Wall clock time and date at job start Fri Apr 10 2020 15:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86851 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47269 * 124.99868 * 13 12 11 15 15 C 1.40074 * 119.02460 * 89.99674 * 14 13 12 16 16 C 1.35602 * 121.93822 * 179.97438 * 15 14 13 17 17 C 1.40840 * 119.39164 * 0.02562 * 16 15 14 18 18 N 1.31021 * 138.56106 * 180.02562 * 17 16 15 19 19 O 1.21469 * 109.08538 * 179.97438 * 18 17 16 20 20 N 1.21472 * 116.28446 * 359.97438 * 19 18 17 21 21 C 1.31016 * 109.09465 * 359.97438 * 20 19 18 22 22 C 1.35594 * 119.02530 * 269.72987 * 14 13 12 23 23 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 24 24 N 1.28637 * 110.17796 * 359.72483 * 23 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.08004 * 126.91483 * 359.95495 * 11 10 9 29 29 H 1.09004 * 109.46987 * 244.99558 * 13 12 11 30 30 H 1.08991 * 109.47167 * 4.99567 * 13 12 11 31 31 H 1.07991 * 119.03297 * 0.02562 * 15 14 13 32 32 H 1.08004 * 120.30397 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.30697 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2835 -4.6683 0.8733 12 7 3.3137 -5.4525 0.4801 13 6 3.7535 -6.6857 1.1375 14 6 3.7682 -7.8114 0.1357 15 6 4.9372 -8.0541 -0.5967 16 6 5.0160 -9.0511 -1.5125 17 6 3.8936 -9.8709 -1.7401 18 7 3.5580 -10.8902 -2.4916 19 8 2.4072 -11.1975 -2.2535 20 7 1.8359 -10.5325 -1.4127 21 6 2.6551 -9.6142 -0.9631 22 6 2.6511 -8.5628 -0.0260 23 7 3.8403 -4.9294 -0.5715 24 7 3.2132 -3.8534 -0.8934 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 1.6346 -4.8272 1.7219 29 1 4.7565 -6.5449 1.5405 30 1 3.0672 -6.9298 1.9483 31 1 5.8015 -7.4293 -0.4266 32 1 5.9311 -9.2151 -2.0622 33 1 1.7654 -8.3547 0.5558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881208952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:58 Heat of formation + Delta-G solvation = 214.728545 kcal Electronic energy + Delta-G solvation = -20698.061143 eV Core-core repulsion = 17344.903354 eV Total energy + Delta-G solvation = -3353.157789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.77526 -44.00766 -40.19321 -36.45431 -35.92709 -35.32524 -33.96221 -32.87453 -32.38064 -29.68173 -28.83348 -26.39938 -25.47023 -25.17389 -22.69515 -22.46889 -21.78692 -20.07142 -19.94489 -19.11239 -18.53651 -17.99971 -17.36869 -16.52596 -16.31721 -15.92609 -15.58008 -15.51059 -14.61987 -14.38872 -14.10196 -14.00027 -13.82590 -13.53514 -13.45979 -13.01856 -12.94241 -12.79764 -12.63735 -12.46313 -12.25277 -11.87655 -11.62433 -11.33662 -10.94133 -10.84287 -10.56640 -9.80943 -9.71986 -8.17307 -6.25584 -1.17096 -0.10025 0.75385 0.81547 1.41185 1.42969 1.55404 1.59626 1.82155 1.96059 2.28711 2.31199 2.45964 2.64189 3.15917 3.22829 3.50567 3.58405 3.77359 3.91179 4.10153 4.16064 4.35893 4.39115 4.50790 4.54601 4.70361 4.79976 4.93695 5.12234 5.32920 5.33960 5.47942 5.57415 5.79147 5.86902 6.24798 6.83729 7.28433 7.41316 7.76758 8.93726 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.035069 B = 0.003102 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.236314 B = 9022.973163 C = 9258.553522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.046 0.954 9 C 0.101 3.899 10 C -0.012 4.012 11 C -0.046 4.046 12 N -0.285 5.285 13 C 0.149 3.851 14 C -0.067 4.067 15 C -0.052 4.052 16 C -0.079 4.079 17 C 0.014 3.986 18 N -0.362 5.362 19 O 0.374 5.626 20 N -0.357 5.357 21 C 0.001 3.999 22 C -0.050 4.050 23 N -0.109 5.109 24 N -0.311 5.311 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.003 0.997 28 H 0.229 0.771 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.173 0.827 32 H 0.171 0.829 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.155 -21.634 5.652 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.064 0.936 9 C 0.062 3.938 10 C -0.149 4.149 11 C -0.196 4.196 12 N -0.081 5.081 13 C 0.031 3.969 14 C -0.072 4.072 15 C -0.074 4.074 16 C -0.099 4.099 17 C -0.138 4.138 18 N -0.085 5.085 19 O 0.137 5.863 20 N -0.078 5.078 21 C -0.151 4.151 22 C -0.071 4.071 23 N -0.088 5.088 24 N -0.178 5.178 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.021 0.979 28 H 0.245 0.755 29 H 0.162 0.838 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.188 0.812 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.593 -22.585 4.049 24.870 hybrid contribution -0.430 1.554 0.738 1.773 sum 9.163 -21.031 4.787 23.435 Atomic orbital electron populations 1.70050 1.07294 1.27775 1.51746 1.25798 0.95760 1.02708 0.94859 0.85456 0.78734 0.79226 0.77967 1.19638 1.20528 1.19676 1.21333 0.92843 0.91520 1.50196 0.93554 1.17379 0.91208 0.88580 0.96646 1.22615 0.98726 0.99122 0.94462 1.23779 0.96900 0.93784 1.05116 1.47552 1.21337 1.19517 1.19673 1.21519 1.07230 0.75350 0.92831 1.19715 0.93602 0.95725 0.98176 1.21236 0.98635 0.95025 0.92476 1.20258 0.96075 0.93802 0.99751 1.23369 0.98980 0.95917 0.95542 1.75195 0.97062 1.15386 1.20887 1.85357 1.17294 1.43897 1.39759 1.75191 1.20901 1.06637 1.05070 1.23137 0.90392 0.99430 1.02177 1.20147 1.00039 0.91172 0.95721 1.78036 1.21533 1.06262 1.02944 1.74999 1.08234 1.09349 1.25256 0.92587 0.94696 0.97876 0.75506 0.83832 0.82131 0.80944 0.81192 0.81498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.52 -30.11 9.09 25.60 0.23 -29.87 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.10 5.28 5.55 29.10 0.16 5.44 16 10 C -0.01 -0.51 6.44 41.59 0.27 -0.24 16 11 C -0.05 -1.38 11.49 83.49 0.96 -0.42 16 12 N -0.29 -7.21 3.43 -351.47 -1.21 -8.42 16 13 C 0.15 1.65 6.53 85.63 0.56 2.21 16 14 C -0.07 -0.92 5.22 -20.03 -0.10 -1.03 16 15 C -0.05 -0.68 9.52 22.10 0.21 -0.47 16 16 C -0.08 -1.21 10.08 22.30 0.22 -0.98 16 17 C 0.01 0.30 7.76 42.62 0.33 0.63 16 18 N -0.36 -8.32 12.29 -57.46 -0.71 -9.03 16 19 O 0.37 8.50 11.67 139.35 1.63 10.13 16 20 N -0.36 -8.39 12.29 -57.42 -0.71 -9.09 16 21 C 0.00 0.01 7.76 42.62 0.33 0.34 16 22 C -0.05 -0.80 9.65 22.30 0.22 -0.59 16 23 N -0.11 -3.85 12.92 37.02 0.48 -3.37 16 24 N -0.31 -14.22 12.40 -48.60 -0.60 -14.82 16 25 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 26 H 0.03 1.79 8.12 -2.38 -0.02 1.77 16 27 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.23 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.14 0.83 8.07 -2.38 -0.02 0.81 16 30 H 0.16 0.50 7.98 -2.39 -0.02 0.48 16 31 H 0.17 1.47 8.06 -2.92 -0.02 1.44 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -78.52 304.26 6.20 -72.32 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: 1.16 Total: -5.68 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.85 Total: -24.13 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -2.46 Total: -99.61 kcal Atomic # 8 Polarization: 8.50 SS G_CDS: 1.63 Total: 10.13 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.52 6.20 -72.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881208952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 287.049 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 208.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds