Wall clock time and date at job start Fri Apr 10 2020 15:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86851 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47269 * 124.99868 * 13 12 11 15 15 C 1.40074 * 119.02460 * 89.99674 * 14 13 12 16 16 C 1.35602 * 121.93822 * 179.97438 * 15 14 13 17 17 C 1.40840 * 119.39164 * 0.02562 * 16 15 14 18 18 N 1.31021 * 138.56106 * 180.02562 * 17 16 15 19 19 O 1.21469 * 109.08538 * 179.97438 * 18 17 16 20 20 N 1.21472 * 116.28446 * 359.97438 * 19 18 17 21 21 C 1.31016 * 109.09465 * 359.97438 * 20 19 18 22 22 C 1.35594 * 119.02530 * 269.72987 * 14 13 12 23 23 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 24 24 N 1.28637 * 110.17796 * 359.72483 * 23 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.08004 * 126.91483 * 359.95495 * 11 10 9 29 29 H 1.09004 * 109.46987 * 244.99558 * 13 12 11 30 30 H 1.08991 * 109.47167 * 4.99567 * 13 12 11 31 31 H 1.07991 * 119.03297 * 0.02562 * 15 14 13 32 32 H 1.08004 * 120.30397 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.30697 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2835 -4.6683 0.8733 12 7 3.3137 -5.4525 0.4801 13 6 3.7535 -6.6857 1.1375 14 6 3.7682 -7.8114 0.1357 15 6 4.9372 -8.0541 -0.5967 16 6 5.0160 -9.0511 -1.5125 17 6 3.8936 -9.8709 -1.7401 18 7 3.5580 -10.8902 -2.4916 19 8 2.4072 -11.1975 -2.2535 20 7 1.8359 -10.5325 -1.4127 21 6 2.6551 -9.6142 -0.9631 22 6 2.6511 -8.5628 -0.0260 23 7 3.8403 -4.9294 -0.5715 24 7 3.2132 -3.8534 -0.8934 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 1.6346 -4.8272 1.7219 29 1 4.7565 -6.5449 1.5405 30 1 3.0672 -6.9298 1.9483 31 1 5.8015 -7.4293 -0.4266 32 1 5.9311 -9.2151 -2.0622 33 1 1.7654 -8.3547 0.5558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881208952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:59 Heat of formation + Delta-G solvation = 237.919542 kcal Electronic energy + Delta-G solvation = -20697.055506 eV Core-core repulsion = 17344.903354 eV Total energy + Delta-G solvation = -3352.152152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.95615 -42.64381 -39.46173 -35.41362 -35.05526 -33.54542 -32.85260 -31.64453 -31.08644 -28.47248 -27.30604 -25.62594 -24.37496 -23.41942 -21.73584 -21.39464 -20.35892 -19.22947 -19.15121 -18.29504 -17.03524 -16.49734 -16.11229 -15.42439 -15.08874 -14.86711 -14.53895 -14.22879 -13.38696 -13.29491 -13.15717 -12.99571 -12.50004 -12.18597 -12.15481 -12.08634 -11.73329 -11.57192 -11.07027 -10.77187 -10.70679 -10.26313 -10.07661 -9.75582 -9.54893 -9.34920 -9.00007 -8.47791 -8.19902 -6.02055 -4.02797 -0.41610 0.66754 1.54976 2.09308 2.51917 2.73890 3.08384 3.10345 3.33287 3.37464 3.40408 3.42004 3.49123 3.95887 4.15319 4.31654 4.48764 4.52292 4.76346 4.82120 4.91999 5.10425 5.17976 5.34927 5.37416 5.59452 5.70705 5.80265 5.95938 5.99379 6.19835 7.02641 7.06533 7.48472 7.57789 7.95818 8.11493 8.33321 9.00860 9.20834 9.60334 11.09083 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.035069 B = 0.003102 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.236314 B = 9022.973163 C = 9258.553522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.091 3.909 10 C 0.037 3.963 11 C -0.081 4.081 12 N -0.307 5.307 13 C 0.161 3.839 14 C -0.070 4.070 15 C -0.054 4.054 16 C -0.071 4.071 17 C 0.024 3.976 18 N -0.348 5.348 19 O 0.379 5.621 20 N -0.341 5.341 21 C 0.015 3.985 22 C -0.042 4.042 23 N -0.104 5.104 24 N -0.257 5.257 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.183 0.817 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -21.239 3.706 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.099 4.099 11 C -0.229 4.229 12 N -0.103 5.103 13 C 0.039 3.961 14 C -0.075 4.075 15 C -0.077 4.077 16 C -0.091 4.091 17 C -0.128 4.128 18 N -0.070 5.070 19 O 0.140 5.860 20 N -0.061 5.061 21 C -0.138 4.138 22 C -0.063 4.063 23 N -0.083 5.083 24 N -0.125 5.125 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.201 0.799 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.223 -22.144 2.107 23.715 hybrid contribution -0.054 1.572 1.299 2.040 sum 8.169 -20.572 3.406 22.395 Atomic orbital electron populations 1.69955 1.05984 1.26703 1.51087 1.24980 0.94879 0.99270 0.95310 0.86458 0.80194 0.83426 0.77510 1.19690 1.20931 1.21087 1.21075 0.93275 0.89720 1.50162 0.92211 1.17750 0.90886 0.87589 0.98560 1.23045 0.97735 0.97622 0.91528 1.23396 0.97402 0.96034 1.06082 1.47133 1.23084 1.18827 1.21283 1.20801 1.04061 0.78527 0.92670 1.19590 0.93754 0.95892 0.98232 1.20891 0.98004 0.95414 0.93355 1.19922 0.95943 0.94001 0.99219 1.22958 0.98211 0.95883 0.95749 1.75241 0.96855 1.14677 1.20216 1.85382 1.17285 1.43762 1.39614 1.75244 1.20294 1.06032 1.04554 1.22763 0.90355 0.99023 1.01611 1.19839 0.98973 0.91628 0.95889 1.78189 1.21602 1.07048 1.01453 1.75095 1.06918 1.07112 1.23376 0.92939 0.94489 0.94287 0.79946 0.87132 0.86508 0.83183 0.83230 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.50 -14.27 9.09 -34.44 -0.31 -14.58 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.09 2.32 5.55 -29.03 -0.16 2.16 16 10 C 0.04 0.82 6.44 -82.78 -0.53 0.29 16 11 C -0.08 -1.34 11.49 -17.05 -0.20 -1.54 16 12 N -0.31 -4.45 3.43 -62.44 -0.21 -4.66 16 13 C 0.16 1.32 6.53 -5.19 -0.03 1.28 16 14 C -0.07 -0.61 5.22 -104.88 -0.55 -1.15 16 15 C -0.05 -0.44 9.52 -39.84 -0.38 -0.82 16 16 C -0.07 -0.61 10.08 -39.54 -0.40 -1.01 16 17 C 0.02 0.27 7.76 -83.03 -0.64 -0.37 16 18 N -0.35 -4.01 12.29 31.88 0.39 -3.62 16 19 O 0.38 4.25 11.67 26.94 0.31 4.57 16 20 N -0.34 -4.04 12.29 31.89 0.39 -3.65 16 21 C 0.01 0.17 7.76 -83.03 -0.64 -0.48 16 22 C -0.04 -0.40 9.65 -39.54 -0.38 -0.78 16 23 N -0.10 -1.94 12.92 60.35 0.78 -1.16 16 24 N -0.26 -5.87 12.40 33.29 0.41 -5.46 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.18 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.11 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.12 0.58 7.98 -51.93 -0.41 0.16 16 31 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -34.46 304.26 -4.86 -39.32 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: -2.91 Total: -5.60 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -4.33 Total: -15.51 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 2.50 Total: -44.15 kcal Atomic # 8 Polarization: 4.25 SS G_CDS: 0.31 Total: 4.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.46 -4.86 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881208952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 277.237 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 242.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 237.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds