Wall clock time and date at job start Fri Apr 10 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34704 * 117.00159 * 2 1 4 4 O 1.21473 * 119.99872 * 359.97438 * 3 2 1 5 5 C 1.47736 * 120.00311 * 179.97438 * 3 2 1 6 6 C 1.39692 * 120.50067 * 0.02562 * 5 3 2 7 7 N 1.31702 * 120.83222 * 180.02562 * 6 5 3 8 8 C 1.31800 * 122.02427 * 359.96985 * 7 6 5 9 9 C 1.39464 * 120.92110 * 359.97438 * 8 7 6 10 10 C 1.48317 * 120.46848 * 180.02562 * 9 8 7 11 11 C 1.40036 * 119.98299 * 180.02562 * 10 9 8 12 12 N 1.32175 * 120.29507 * 180.02562 * 11 10 9 13 13 C 1.31884 * 120.28438 * 359.97438 * 12 11 10 14 14 C 1.40822 * 119.96441 * 0.02562 * 13 12 11 15 15 C 1.41327 * 120.14606 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00292 * 9.05490 * 15 14 13 17 17 C 1.40046 * 119.99888 * 189.05371 * 15 14 13 18 18 N 1.30730 * 119.99962 * 191.66483 * 17 15 14 19 19 Si 1.86800 * 120.00114 * 11.66499 * 17 15 14 20 20 H 1.48511 * 109.46927 * 269.99930 * 19 17 15 21 21 H 1.48492 * 109.47346 * 29.99837 * 19 17 15 22 22 H 1.48501 * 109.47327 * 150.00315 * 19 17 15 23 23 N 1.32515 * 119.98832 * 0.30288 * 10 9 8 24 24 C 1.39559 * 119.05716 * 0.29809 * 9 8 7 25 25 H 1.09005 * 109.46951 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47080 * 299.99901 * 1 2 3 27 27 H 1.08999 * 109.47074 * 60.00187 * 1 2 3 28 28 H 1.08002 * 119.58696 * 0.02562 * 6 5 3 29 29 H 1.08004 * 119.53655 * 180.02562 * 8 7 6 30 30 H 1.08002 * 119.84689 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.01581 * 180.02562 * 13 12 11 32 32 H 0.97002 * 120.00512 * 354.90381 * 18 17 15 33 33 H 1.07998 * 120.91304 * 179.71994 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3100 0.1127 0.0006 7 7 5.6256 0.1741 0.0016 8 6 6.2716 1.3228 0.0021 9 6 5.5801 2.5340 0.0009 10 6 6.3174 3.8209 0.0009 11 6 5.6128 5.0311 0.0003 12 7 6.2635 6.1816 -0.0002 13 6 7.5822 6.1997 0.0003 14 6 8.3023 4.9895 0.0008 15 6 9.7155 5.0045 0.0008 16 1 10.2458 5.9339 0.1476 17 6 10.4284 3.8142 -0.1894 18 7 11.7159 3.7804 0.0348 19 14 9.5396 2.2748 -0.7637 20 1 9.0627 1.5094 0.4163 21 1 8.3790 2.6586 -1.6067 22 1 10.4706 1.4324 -1.5568 23 7 7.6425 3.8251 -0.0041 24 6 4.1847 2.5177 0.0057 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.8211 -0.8504 -0.0003 29 1 7.3517 1.3263 0.0025 30 1 4.5328 5.0243 0.0003 31 1 8.1096 7.1423 0.0002 32 1 12.1904 4.5956 0.2611 33 1 3.6191 3.4378 0.0095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243144253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:39 Heat of formation + Delta-G solvation = -36.717396 kcal Electronic energy + Delta-G solvation = -21148.744098 eV Core-core repulsion = 17752.390043 eV Total energy + Delta-G solvation = -3396.354054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.09508 -41.34896 -40.49456 -37.59288 -36.28084 -35.23146 -34.23524 -33.41405 -31.25466 -28.77847 -27.99757 -26.21598 -25.45723 -24.44123 -22.96960 -21.98377 -20.57953 -19.27684 -18.71839 -18.29426 -17.78826 -17.46200 -17.32730 -16.78979 -16.71708 -15.91974 -15.47366 -15.08802 -14.89370 -14.62222 -14.59722 -14.49936 -14.19429 -13.65520 -13.22639 -13.04257 -12.98651 -12.85832 -12.17012 -11.98374 -11.83604 -11.82471 -11.50709 -11.21406 -11.07616 -10.77253 -10.65165 -9.81322 -9.61616 -9.25373 -6.98011 -0.83004 -0.44765 0.49397 0.74972 1.34536 1.44434 1.49769 1.58553 1.88296 2.25199 2.42755 2.65944 2.99797 3.22227 3.42894 3.48541 3.55998 3.62671 3.84360 3.91021 4.12760 4.18273 4.34130 4.39189 4.43836 4.65929 4.73000 4.79146 4.84259 4.95612 5.19349 5.25701 5.26654 5.35278 5.82320 6.02965 6.37724 6.51538 6.62522 6.84869 7.31792 7.80405 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.004816 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.105275 B = 5812.962224 C = 6862.037869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.527 3.473 4 O -0.526 6.526 5 C -0.183 4.183 6 C 0.175 3.825 7 N -0.499 5.499 8 C 0.142 3.858 9 C -0.105 4.105 10 C 0.155 3.845 11 C -0.091 4.091 12 N -0.426 5.426 13 C -0.048 4.048 14 C 0.192 3.808 15 C -0.476 4.476 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.807 5.807 19 Si 1.152 2.848 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.314 1.314 23 N -0.546 5.546 24 C 0.015 3.985 25 H 0.138 0.862 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.211 0.789 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.157 0.843 32 H 0.290 0.710 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 -9.777 -0.437 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.372 3.628 4 O -0.416 6.416 5 C -0.186 4.186 6 C 0.016 3.984 7 N -0.207 5.207 8 C -0.014 4.014 9 C -0.109 4.109 10 C 0.012 3.988 11 C -0.248 4.248 12 N -0.137 5.137 13 C -0.218 4.218 14 C 0.066 3.934 15 C -0.509 4.509 16 H 0.104 0.896 17 C -0.198 4.198 18 N -0.428 5.428 19 Si 0.983 3.017 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.245 1.245 23 N -0.269 5.269 24 C -0.011 4.011 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.173 0.827 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.101 0.899 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.611 -11.735 -0.708 20.350 hybrid contribution -0.105 3.199 0.505 3.240 sum -16.716 -8.536 -0.203 18.771 Atomic orbital electron populations 1.23668 0.73628 1.06230 1.02858 1.86513 1.25641 1.30648 1.83616 1.20659 0.87988 0.82010 0.72137 1.90853 1.66952 1.36966 1.46866 1.20053 0.91167 0.95396 1.11982 1.23892 0.88283 0.99207 0.87024 1.67922 1.10742 1.27894 1.14131 1.23675 1.01716 0.87125 0.88893 1.19419 0.93388 0.92755 1.05293 1.20402 0.90308 0.93199 0.94889 1.23059 1.00689 0.87258 1.13773 1.67810 1.09624 1.29597 1.06624 1.23432 0.90102 0.98416 1.09840 1.19480 0.94945 0.88654 0.90334 1.20799 0.90308 0.97940 1.41840 0.89622 1.28334 0.95373 1.05993 0.90129 1.70602 1.09968 1.33128 1.29127 0.82309 0.71650 0.70094 0.77639 1.19568 1.20234 1.24542 1.67626 1.07865 1.28421 1.22993 1.21862 0.92059 0.98917 0.88284 0.84350 0.91670 0.91669 0.77274 0.82687 0.81256 0.82557 0.89882 0.81806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.95 9.84 -56.13 -0.55 -6.51 16 3 C 0.53 12.07 7.90 70.33 0.56 12.63 16 4 O -0.53 -14.61 16.20 19.92 0.32 -14.29 16 5 C -0.18 -4.51 5.88 -20.03 -0.12 -4.63 16 6 C 0.17 4.05 10.78 85.06 0.92 4.96 16 7 N -0.50 -15.11 10.33 -193.80 -2.00 -17.11 16 8 C 0.14 5.06 10.72 84.99 0.91 5.97 16 9 C -0.10 -3.72 5.89 -19.98 -0.12 -3.84 16 10 C 0.16 6.56 6.74 42.16 0.28 6.84 16 11 C -0.09 -3.66 10.63 85.08 0.90 -2.75 16 12 N -0.43 -18.77 10.47 -192.05 -2.01 -20.78 16 13 C -0.05 -2.22 10.98 85.32 0.94 -1.28 16 14 C 0.19 9.48 6.30 40.23 0.25 9.74 16 15 C -0.48 -24.39 9.56 23.47 0.22 -24.16 16 16 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 17 C 0.02 1.14 5.52 85.30 0.47 1.61 16 18 N -0.81 -41.57 13.65 21.84 0.30 -41.27 16 19 Si 1.15 52.50 23.61 68.60 1.62 54.12 16 20 H -0.27 -11.67 6.03 99.48 0.60 -11.07 16 21 H -0.27 -12.61 6.23 99.48 0.62 -11.99 16 22 H -0.31 -13.94 7.11 99.48 0.71 -13.24 16 23 N -0.55 -26.07 4.31 -177.64 -0.77 -26.84 16 24 C 0.02 0.43 9.07 22.97 0.21 0.64 16 25 H 0.14 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.21 3.14 7.61 -2.91 -0.02 3.11 16 29 H 0.16 6.15 3.25 -2.91 -0.01 6.14 16 30 H 0.17 5.62 6.25 -2.91 -0.02 5.60 16 31 H 0.16 6.52 8.06 -2.91 -0.02 6.50 16 32 H 0.29 14.27 8.73 -92.71 -0.81 13.46 16 33 H 0.16 4.36 5.98 -2.91 -0.02 4.34 16 Total: -1.00 -60.78 290.65 4.48 -56.29 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.95 Total: 9.14 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.63 Total: 7.24 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.48 Total: -106.00 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.23 Total: -20.79 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 1.62 Total: 54.12 kcal Total: -60.78 4.48 -56.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243144253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.577 kcal (2) G-P(sol) polarization free energy of solvation -60.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds