Wall clock time and date at job start Fri Apr 10 2020 15:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00269 * 2 1 4 4 C 1.53005 * 109.47358 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46877 * 65.00139 * 4 3 2 6 6 C 1.36888 * 119.99660 * 265.92223 * 5 4 3 7 7 H 1.08005 * 120.00222 * 130.31426 * 6 5 4 8 8 C 1.39003 * 119.99915 * 310.30505 * 6 5 4 9 9 N 1.31392 * 120.00621 * 349.54588 * 8 6 5 10 10 Si 1.86808 * 119.99806 * 169.53917 * 8 6 5 11 11 H 1.48502 * 109.47103 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47136 * 120.00497 * 10 8 6 13 13 H 1.48501 * 109.47119 * 240.00173 * 10 8 6 14 14 C 1.34780 * 119.99928 * 85.91817 * 5 4 3 15 15 O 1.21719 * 120.00220 * 2.61379 * 14 5 4 16 16 C 1.46563 * 119.99515 * 182.61186 * 14 5 4 17 17 C 1.36777 * 126.17424 * 174.33911 * 16 14 5 18 18 N 1.30943 * 113.92215 * 179.75250 * 17 16 14 19 19 C 1.29377 * 117.46205 * 0.51473 * 18 17 16 20 20 C 1.50707 * 124.70319 * 179.76733 * 19 18 17 21 21 N 1.46893 * 109.47194 * 89.69598 * 20 19 18 22 22 S 1.70927 * 110.59692 * 359.49928 * 19 18 17 23 23 H 1.09004 * 109.47238 * 60.00183 * 1 2 3 24 24 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47007 * 300.00182 * 1 2 3 26 26 H 1.09000 * 109.47198 * 59.99701 * 3 2 1 27 27 H 1.08998 * 109.47224 * 299.99860 * 3 2 1 28 28 H 1.09000 * 109.47046 * 305.00330 * 4 3 2 29 29 H 1.08997 * 109.47215 * 184.99797 * 4 3 2 30 30 H 0.97000 * 120.00592 * 180.02562 * 9 8 6 31 31 H 1.07998 * 123.03945 * 359.97438 * 17 16 14 32 32 H 1.09003 * 109.46580 * 329.69484 * 20 19 18 33 33 H 1.08996 * 109.47306 * 209.70095 * 20 19 18 34 34 H 1.00896 * 111.00213 * 180.02562 * 21 20 19 35 35 H 1.00904 * 111.00422 * 303.95672 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1781 -0.7888 -1.3102 7 1 3.7365 -1.3661 -2.1091 8 6 4.9512 -1.4194 -0.3423 9 7 5.6545 -0.7037 0.5060 10 14 4.9900 -3.2847 -0.2473 11 1 4.1185 -3.8526 -1.3071 12 1 6.3825 -3.7614 -0.4439 13 1 4.5003 -3.7228 1.0844 14 6 4.1841 1.3247 -2.3439 15 8 4.0511 2.5329 -2.2787 16 6 4.5700 0.6972 -3.6110 17 6 4.7058 1.3291 -4.8164 18 7 5.0670 0.5362 -5.7939 19 6 5.2374 -0.7155 -5.5148 20 6 5.6459 -1.7691 -6.5119 21 7 7.1113 -1.8610 -6.5546 22 16 4.9422 -1.0075 -3.8567 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8463 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0902 30 1 6.1942 -1.1438 1.1812 31 1 4.5343 2.3871 -4.9492 32 1 5.2698 -1.5002 -7.4991 33 1 5.2299 -2.7317 -6.2145 34 1 7.4106 -2.5609 -7.2168 35 1 7.5239 -0.9646 -6.7651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579021910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:35 Heat of formation + Delta-G solvation = -53.767278 kcal Electronic energy + Delta-G solvation = -20790.059080 eV Core-core repulsion = 17528.409639 eV Total energy + Delta-G solvation = -3261.649441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87136 -40.03337 -38.52618 -36.69365 -35.64698 -33.71846 -31.88995 -30.34368 -27.87065 -27.36618 -26.56849 -24.67572 -23.73258 -21.86903 -20.63266 -19.31837 -18.50403 -17.68844 -17.35579 -17.03905 -16.69619 -16.45651 -16.11751 -15.94808 -15.87475 -15.26713 -15.13443 -14.71270 -14.27182 -14.06798 -13.61523 -13.50013 -13.14671 -13.02057 -12.93075 -12.74228 -12.58727 -12.14102 -12.00391 -11.85958 -11.30676 -10.69187 -10.52614 -10.33484 -10.14286 -9.76310 -9.67234 -9.29785 -8.40458 -6.28311 -0.47107 0.63196 1.13602 1.44808 1.48478 1.60711 1.67502 2.24339 2.46666 2.79718 2.94918 3.11488 3.28039 3.83410 4.12827 4.19043 4.23614 4.41895 4.47106 4.49777 4.56180 4.59052 4.64213 4.67636 4.78962 4.86719 5.22303 5.30476 5.33743 5.93919 6.07844 6.24970 6.37827 6.57994 6.84738 6.97263 7.38723 7.84037 8.62190 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.007348 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.123580 B = 3809.544047 C = 4755.321575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.063 3.937 4 C 0.124 3.876 5 N -0.428 5.428 6 C -0.337 4.337 7 H 0.098 0.902 8 C 0.031 3.969 9 N -0.876 5.876 10 Si 0.960 3.040 11 H -0.244 1.244 12 H -0.269 1.269 13 H -0.273 1.273 14 C 0.530 3.470 15 O -0.627 6.627 16 C -0.290 4.290 17 C 0.074 3.926 18 N -0.497 5.497 19 C -0.038 4.038 20 C 0.146 3.854 21 N -0.849 5.849 22 S 0.299 5.701 23 H 0.036 0.964 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.279 0.721 31 H 0.174 0.826 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.364 0.636 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -6.247 -5.887 9.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.015 4.015 4 C 0.000 4.000 5 N -0.144 5.144 6 C -0.470 4.470 7 H 0.115 0.885 8 C -0.177 4.177 9 N -0.510 5.510 10 Si 0.781 3.219 11 H -0.166 1.166 12 H -0.194 1.194 13 H -0.198 1.198 14 C 0.320 3.680 15 O -0.517 6.517 16 C -0.415 4.415 17 C -0.086 4.086 18 N -0.213 5.213 19 C -0.311 4.311 20 C 0.013 3.987 21 N -0.383 5.383 22 S 0.562 5.438 23 H 0.055 0.945 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.191 0.809 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.180 0.820 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.343 -6.907 -4.893 9.100 hybrid contribution -0.316 1.327 -0.657 1.514 sum -3.659 -5.579 -5.549 8.678 Atomic orbital electron populations 1.22895 0.80509 1.03497 1.00213 1.88045 1.20545 1.27587 1.95329 1.22823 0.94058 0.84828 0.99766 1.21363 0.91637 0.97928 0.89050 1.43304 1.55822 1.07155 1.08141 1.19418 1.31615 0.82070 1.13909 0.88493 1.26275 0.92266 1.04269 0.94924 1.69934 1.24763 1.38523 1.17743 0.85348 0.79232 0.77570 0.79713 1.16628 1.19413 1.19784 1.17624 0.80367 0.85719 0.84291 1.90604 1.60058 1.14823 1.86248 1.25984 1.16659 0.99608 0.99288 1.22216 0.99363 1.00946 0.86112 1.66184 1.16668 1.03531 1.34877 1.28731 1.02641 0.95841 1.03862 1.20259 0.89713 0.94412 0.94334 1.58632 1.06063 1.13635 1.59929 1.84815 1.55845 1.04025 0.99099 0.94511 0.88541 0.92843 0.90908 0.95133 0.89186 0.91929 0.91083 0.80896 0.91878 0.87439 0.82042 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.40 -15.83 10.37 -148.98 -1.54 -17.37 16 3 C 0.06 2.51 6.26 71.98 0.45 2.97 16 4 C 0.12 5.86 5.30 86.38 0.46 6.31 16 5 N -0.43 -21.75 2.39 -640.17 -1.53 -23.28 16 6 C -0.34 -16.47 6.54 84.09 0.55 -15.92 16 7 H 0.10 4.60 5.44 -14.98 -0.08 4.52 16 8 C 0.03 1.47 5.09 84.94 0.43 1.90 16 9 N -0.88 -44.68 11.78 21.67 0.26 -44.42 16 10 Si 0.96 37.22 29.57 68.60 2.03 39.25 16 11 H -0.24 -8.77 7.11 99.48 0.71 -8.07 16 12 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 13 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 14 C 0.53 27.64 7.58 86.41 0.66 28.30 16 15 O -0.63 -34.96 16.51 -4.41 -0.07 -35.03 16 16 C -0.29 -13.44 6.35 24.10 0.15 -13.29 16 17 C 0.07 3.13 11.17 84.48 0.94 4.08 16 18 N -0.50 -19.05 10.50 -189.50 -1.99 -21.04 16 19 C -0.04 -1.31 6.89 88.47 0.61 -0.71 16 20 C 0.15 3.57 7.36 85.56 0.63 4.20 16 21 N -0.85 -18.86 9.61 -190.01 -1.83 -20.69 16 22 S 0.30 11.75 18.55 -56.49 -1.05 10.70 16 23 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 4.48 6.14 -2.39 -0.01 4.47 16 29 H 0.06 3.04 7.51 -2.39 -0.02 3.02 16 30 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 31 H 0.17 7.07 8.06 -2.91 -0.02 7.05 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.36 5.55 9.08 -89.70 -0.81 4.74 16 35 H 0.35 7.98 8.99 -89.69 -0.81 7.17 16 Total: -1.00 -63.92 314.66 -0.14 -64.06 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.54 Total: 28.03 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.13 Total: 19.80 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -5.09 Total: -109.44 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -1.62 Total: -52.40 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 11.75 SS G_CDS: -1.05 Total: 10.70 kcal Total: -63.92 -0.14 -64.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579021910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.290 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds