2.744 0.490 2.885 sum -14.154 -7.200 -0.199 15.882 Atomic orbital electron populations 1.23296 0.75775 1.03815 1.02750 1.86528 1.23698 1.32443 1.84422 1.20916 0.88574 0.81543 0.72634 1.90851 1.66609 1.35968 1.45690 1.19954 0.90238 0.95919 1.13036 1.23276 0.89411 0.97746 0.90040 1.67878 1.09359 1.29014 1.13493 1.23943 1.02259 0.86330 0.87961 1.19601 0.92455 0.94190 1.02311 1.19912 0.90877 0.91375 0.96118 1.22456 0.99138 0.87793 1.16165 1.67737 1.09863 1.28865 1.06449 1.23246 0.89772 0.98191 1.09324 1.19319 0.94852 0.87765 0.90408 1.20810 0.89784 0.97992 1.39551 0.89003 1.27755 0.95180 1.04697 0.90390 1.70591 1.09674 1.32977 1.27223 0.82590 0.72412 0.71202 0.77569 1.20473 1.19611 1.24773 1.67638 1.06536 1.28513 1.22845 1.21798 0.93282 0.97591 0.89553 0.87869 0.91735 0.91737 0.81222 0.80753 0.84502 0.83974 0.89892 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.79 9.84 -40.50 -0.40 -4.19 16 3 C 0.52 6.89 7.90 34.61 0.27 7.16 16 4 O -0.50 -7.75 16.20 -19.25 -0.31 -8.06 16 5 C -0.19 -2.65 5.88 -104.88 -0.62 -3.26 16 6 C 0.15 2.08 10.78 -17.06 -0.18 1.90 16 7 N -0.49 -8.02 10.33 -12.61 -0.13 -8.15 16 8 C 0.15 2.79 10.72 -17.11 -0.18 2.60 16 9 C -0.08 -1.52 5.89 -104.80 -0.62 -2.13 16 10 C 0.16 3.47 6.74 -82.75 -0.56 2.91 16 11 C -0.10 -2.08 10.63 -16.73 -0.18 -2.26 16 12 N -0.42 -9.45 10.47 -12.05 -0.13 -9.58 16 13 C -0.03 -0.76 10.98 -16.55 -0.18 -0.94 16 14 C 0.20 4.91 6.30 -84.84 -0.53 4.38 16 15 C -0.45 -11.15 9.56 -37.73 -0.36 -11.51 16 16 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.04 1.09 5.52 -17.34 -0.10 1.00 16 18 N -0.78 -19.66 13.65 55.55 0.76 -18.90 16 19 Si 1.13 25.51 23.61 -169.99 -4.01 21.50 16 20 H -0.28 -5.99 6.03 56.52 0.34 -5.65 16 21 H -0.27 -6.10 6.23 56.52 0.35 -5.75 16 22 H -0.32 -7.04 7.11 56.52 0.40 -6.64 16 23 N -0.53 -12.68 4.31 -7.50 -0.03 -12.71 16 24 C 0.00 0.06 9.07 -38.50 -0.35 -0.29 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.17 1.72 7.61 -52.49 -0.40 1.32 16 29 H 0.18 3.48 3.25 -52.48 -0.17 3.31 16 30 H 0.14 2.48 6.25 -52.49 -0.33 2.15 16 31 H 0.14 2.94 8.06 -52.48 -0.42 2.52 16 32 H 0.29 6.87 8.73 -40.82 -0.36 6.52 16 33 H 0.15 2.29 5.98 -52.49 -0.31 1.98 16 LS Contribution 290.65 15.07 4.38 4.38 Total: -1.00 -28.15 290.65 -4.98 -33.13 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.59 Total: 1.68 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.52 Total: 0.90 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.47 Total: -49.34 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.71 Total: -12.25 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -4.01 Total: 21.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.15 -4.98 -33.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243144253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.248 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds