Wall clock time and date at job start Fri Apr 10 2020 15:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47136 * 299.99886 * 3 2 1 6 6 H 1.48494 * 109.47292 * 59.99851 * 3 2 1 7 7 C 1.37874 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99896 * 173.82433 * 7 2 1 9 9 C 1.50698 * 120.00173 * 353.81679 * 7 2 1 10 10 C 1.53001 * 115.54782 * 84.91185 * 9 7 2 11 11 S 1.80993 * 109.47379 * 39.92733 * 10 9 7 12 12 C 1.76201 * 100.00409 * 180.02562 * 11 10 9 13 13 N 1.32047 * 120.14801 * 359.97438 * 12 11 10 14 14 C 1.32629 * 122.63029 * 180.02562 * 13 12 11 15 15 C 1.36079 * 121.99651 * 359.95920 * 14 13 12 16 16 C 1.40869 * 118.87792 * 0.02562 * 15 14 13 17 17 C 1.40166 * 122.17402 * 179.97438 * 16 15 14 18 18 C 1.36296 * 119.47930 * 180.02562 * 17 16 15 19 19 C 1.39270 * 120.96757 * 359.97438 * 18 17 16 20 20 C 1.36320 * 121.03669 * 0.02562 * 19 18 17 21 21 C 1.40051 * 119.54181 * 359.97438 * 20 19 18 22 22 C 1.53001 * 117.52164 * 230.61164 * 9 7 2 23 23 C 1.52995 * 60.00001 * 107.48054 * 22 9 7 24 24 H 0.96998 * 120.00402 * 354.97330 * 1 2 3 25 25 H 1.08997 * 109.46929 * 279.92481 * 10 9 7 26 26 H 1.09001 * 109.47367 * 159.92828 * 10 9 7 27 27 H 1.07995 * 119.00067 * 179.97438 * 14 13 12 28 28 H 1.08003 * 120.56071 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.26396 * 0.03182 * 17 16 15 30 30 H 1.08005 * 119.51894 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.47964 * 180.27759 * 19 18 17 32 32 H 1.08006 * 120.23102 * 179.97438 * 20 19 18 33 33 H 1.09003 * 117.50135 * 214.97335 * 22 9 7 34 34 H 1.09004 * 117.49817 * 359.97438 * 22 9 7 35 35 H 1.09001 * 117.50570 * 252.51034 * 23 22 9 36 36 H 1.09001 * 117.51924 * 107.47948 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1967 -0.1012 9 6 1.2576 -2.4954 0.1394 10 6 0.6966 -3.0772 -1.1596 11 16 1.8978 -2.8443 -2.4933 12 6 1.0185 -3.5831 -3.8297 13 7 -0.1822 -4.0954 -3.6309 14 6 -0.8869 -4.6632 -4.6004 15 6 -0.4170 -4.7559 -5.8741 16 6 0.8573 -4.2326 -6.1689 17 6 1.4087 -4.2912 -7.4562 18 6 2.6470 -3.7677 -7.6799 19 6 3.3717 -3.1754 -6.6485 20 6 2.8646 -3.1020 -5.3853 21 6 1.5948 -3.6296 -5.1192 22 6 1.7485 -3.4816 1.2012 23 6 0.4455 -2.7098 1.4183 24 1 -0.4851 0.8368 0.0736 25 1 -0.2326 -2.5677 -1.4144 26 1 0.5027 -4.1417 -1.0271 27 1 -1.8635 -5.0639 -4.3721 28 1 -1.0108 -5.2229 -6.6459 29 1 0.8566 -4.7475 -8.2645 30 1 3.0727 -3.8129 -8.6715 31 1 4.3490 -2.7642 -6.8537 32 1 3.4380 -2.6401 -4.5951 33 1 1.6719 -4.5450 0.9742 34 1 2.6123 -3.1895 1.7984 35 1 0.4516 -1.9098 2.1585 36 1 -0.4887 -3.2650 1.3340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401674563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:47 Heat of formation + Delta-G solvation = 69.742153 kcal Electronic energy + Delta-G solvation = -19119.003519 eV Core-core repulsion = 16273.559112 eV Total energy + Delta-G solvation = -2845.444407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42556 -37.09931 -36.59723 -32.77806 -31.99514 -31.01485 -29.49351 -27.61391 -25.40314 -24.12665 -23.30865 -22.18530 -21.13997 -19.31474 -18.00966 -17.35142 -16.56599 -16.08262 -15.34324 -14.66628 -14.61837 -14.21993 -14.17480 -13.67111 -13.53405 -13.37654 -12.91477 -12.62007 -12.20236 -11.89057 -11.67854 -11.50918 -11.12055 -11.00315 -10.89782 -10.51723 -10.27875 -10.15260 -9.86732 -9.59401 -9.13585 -8.98035 -8.83619 -8.50097 -8.31453 -8.05844 -6.75108 -6.09354 -4.16356 0.51521 1.08879 2.04884 2.22915 3.20082 3.20825 3.27702 3.36286 3.39537 4.24254 4.37982 4.69783 4.78830 4.92897 5.04834 5.20419 5.20933 5.27008 5.29131 5.41861 5.51484 5.88161 5.94811 6.02180 6.08991 6.20624 6.21636 6.47331 6.49196 6.51971 6.52858 6.72228 6.76645 6.88180 6.96570 7.06407 7.32958 7.44966 7.82213 8.18542 8.31660 8.85220 9.50374 10.99068 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.005197 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.020856 B = 5386.273176 C = 6106.971575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.495 4.495 8 H 0.065 0.935 9 C 0.046 3.954 10 C -0.047 4.047 11 S 0.007 5.993 12 C 0.150 3.850 13 N -0.505 5.505 14 C 0.106 3.894 15 C -0.198 4.198 16 C -0.006 4.006 17 C -0.124 4.124 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.070 4.070 21 C -0.101 4.101 22 C -0.208 4.208 23 C -0.147 4.147 24 H 0.261 0.739 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -7.995 -12.237 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.126 4.126 3 Si 0.713 3.287 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.044 3.956 10 C -0.195 4.195 11 S 0.256 5.744 12 C -0.110 4.110 13 N -0.220 5.220 14 C -0.042 4.042 15 C -0.223 4.223 16 C -0.012 4.012 17 C -0.143 4.143 18 C -0.115 4.115 19 C -0.154 4.154 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.245 4.245 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.777 -7.315 -11.333 13.772 hybrid contribution -0.802 0.283 -0.876 1.221 sum 1.976 -7.032 -12.210 14.228 Atomic orbital electron populations 1.70021 1.05949 1.26920 1.47705 1.24936 0.94717 0.98908 0.94007 0.86624 0.80477 0.83885 0.77681 1.19474 1.20853 1.20940 1.20394 0.92934 0.88530 1.51507 0.91734 1.18597 0.98341 0.94051 0.84606 1.23253 0.99461 1.01346 0.95463 1.85977 1.23705 1.65935 0.98831 1.24653 0.94141 0.94926 0.97288 1.68072 1.06330 1.12648 1.34940 1.22138 0.98709 0.94388 0.88955 1.21602 0.96370 1.05802 0.98514 1.18067 0.94082 0.95811 0.93265 1.20869 0.96305 1.01705 0.95414 1.20928 0.94572 0.96969 0.99067 1.20848 1.00540 1.01135 0.92887 1.21079 0.93833 0.96541 0.97538 1.18559 0.96325 1.02665 0.93205 1.23088 0.98600 0.95637 1.07155 1.22537 0.92340 1.01164 1.02646 0.92930 0.88917 0.91975 0.83456 0.85163 0.85535 0.85958 0.85706 0.84511 0.91532 0.90177 0.89804 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.13 12.93 55.43 0.72 -23.41 16 2 C 0.08 2.11 5.39 -17.82 -0.10 2.01 16 3 Si 0.89 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -12.92 7.54 -34.44 -0.26 -13.18 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.05 1.10 1.64 -155.66 -0.26 0.85 16 10 C -0.05 -1.06 4.96 37.16 0.18 -0.88 16 11 S 0.01 0.15 19.43 -107.50 -2.09 -1.94 16 12 C 0.15 2.92 7.05 -16.29 -0.11 2.80 16 13 N -0.50 -9.74 9.13 -11.98 -0.11 -9.85 16 14 C 0.11 1.67 11.06 -17.98 -0.20 1.47 16 15 C -0.20 -2.75 9.87 -39.36 -0.39 -3.14 16 16 C -0.01 -0.09 5.74 -106.83 -0.61 -0.70 16 17 C -0.12 -1.50 9.81 -39.56 -0.39 -1.88 16 18 C -0.10 -1.06 9.95 -39.90 -0.40 -1.46 16 19 C -0.14 -1.65 9.95 -39.89 -0.40 -2.05 16 20 C -0.07 -1.06 9.42 -39.59 -0.37 -1.43 16 21 C -0.10 -1.73 5.75 -106.70 -0.61 -2.34 16 22 C -0.21 -4.44 9.88 -26.73 -0.26 -4.70 16 23 C -0.15 -3.38 9.47 -26.73 -0.25 -3.64 16 24 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 25 H 0.09 2.34 8.13 -51.92 -0.42 1.92 16 26 H 0.06 1.34 7.94 -51.92 -0.41 0.93 16 27 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 2.04 6.95 -52.48 -0.36 1.68 16 33 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 321.79 15.07 4.85 4.85 Total: -1.00 -28.98 321.79 -10.63 -39.61 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.55 Total: 3.31 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -4.43 Total: -28.28 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.61 Total: -33.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.09 Total: -1.94 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.98 -10.63 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401674563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.353 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds