Wall clock time and date at job start Fri Apr 10 2020 15:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00235 * 2 1 4 4 H 1.48491 * 109.47149 * 240.00204 * 3 2 1 5 5 H 1.48508 * 109.46808 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47435 * 119.99513 * 3 2 1 7 7 C 1.37879 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00556 * 173.81456 * 7 2 1 9 9 C 1.50703 * 119.99824 * 353.82037 * 7 2 1 10 10 C 1.52995 * 115.55166 * 84.90222 * 9 7 2 11 11 S 1.81007 * 109.47040 * 39.92724 * 10 9 7 12 12 C 1.76203 * 99.99898 * 179.97438 * 11 10 9 13 13 C 1.38732 * 121.06393 * 359.97438 * 12 11 10 14 14 C 1.38728 * 119.68397 * 179.97438 * 13 12 11 15 15 N 1.31327 * 121.87383 * 0.02562 * 14 13 12 16 16 C 1.33801 * 121.68858 * 359.97438 * 15 14 13 17 17 C 1.40556 * 120.98567 * 179.97438 * 16 15 14 18 18 C 1.36139 * 119.75521 * 180.02562 * 17 16 15 19 19 C 1.39267 * 121.02966 * 0.03009 * 18 17 16 20 20 C 1.36274 * 120.81315 * 359.97197 * 19 18 17 21 21 C 1.40135 * 119.63230 * 359.74265 * 20 19 18 22 22 C 1.53000 * 117.51899 * 230.60552 * 9 7 2 23 23 C 1.53003 * 117.49870 * 299.23717 * 9 7 2 24 24 H 0.97000 * 119.99830 * 354.94940 * 1 2 3 25 25 H 1.09005 * 109.47261 * 159.92169 * 10 9 7 26 26 H 1.08999 * 109.47616 * 279.92457 * 10 9 7 27 27 H 1.07997 * 120.16069 * 359.96174 * 13 12 11 28 28 H 1.08004 * 119.06453 * 180.02562 * 14 13 12 29 29 H 1.08004 * 120.12219 * 359.97438 * 17 16 15 30 30 H 1.07999 * 119.48563 * 179.97438 * 18 17 16 31 31 H 1.07992 * 119.58992 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.18487 * 180.02562 * 20 19 18 33 33 H 1.08996 * 117.50096 * 214.96915 * 22 9 7 34 34 H 1.09005 * 117.49599 * 359.97438 * 22 9 7 35 35 H 1.09004 * 117.49924 * 359.97194 * 23 9 7 36 36 H 1.08997 * 117.50074 * 144.97228 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1969 -0.1002 9 6 1.2577 -2.4953 0.1416 10 6 0.6965 -3.0782 -1.1569 11 16 1.8977 -2.8463 -2.4910 12 6 1.0189 -3.5877 -3.8262 13 6 -0.2432 -4.1321 -3.6379 14 6 -0.9097 -4.7083 -4.7095 15 7 -0.3803 -4.7570 -5.9104 16 6 0.8324 -4.2521 -6.1649 17 6 1.3852 -4.3128 -7.4557 18 6 2.6215 -3.7916 -7.6865 19 6 3.3526 -3.1967 -6.6613 20 6 2.8481 -3.1202 -5.3977 21 6 1.5759 -3.6415 -5.1269 22 6 1.7487 -3.4807 1.2041 23 6 0.4455 -2.7086 1.4206 24 1 -0.4850 0.8368 0.0740 25 1 0.5028 -4.1426 -1.0235 26 1 -0.2328 -2.5690 -1.4121 27 1 -0.7046 -4.1076 -2.6618 28 1 -1.8920 -5.1287 -4.5518 29 1 0.8315 -4.7720 -8.2614 30 1 3.0422 -3.8409 -8.6800 31 1 4.3314 -2.7910 -6.8703 32 1 3.4237 -2.6563 -4.6104 33 1 1.6719 -4.5442 0.9781 34 1 2.6125 -3.1880 1.8011 35 1 0.4518 -1.9080 2.1603 36 1 -0.4887 -3.2639 1.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594892349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:37 Heat of formation + Delta-G solvation = 72.604017 kcal Electronic energy + Delta-G solvation = -19124.480204 eV Core-core repulsion = 16279.159897 eV Total energy + Delta-G solvation = -2845.320308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39904 -36.90493 -36.69560 -33.21180 -32.08737 -30.48521 -29.89529 -27.79937 -25.51764 -24.20132 -23.24679 -22.03739 -21.26387 -19.44912 -18.18971 -17.20704 -16.84550 -16.10375 -15.13509 -14.75203 -14.55208 -14.23597 -14.11388 -13.82079 -13.73796 -13.37628 -13.03983 -12.82497 -12.23898 -11.62891 -11.59407 -11.49427 -11.23335 -11.11031 -10.98491 -10.68241 -10.60695 -10.31553 -10.03917 -9.74301 -9.11623 -8.96863 -8.62958 -8.58525 -8.40896 -8.19808 -6.85598 -6.18804 -4.25751 0.53410 1.03243 2.10107 2.14166 3.08998 3.09736 3.25199 3.29968 3.32790 4.30044 4.31184 4.49298 4.87363 4.91802 5.00906 5.10064 5.14694 5.31031 5.35197 5.45853 5.67044 5.74170 5.82020 5.96807 6.04284 6.14715 6.21374 6.24576 6.32210 6.45201 6.56465 6.57753 6.63832 6.69400 6.91225 7.02022 7.16406 7.33542 7.73594 8.16789 8.20084 8.75550 9.41661 10.89752 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.005157 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.799961 B = 5427.964340 C = 6145.324446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.064 0.936 9 C 0.049 3.951 10 C -0.069 4.069 11 S -0.007 6.007 12 C -0.039 4.039 13 C -0.213 4.213 14 C 0.154 3.846 15 N -0.505 5.505 16 C 0.143 3.857 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.132 4.132 20 C -0.079 4.079 21 C -0.094 4.094 22 C -0.206 4.206 23 C -0.147 4.147 24 H 0.263 0.737 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -7.288 -9.062 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.048 3.952 10 C -0.217 4.217 11 S 0.246 5.754 12 C -0.161 4.161 13 C -0.244 4.244 14 C -0.018 4.018 15 N -0.217 5.217 16 C 0.020 3.980 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.151 4.151 20 C -0.099 4.099 21 C -0.101 4.101 22 C -0.243 4.243 23 C -0.187 4.187 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.156 0.844 28 H 0.172 0.828 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.644 -6.938 -9.726 12.236 hybrid contribution -0.644 0.755 0.833 1.296 sum 2.000 -6.183 -8.893 11.014 Atomic orbital electron populations 1.69976 1.05971 1.27318 1.47534 1.24923 0.94749 0.98966 0.93843 0.86718 0.79858 0.83018 0.78949 1.19785 1.21182 1.20119 1.20300 0.92924 0.88435 1.51821 0.91785 1.18472 0.98448 0.94175 0.84141 1.23545 0.99945 1.00880 0.97321 1.86066 1.24301 1.66486 0.98533 1.23403 0.97734 0.96345 0.98666 1.22092 0.95792 1.04840 1.01693 1.22660 0.98624 0.92935 0.87543 1.68059 1.11132 1.19825 1.22652 1.18810 0.90581 0.95145 0.93419 1.20709 0.95739 1.01027 0.94940 1.20847 0.94392 0.97421 0.99232 1.20833 1.00457 1.00917 0.92860 1.21041 0.93921 0.97356 0.97537 1.18421 0.96383 1.02626 0.92642 1.23099 0.98699 0.95570 1.06977 1.22567 0.92307 1.01210 1.02602 0.92716 0.92074 0.89027 0.84361 0.82799 0.85116 0.85673 0.85692 0.84876 0.91481 0.90037 0.89663 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.27 12.93 55.43 0.72 -22.55 16 2 C 0.08 2.07 5.39 -17.82 -0.10 1.97 16 3 Si 0.89 20.31 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.50 -12.51 7.54 -34.44 -0.26 -12.77 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.05 1.12 1.64 -155.66 -0.26 0.86 16 10 C -0.07 -1.41 4.31 37.16 0.16 -1.25 16 11 S -0.01 -0.13 19.48 -107.50 -2.09 -2.23 16 12 C -0.04 -0.71 6.20 -38.12 -0.24 -0.95 16 13 C -0.21 -3.55 9.25 -39.22 -0.36 -3.92 16 14 C 0.15 2.36 11.13 -17.59 -0.20 2.16 16 15 N -0.51 -8.44 10.33 -11.10 -0.11 -8.56 16 16 C 0.14 2.39 6.60 -84.88 -0.56 1.83 16 17 C -0.10 -1.44 9.98 -39.46 -0.39 -1.83 16 18 C -0.10 -1.17 9.94 -39.95 -0.40 -1.57 16 19 C -0.13 -1.67 9.96 -39.91 -0.40 -2.07 16 20 C -0.08 -1.23 9.42 -39.58 -0.37 -1.60 16 21 C -0.09 -1.64 5.75 -106.65 -0.61 -2.25 16 22 C -0.21 -4.16 9.88 -26.73 -0.26 -4.43 16 23 C -0.15 -3.18 9.47 -26.73 -0.25 -3.43 16 24 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 25 H 0.06 1.12 7.39 -51.91 -0.38 0.73 16 26 H 0.09 2.02 7.59 -51.92 -0.39 1.62 16 27 H 0.14 2.17 5.65 -52.49 -0.30 1.88 16 28 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 2.04 6.95 -52.49 -0.36 1.68 16 33 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -27.76 318.52 -10.58 -38.33 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.36 Total: 4.14 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -4.50 Total: -29.23 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.60 Total: -31.11 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.09 Total: -2.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.76 -10.58 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594892349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.936 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds