Wall clock time and date at job start Fri Apr 10 2020 15:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00235 * 2 1 4 4 H 1.48491 * 109.47149 * 240.00204 * 3 2 1 5 5 H 1.48508 * 109.46808 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47435 * 119.99513 * 3 2 1 7 7 C 1.37879 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00556 * 173.81456 * 7 2 1 9 9 C 1.50703 * 119.99824 * 353.82037 * 7 2 1 10 10 C 1.52995 * 115.55166 * 84.90222 * 9 7 2 11 11 S 1.81007 * 109.47040 * 39.92724 * 10 9 7 12 12 C 1.76203 * 99.99898 * 179.97438 * 11 10 9 13 13 C 1.38732 * 121.06393 * 359.97438 * 12 11 10 14 14 C 1.38728 * 119.68397 * 179.97438 * 13 12 11 15 15 N 1.31327 * 121.87383 * 0.02562 * 14 13 12 16 16 C 1.33801 * 121.68858 * 359.97438 * 15 14 13 17 17 C 1.40556 * 120.98567 * 179.97438 * 16 15 14 18 18 C 1.36139 * 119.75521 * 180.02562 * 17 16 15 19 19 C 1.39267 * 121.02966 * 0.03009 * 18 17 16 20 20 C 1.36274 * 120.81315 * 359.97197 * 19 18 17 21 21 C 1.40135 * 119.63230 * 359.74265 * 20 19 18 22 22 C 1.53000 * 117.51899 * 230.60552 * 9 7 2 23 23 C 1.53003 * 117.49870 * 299.23717 * 9 7 2 24 24 H 0.97000 * 119.99830 * 354.94940 * 1 2 3 25 25 H 1.09005 * 109.47261 * 159.92169 * 10 9 7 26 26 H 1.08999 * 109.47616 * 279.92457 * 10 9 7 27 27 H 1.07997 * 120.16069 * 359.96174 * 13 12 11 28 28 H 1.08004 * 119.06453 * 180.02562 * 14 13 12 29 29 H 1.08004 * 120.12219 * 359.97438 * 17 16 15 30 30 H 1.07999 * 119.48563 * 179.97438 * 18 17 16 31 31 H 1.07992 * 119.58992 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.18487 * 180.02562 * 20 19 18 33 33 H 1.08996 * 117.50096 * 214.96915 * 22 9 7 34 34 H 1.09005 * 117.49599 * 359.97438 * 22 9 7 35 35 H 1.09004 * 117.49924 * 359.97194 * 23 9 7 36 36 H 1.08997 * 117.50074 * 144.97228 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1969 -0.1002 9 6 1.2577 -2.4953 0.1416 10 6 0.6965 -3.0782 -1.1569 11 16 1.8977 -2.8463 -2.4910 12 6 1.0189 -3.5877 -3.8262 13 6 -0.2432 -4.1321 -3.6379 14 6 -0.9097 -4.7083 -4.7095 15 7 -0.3803 -4.7570 -5.9104 16 6 0.8324 -4.2521 -6.1649 17 6 1.3852 -4.3128 -7.4557 18 6 2.6215 -3.7916 -7.6865 19 6 3.3526 -3.1967 -6.6613 20 6 2.8481 -3.1202 -5.3977 21 6 1.5759 -3.6415 -5.1269 22 6 1.7487 -3.4807 1.2041 23 6 0.4455 -2.7086 1.4206 24 1 -0.4850 0.8368 0.0740 25 1 0.5028 -4.1426 -1.0235 26 1 -0.2328 -2.5690 -1.4121 27 1 -0.7046 -4.1076 -2.6618 28 1 -1.8920 -5.1287 -4.5518 29 1 0.8315 -4.7720 -8.2614 30 1 3.0422 -3.8409 -8.6800 31 1 4.3314 -2.7910 -6.8703 32 1 3.4237 -2.6563 -4.6104 33 1 1.6719 -4.5442 0.9781 34 1 2.6125 -3.1880 1.8011 35 1 0.4518 -1.9080 2.1603 36 1 -0.4887 -3.2639 1.3369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594892349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:36 Heat of formation + Delta-G solvation = 60.193106 kcal Electronic energy + Delta-G solvation = -19125.018382 eV Core-core repulsion = 16279.159897 eV Total energy + Delta-G solvation = -2845.858485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57586 -38.50811 -37.93837 -34.43446 -34.02133 -31.66092 -31.05421 -29.38286 -27.42934 -25.39622 -24.42310 -23.23060 -22.94127 -21.19610 -19.34831 -18.60374 -18.05659 -17.73565 -16.66707 -16.50083 -15.80215 -15.59202 -15.45241 -15.17463 -15.05671 -14.75124 -14.48202 -14.13846 -13.86094 -13.28002 -13.00393 -12.82427 -12.73200 -12.53367 -12.42116 -12.31076 -12.09486 -11.91204 -11.66558 -11.40193 -10.75559 -10.48814 -10.39926 -9.94758 -9.77410 -9.57541 -8.31748 -8.13951 -6.24187 -0.65662 -0.13292 0.65774 0.93001 1.40857 1.42732 1.48149 1.59485 1.99046 2.41756 3.11672 3.16499 3.40038 3.43059 3.72050 3.75564 3.95165 4.12362 4.22906 4.25046 4.31343 4.45025 4.50669 4.59626 4.61973 4.64942 4.86372 4.88424 4.98780 5.05305 5.13580 5.20597 5.39750 5.47026 5.50308 5.55794 5.61283 5.74166 5.93974 6.31983 6.79307 6.93675 7.44424 8.93372 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.005157 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.799961 B = 5427.964340 C = 6145.324446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.040 3.960 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.499 4.499 8 H 0.052 0.948 9 C 0.020 3.980 10 C -0.053 4.053 11 S -0.040 6.040 12 C -0.056 4.056 13 C -0.215 4.215 14 C 0.149 3.851 15 N -0.511 5.511 16 C 0.118 3.882 17 C -0.112 4.112 18 C -0.086 4.086 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.184 4.184 23 C -0.150 4.150 24 H 0.260 0.740 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.190 0.810 29 H 0.151 0.849 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -8.319 -11.077 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.162 4.162 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.019 3.981 10 C -0.201 4.201 11 S 0.211 5.789 12 C -0.179 4.179 13 C -0.245 4.245 14 C -0.023 4.023 15 N -0.222 5.222 16 C -0.004 4.004 17 C -0.131 4.131 18 C -0.105 4.105 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.221 4.221 23 C -0.189 4.189 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.207 0.793 29 H 0.168 0.832 30 H 0.187 0.813 31 H 0.176 0.824 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.317 -7.976 -11.745 14.580 hybrid contribution -0.797 1.000 1.286 1.813 sum 2.520 -6.976 -10.460 12.822 Atomic orbital electron populations 1.70063 1.06847 1.27497 1.49175 1.25474 0.95346 1.01330 0.94069 0.85974 0.78845 0.80276 0.78851 1.19852 1.21195 1.19655 1.20468 0.92543 0.89881 1.50920 0.92962 1.18597 0.99622 0.94405 0.85522 1.23285 0.98839 1.01502 0.96507 1.85986 1.24871 1.68534 0.99556 1.23351 0.98431 0.97668 0.98414 1.22294 0.95379 1.04397 1.02465 1.23168 0.99805 0.92598 0.86742 1.68118 1.11312 1.19678 1.23114 1.19263 0.90837 0.95772 0.94576 1.21057 0.96687 1.01185 0.94166 1.21332 0.93288 0.95093 1.00827 1.21290 1.01492 0.98847 0.91694 1.21128 0.93779 0.99028 0.98935 1.18664 0.97411 1.03334 0.92465 1.23108 0.97638 0.96495 1.04828 1.22487 0.93712 1.01198 1.01521 0.93084 0.90051 0.91312 0.83933 0.79317 0.83156 0.81313 0.82446 0.85745 0.88823 0.90178 0.91873 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.08 12.93 21.45 0.28 -48.80 16 2 C 0.04 2.08 5.39 84.66 0.46 2.54 16 3 Si 0.93 42.31 29.55 68.60 2.03 44.33 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.50 -25.66 7.54 25.60 0.19 -25.47 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.02 0.92 1.64 -52.93 -0.09 0.83 16 10 C -0.05 -2.20 4.31 71.98 0.31 -1.89 16 11 S -0.04 -1.62 19.48 -56.49 -1.10 -2.72 16 12 C -0.06 -2.08 6.20 23.22 0.14 -1.94 16 13 C -0.22 -7.15 9.25 22.51 0.21 -6.94 16 14 C 0.15 4.38 11.13 84.89 0.94 5.33 16 15 N -0.51 -16.41 10.33 -189.03 -1.95 -18.37 16 16 C 0.12 3.79 6.60 40.22 0.27 4.06 16 17 C -0.11 -2.76 9.98 22.35 0.22 -2.54 16 18 C -0.09 -1.69 9.94 22.03 0.22 -1.47 16 19 C -0.11 -2.57 9.96 22.06 0.22 -2.35 16 20 C -0.11 -3.31 9.42 22.27 0.21 -3.10 16 21 C -0.11 -3.88 5.75 -21.18 -0.12 -4.00 16 22 C -0.18 -7.24 9.88 30.60 0.30 -6.94 16 23 C -0.15 -6.47 9.47 30.60 0.29 -6.18 16 24 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 25 H 0.08 2.94 7.39 -2.39 -0.02 2.93 16 26 H 0.07 3.11 7.59 -2.40 -0.02 3.10 16 27 H 0.14 4.49 5.65 -2.91 -0.02 4.47 16 28 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.12 3.89 6.95 -2.91 -0.02 3.87 16 33 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 34 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 35 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 36 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -60.93 318.52 4.11 -56.82 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.08 Total: 18.80 kcal Atomic # 6 Polarization: -53.84 SS G_CDS: 3.78 Total: -50.06 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.68 Total: -67.17 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -1.10 Total: -2.72 kcal Total: -60.93 4.11 -56.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594892349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.016 kcal (2) G-P(sol) polarization free energy of solvation -60.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds