Wall clock time and date at job start Fri Apr 10 2020 15:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00269 * 2 1 4 4 C 1.53005 * 109.47358 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46877 * 65.00139 * 4 3 2 6 6 C 1.36888 * 119.99660 * 265.92223 * 5 4 3 7 7 H 1.08005 * 120.00222 * 130.31426 * 6 5 4 8 8 C 1.39003 * 119.99915 * 310.30505 * 6 5 4 9 9 N 1.31392 * 120.00621 * 349.54588 * 8 6 5 10 10 Si 1.86808 * 119.99806 * 169.53917 * 8 6 5 11 11 H 1.48502 * 109.47103 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47136 * 120.00497 * 10 8 6 13 13 H 1.48501 * 109.47119 * 240.00173 * 10 8 6 14 14 C 1.34780 * 119.99928 * 85.91817 * 5 4 3 15 15 O 1.21719 * 120.00220 * 2.61379 * 14 5 4 16 16 C 1.46563 * 119.99515 * 182.61186 * 14 5 4 17 17 C 1.36777 * 126.17424 * 174.33911 * 16 14 5 18 18 N 1.30943 * 113.92215 * 179.75250 * 17 16 14 19 19 C 1.29377 * 117.46205 * 0.51473 * 18 17 16 20 20 C 1.50707 * 124.70319 * 179.76733 * 19 18 17 21 21 N 1.46893 * 109.47194 * 89.69598 * 20 19 18 22 22 S 1.70927 * 110.59692 * 359.49928 * 19 18 17 23 23 H 1.09004 * 109.47238 * 60.00183 * 1 2 3 24 24 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47007 * 300.00182 * 1 2 3 26 26 H 1.09000 * 109.47198 * 59.99701 * 3 2 1 27 27 H 1.08998 * 109.47224 * 299.99860 * 3 2 1 28 28 H 1.09000 * 109.47046 * 305.00330 * 4 3 2 29 29 H 1.08997 * 109.47215 * 184.99797 * 4 3 2 30 30 H 0.97000 * 120.00592 * 180.02562 * 9 8 6 31 31 H 1.07998 * 123.03945 * 359.97438 * 17 16 14 32 32 H 1.09003 * 109.46580 * 329.69484 * 20 19 18 33 33 H 1.08996 * 109.47306 * 209.70095 * 20 19 18 34 34 H 1.00896 * 111.00213 * 180.02562 * 21 20 19 35 35 H 1.00904 * 111.00422 * 303.95672 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1781 -0.7888 -1.3102 7 1 3.7365 -1.3661 -2.1091 8 6 4.9512 -1.4194 -0.3423 9 7 5.6545 -0.7037 0.5060 10 14 4.9900 -3.2847 -0.2473 11 1 4.1185 -3.8526 -1.3071 12 1 6.3825 -3.7614 -0.4439 13 1 4.5003 -3.7228 1.0844 14 6 4.1841 1.3247 -2.3439 15 8 4.0511 2.5329 -2.2787 16 6 4.5700 0.6972 -3.6110 17 6 4.7058 1.3291 -4.8164 18 7 5.0670 0.5362 -5.7939 19 6 5.2374 -0.7155 -5.5148 20 6 5.6459 -1.7691 -6.5119 21 7 7.1113 -1.8610 -6.5546 22 16 4.9422 -1.0075 -3.8567 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8463 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0902 30 1 6.1942 -1.1438 1.1812 31 1 4.5343 2.3871 -4.9492 32 1 5.2698 -1.5002 -7.4991 33 1 5.2299 -2.7317 -6.2145 34 1 7.4106 -2.5609 -7.2168 35 1 7.5239 -0.9646 -6.7651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579021910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:36 Heat of formation + Delta-G solvation = -31.096098 kcal Electronic energy + Delta-G solvation = -20789.075984 eV Core-core repulsion = 17528.409639 eV Total energy + Delta-G solvation = -3260.666345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.12118 -38.34781 -36.97572 -34.85376 -34.46651 -31.88742 -30.23279 -28.77654 -26.41882 -25.90252 -24.88977 -23.15681 -22.14596 -20.10992 -18.87548 -17.74729 -16.78797 -16.13442 -15.70774 -15.69957 -15.21517 -14.76637 -14.63146 -14.41574 -14.31375 -13.73483 -13.56446 -13.20478 -12.72040 -12.48807 -12.09732 -11.96274 -11.73276 -11.32961 -11.23956 -11.15088 -11.06082 -10.50369 -10.40180 -10.24240 -9.51748 -9.09592 -8.89243 -8.70139 -8.53719 -8.45218 -8.07027 -7.50588 -6.59952 -4.40648 1.16590 2.26153 2.75351 3.06683 3.14415 3.18256 3.32724 3.93830 4.28386 4.41632 4.56787 4.66670 4.87720 4.92401 5.39984 5.59713 5.60781 5.66765 5.87319 5.93178 5.94006 5.99642 6.14528 6.18667 6.31827 6.61111 6.90584 7.04998 7.10377 7.17708 7.44912 7.70773 7.87011 8.08827 8.46476 8.81539 9.26129 9.70430 10.40876 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.007348 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.123580 B = 3809.544047 C = 4755.321575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.422 5.422 6 C -0.324 4.324 7 H 0.095 0.905 8 C 0.066 3.934 9 N -0.841 5.841 10 Si 0.909 3.091 11 H -0.258 1.258 12 H -0.273 1.273 13 H -0.274 1.274 14 C 0.544 3.456 15 O -0.596 6.596 16 C -0.248 4.248 17 C 0.065 3.935 18 N -0.488 5.488 19 C -0.066 4.066 20 C 0.148 3.852 21 N -0.843 5.843 22 S 0.294 5.706 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.277 0.723 31 H 0.171 0.829 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.342 0.658 35 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -4.180 -4.563 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.027 4.027 4 C 0.002 3.998 5 N -0.139 5.139 6 C -0.459 4.459 7 H 0.112 0.888 8 C -0.146 4.146 9 N -0.474 5.474 10 Si 0.733 3.267 11 H -0.182 1.182 12 H -0.199 1.199 13 H -0.199 1.199 14 C 0.333 3.667 15 O -0.484 6.484 16 C -0.374 4.374 17 C -0.094 4.094 18 N -0.204 5.204 19 C -0.337 4.337 20 C 0.015 3.985 21 N -0.375 5.375 22 S 0.557 5.443 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.188 0.812 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.984 -4.813 -3.587 6.704 hybrid contribution -0.427 0.696 -0.930 1.238 sum -3.412 -4.117 -4.517 6.999 Atomic orbital electron populations 1.22652 0.83202 1.01842 0.98934 1.88111 1.17579 1.27679 1.95080 1.23054 0.96238 0.84455 0.98996 1.21380 0.89312 0.99166 0.89915 1.43100 1.56182 1.06735 1.07930 1.19217 1.31165 0.82302 1.13195 0.88835 1.25558 0.92912 1.00559 0.95559 1.69847 1.23752 1.36871 1.16915 0.86116 0.78897 0.82255 0.79392 1.18160 1.19856 1.19894 1.17239 0.80390 0.85818 0.83221 1.90658 1.58508 1.13693 1.85496 1.26097 1.13909 0.97656 0.99709 1.22042 1.00631 1.00463 0.86290 1.66066 1.15673 1.03024 1.35640 1.28067 1.05870 0.95611 1.04156 1.20056 0.88622 0.95039 0.94815 1.58683 1.07095 1.12941 1.58735 1.85091 1.55566 1.05718 0.97921 0.94938 0.90316 0.95059 0.93906 0.93902 0.87809 0.90596 0.91305 0.81221 0.93736 0.89594 0.84481 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.40 10.37 -35.23 -0.37 -7.77 16 3 C 0.05 1.00 6.26 37.16 0.23 1.23 16 4 C 0.13 2.88 5.30 -4.04 -0.02 2.86 16 5 N -0.42 -10.45 2.39 -116.33 -0.28 -10.72 16 6 C -0.32 -7.86 6.54 -15.01 -0.10 -7.96 16 7 H 0.09 2.23 5.44 -33.50 -0.18 2.05 16 8 C 0.07 1.57 5.09 -17.46 -0.09 1.48 16 9 N -0.84 -21.07 11.78 55.50 0.65 -20.42 16 10 Si 0.91 18.59 29.57 -169.99 -5.03 13.57 16 11 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 C 0.54 13.76 7.58 -12.90 -0.10 13.66 16 15 O -0.60 -15.97 16.51 5.17 0.09 -15.88 16 16 C -0.25 -5.69 6.35 -36.76 -0.23 -5.92 16 17 C 0.07 1.39 11.17 -18.46 -0.21 1.18 16 18 N -0.49 -9.76 10.50 -11.25 -0.12 -9.88 16 19 C -0.07 -1.20 6.89 -13.31 -0.09 -1.29 16 20 C 0.15 2.09 7.36 -4.98 -0.04 2.05 16 21 N -0.84 -10.83 9.61 -11.41 -0.11 -10.94 16 22 S 0.29 5.94 18.55 -107.50 -1.99 3.95 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 29 H 0.08 1.75 7.51 -51.93 -0.39 1.36 16 30 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.17 3.43 8.06 -52.49 -0.42 3.01 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.34 3.27 9.08 -39.29 -0.36 2.92 16 35 H 0.35 4.51 8.99 -39.29 -0.35 4.16 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -29.39 314.66 -6.06 -35.45 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.12 Total: 9.05 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 0.47 Total: 8.86 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.15 Total: -51.97 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.28 Total: -23.65 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.99 Total: 3.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.39 -6.06 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579021910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.349 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds