Wall clock time and date at job start Fri Apr 10 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48498 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47136 * 299.99886 * 3 2 1 6 6 H 1.48494 * 109.47292 * 59.99851 * 3 2 1 7 7 C 1.37874 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99896 * 173.82433 * 7 2 1 9 9 C 1.50698 * 120.00173 * 353.81679 * 7 2 1 10 10 C 1.53001 * 115.54782 * 84.91185 * 9 7 2 11 11 S 1.80993 * 109.47379 * 39.92733 * 10 9 7 12 12 C 1.76201 * 100.00409 * 180.02562 * 11 10 9 13 13 N 1.32047 * 120.14801 * 359.97438 * 12 11 10 14 14 C 1.32629 * 122.63029 * 180.02562 * 13 12 11 15 15 C 1.36079 * 121.99651 * 359.95920 * 14 13 12 16 16 C 1.40869 * 118.87792 * 0.02562 * 15 14 13 17 17 C 1.40166 * 122.17402 * 179.97438 * 16 15 14 18 18 C 1.36296 * 119.47930 * 180.02562 * 17 16 15 19 19 C 1.39270 * 120.96757 * 359.97438 * 18 17 16 20 20 C 1.36320 * 121.03669 * 0.02562 * 19 18 17 21 21 C 1.40051 * 119.54181 * 359.97438 * 20 19 18 22 22 C 1.53001 * 117.52164 * 230.61164 * 9 7 2 23 23 C 1.52995 * 60.00001 * 107.48054 * 22 9 7 24 24 H 0.96998 * 120.00402 * 354.97330 * 1 2 3 25 25 H 1.08997 * 109.46929 * 279.92481 * 10 9 7 26 26 H 1.09001 * 109.47367 * 159.92828 * 10 9 7 27 27 H 1.07995 * 119.00067 * 179.97438 * 14 13 12 28 28 H 1.08003 * 120.56071 * 180.02562 * 15 14 13 29 29 H 1.08001 * 120.26396 * 0.03182 * 17 16 15 30 30 H 1.08005 * 119.51894 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.47964 * 180.27759 * 19 18 17 32 32 H 1.08006 * 120.23102 * 179.97438 * 20 19 18 33 33 H 1.09003 * 117.50135 * 214.97335 * 22 9 7 34 34 H 1.09004 * 117.49817 * 359.97438 * 22 9 7 35 35 H 1.09001 * 117.50570 * 252.51034 * 23 22 9 36 36 H 1.09001 * 117.51924 * 107.47948 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1967 -0.1012 9 6 1.2576 -2.4954 0.1394 10 6 0.6966 -3.0772 -1.1596 11 16 1.8978 -2.8443 -2.4933 12 6 1.0185 -3.5831 -3.8297 13 7 -0.1822 -4.0954 -3.6309 14 6 -0.8869 -4.6632 -4.6004 15 6 -0.4170 -4.7559 -5.8741 16 6 0.8573 -4.2326 -6.1689 17 6 1.4087 -4.2912 -7.4562 18 6 2.6470 -3.7677 -7.6799 19 6 3.3717 -3.1754 -6.6485 20 6 2.8646 -3.1020 -5.3853 21 6 1.5948 -3.6296 -5.1192 22 6 1.7485 -3.4816 1.2012 23 6 0.4455 -2.7098 1.4183 24 1 -0.4851 0.8368 0.0736 25 1 -0.2326 -2.5677 -1.4144 26 1 0.5027 -4.1417 -1.0271 27 1 -1.8635 -5.0639 -4.3721 28 1 -1.0108 -5.2229 -6.6459 29 1 0.8566 -4.7475 -8.2645 30 1 3.0727 -3.8129 -8.6715 31 1 4.3490 -2.7642 -6.8537 32 1 3.4380 -2.6401 -4.5951 33 1 1.6719 -4.5450 0.9742 34 1 2.6123 -3.1895 1.7984 35 1 0.4516 -1.9098 2.1585 36 1 -0.4887 -3.2650 1.3340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401674563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:46 Heat of formation + Delta-G solvation = 55.918839 kcal Electronic energy + Delta-G solvation = -19119.602943 eV Core-core repulsion = 16273.559112 eV Total energy + Delta-G solvation = -2846.043831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56945 -38.47401 -38.19153 -34.02502 -33.90069 -32.12520 -30.63358 -29.37507 -27.40955 -25.30914 -24.42790 -23.29920 -22.94745 -21.16743 -19.20651 -18.59030 -17.99705 -17.61500 -16.71549 -16.54121 -15.72649 -15.68461 -15.51400 -15.28301 -14.96913 -14.59511 -14.40716 -13.99303 -13.74853 -13.25670 -13.10936 -12.98606 -12.81983 -12.63318 -12.36526 -12.22164 -12.01906 -11.59945 -11.40719 -11.29194 -10.73649 -10.48895 -10.42511 -10.08648 -9.92883 -9.46676 -8.23972 -8.11171 -6.23161 -0.62377 -0.01813 0.74949 0.93451 1.39352 1.43090 1.52990 1.57984 2.11707 2.43076 3.09570 3.18442 3.43771 3.62482 3.72212 3.88018 4.01142 4.12084 4.22634 4.33798 4.38758 4.44580 4.52129 4.66129 4.68467 4.82300 4.89537 4.96688 5.00506 5.06630 5.18106 5.21098 5.48324 5.49089 5.51690 5.60115 5.68375 5.76001 5.97348 6.33772 6.81658 6.92066 7.45497 8.96629 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.005197 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.020856 B = 5386.273176 C = 6106.971575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.035 3.965 3 Si 0.941 3.059 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.497 4.497 8 H 0.056 0.944 9 C 0.017 3.983 10 C -0.027 4.027 11 S -0.024 6.024 12 C 0.122 3.878 13 N -0.531 5.531 14 C 0.070 3.930 15 C -0.165 4.165 16 C -0.032 4.032 17 C -0.115 4.115 18 C -0.093 4.093 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.182 4.182 23 C -0.151 4.151 24 H 0.259 0.741 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.172 0.828 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -9.182 -15.637 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.176 4.176 11 S 0.221 5.779 12 C -0.138 4.138 13 N -0.246 5.246 14 C -0.077 4.077 15 C -0.189 4.189 16 C -0.039 4.039 17 C -0.133 4.133 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.219 4.219 23 C -0.191 4.191 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.557 -8.516 -14.736 17.388 hybrid contribution -1.041 0.518 -0.119 1.169 sum 2.516 -7.998 -14.855 17.058 Atomic orbital electron populations 1.70131 1.07139 1.27338 1.49364 1.25574 0.95347 1.01688 0.94030 0.85761 0.79641 0.80458 0.77461 1.18782 1.21112 1.20483 1.20546 0.92615 0.89687 1.50737 0.92573 1.18734 0.99531 0.94597 0.85623 1.22859 0.98308 1.00617 0.95811 1.85726 1.23979 1.68608 0.99540 1.24348 0.94853 0.97275 0.97368 1.67908 1.06668 1.12889 1.37160 1.22599 0.99812 0.95795 0.89537 1.22115 0.95765 1.02536 0.98514 1.18500 0.94692 0.96445 0.94243 1.21334 0.96724 1.00530 0.94673 1.21441 0.94039 0.95209 1.00472 1.21298 1.01461 0.98889 0.91756 1.21118 0.93839 0.98798 0.98984 1.18772 0.97390 1.03325 0.92758 1.23087 0.97600 0.96298 1.04889 1.22446 0.93539 1.01277 1.01815 0.93169 0.92618 0.91702 0.81079 0.80766 0.81692 0.81644 0.82828 0.85772 0.89296 0.89675 0.91586 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.07 12.93 21.45 0.28 -51.79 16 2 C 0.03 1.92 5.39 84.65 0.46 2.37 16 3 Si 0.94 43.63 29.55 68.60 2.03 45.65 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.50 -26.85 7.54 25.60 0.19 -26.66 16 8 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 9 C 0.02 0.84 1.64 -52.93 -0.09 0.75 16 10 C -0.03 -1.30 4.96 71.98 0.36 -0.94 16 11 S -0.02 -1.08 19.43 -56.49 -1.10 -2.18 16 12 C 0.12 4.93 7.05 85.42 0.60 5.53 16 13 N -0.53 -21.19 9.13 -191.82 -1.75 -22.94 16 14 C 0.07 2.14 11.06 84.07 0.93 3.06 16 15 C -0.17 -4.13 9.87 22.41 0.22 -3.91 16 16 C -0.03 -0.89 5.74 -21.30 -0.12 -1.01 16 17 C -0.11 -2.19 9.81 22.29 0.22 -1.97 16 18 C -0.09 -1.58 9.95 22.07 0.22 -1.36 16 19 C -0.12 -2.47 9.95 22.07 0.22 -2.25 16 20 C -0.11 -3.21 9.42 22.26 0.21 -3.00 16 21 C -0.12 -3.95 5.75 -21.21 -0.12 -4.07 16 22 C -0.18 -7.81 9.88 30.59 0.30 -7.51 16 23 C -0.15 -7.16 9.47 30.59 0.29 -6.87 16 24 H 0.26 14.34 8.32 -92.71 -0.77 13.57 16 25 H 0.06 3.02 8.13 -2.40 -0.02 3.00 16 26 H 0.06 2.95 7.94 -2.39 -0.02 2.93 16 27 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.12 3.90 6.95 -2.91 -0.02 3.88 16 33 H 0.09 3.40 8.08 -2.39 -0.02 3.39 16 34 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 35 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -66.79 321.79 4.42 -62.37 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.07 Total: 16.72 kcal Atomic # 6 Polarization: -51.73 SS G_CDS: 3.89 Total: -47.84 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -1.47 Total: -74.73 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -1.10 Total: -2.18 kcal Total: -66.79 4.42 -62.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401674563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.288 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds