Wall clock time and date at job start Fri Apr 10 2020 15:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42104 * 110.54224 * 2 1 4 4 O 1.42100 * 110.54407 * 223.24725 * 2 1 3 5 5 N 1.65599 * 104.44563 * 111.62428 * 2 1 3 6 6 C 1.46494 * 120.00224 * 65.00387 * 5 2 1 7 7 C 1.53001 * 109.47329 * 164.99783 * 6 5 2 8 8 N 1.46503 * 109.47115 * 179.97438 * 7 6 5 9 9 C 1.38826 * 120.00054 * 180.02562 * 8 7 6 10 10 C 1.39791 * 119.58266 * 359.97438 * 9 8 7 11 11 C 1.38599 * 119.49248 * 180.02562 * 10 9 8 12 12 C 1.38391 * 118.67476 * 0.02562 * 11 10 9 13 13 C 1.40548 * 119.15144 * 359.97438 * 12 11 10 14 14 C 1.41318 * 119.78154 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00336 * 8.96514 * 14 13 12 16 16 C 1.40026 * 120.00025 * 188.97271 * 14 13 12 17 17 N 1.30743 * 120.00038 * 195.97185 * 16 14 13 18 18 Si 1.86801 * 119.99948 * 15.68904 * 16 14 13 19 19 H 1.48510 * 109.47084 * 270.28029 * 18 16 14 20 20 H 1.48499 * 109.47034 * 30.27869 * 18 16 14 21 21 H 1.48498 * 109.47207 * 150.27964 * 18 16 14 22 22 N 1.31954 * 119.58669 * 180.29727 * 9 8 7 23 23 H 1.09002 * 109.47121 * 308.37573 * 1 2 3 24 24 H 1.09005 * 109.46738 * 68.37882 * 1 2 3 25 25 H 1.08997 * 109.47097 * 188.37725 * 1 2 3 26 26 H 0.97008 * 120.00000 * 244.99741 * 5 2 1 27 27 H 1.09007 * 109.47540 * 44.99619 * 6 5 2 28 28 H 1.09007 * 109.47169 * 284.99532 * 6 5 2 29 29 H 1.08997 * 109.47608 * 59.99835 * 7 6 5 30 30 H 1.09003 * 109.47278 * 299.99440 * 7 6 5 31 31 H 0.97005 * 120.00177 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.25743 * 0.04371 * 10 9 8 33 33 H 1.07994 * 120.66289 * 179.97438 * 11 10 9 34 34 H 1.08000 * 120.42113 * 180.02562 * 12 11 10 35 35 H 0.96997 * 119.99957 * 354.51109 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2271 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8508 7 6 2.6874 -2.3830 3.0902 8 7 2.3505 -3.7625 3.4506 9 6 2.9523 -4.3594 4.5500 10 6 3.8789 -3.6363 5.3069 11 6 4.4789 -4.2343 6.4039 12 6 4.1395 -5.5388 6.7174 13 6 3.2008 -6.2131 5.9177 14 6 2.8441 -7.5453 6.2261 15 1 3.1775 -7.9935 7.1505 16 6 2.0584 -8.2843 5.3332 17 7 1.4692 -9.3806 5.7338 18 14 1.8456 -7.6997 3.5719 19 1 0.6660 -6.8015 3.4875 20 1 3.0614 -6.9615 3.1451 21 1 1.6403 -8.8713 2.6828 22 7 2.6472 -5.6043 4.8638 23 1 -0.3633 0.6380 0.8057 24 1 -0.3633 0.3787 -0.9554 25 1 -0.3633 -1.0167 0.1497 26 1 2.6920 -0.0236 2.1257 27 1 2.1394 -2.6334 1.0219 28 1 0.8242 -2.0405 2.0646 29 1 2.4389 -1.7203 3.9191 30 1 3.7540 -2.3132 2.8764 31 1 1.7064 -4.2585 2.9214 32 1 4.1251 -2.6195 5.0391 33 1 5.1976 -3.6934 7.0015 34 1 4.5895 -6.0320 7.5663 35 1 1.6395 -9.7251 6.6244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337693793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:11 Heat of formation + Delta-G solvation = -48.999984 kcal Electronic energy + Delta-G solvation = -19783.711871 eV Core-core repulsion = 16522.269155 eV Total energy + Delta-G solvation = -3261.442716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.83685 -37.44766 -36.76210 -36.24030 -34.54009 -33.38624 -31.10950 -29.91021 -29.80395 -27.22362 -25.33180 -22.97920 -21.81154 -20.46365 -19.68578 -18.36148 -17.89261 -17.15675 -16.61352 -16.14674 -15.49444 -15.35691 -14.92094 -14.52604 -14.13951 -13.73360 -13.70990 -13.57805 -13.18168 -12.87714 -12.49082 -12.41983 -12.31157 -12.26284 -12.07407 -11.81198 -11.59872 -11.36100 -10.82827 -10.64954 -10.15979 -9.86542 -9.74874 -9.46622 -8.95959 -8.44901 -7.78245 -7.25916 -6.91161 -4.74992 -0.07632 2.32573 2.68554 2.81860 3.46238 3.51889 3.64174 3.77133 3.89595 3.99289 4.35399 4.39070 4.51881 4.61264 4.63711 4.87921 5.16746 5.25600 5.31650 5.59491 5.80029 5.83452 5.86586 6.27321 6.48369 6.55516 6.62776 6.63478 7.24447 7.44009 7.47143 7.60094 7.86765 7.99903 8.27704 8.46100 8.73518 9.61393 10.00162 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.025519 B = 0.003759 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.940860 B = 7447.553849 C = 8289.071389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.620 3.380 3 O -0.961 6.961 4 O -0.954 6.954 5 N -1.116 6.116 6 C 0.101 3.899 7 C 0.135 3.865 8 N -0.741 5.741 9 C 0.437 3.563 10 C -0.365 4.365 11 C -0.019 4.019 12 C -0.305 4.305 13 C 0.287 3.713 14 C -0.480 4.480 15 H 0.082 0.918 16 C 0.049 3.951 17 N -0.805 5.805 18 Si 1.147 2.853 19 H -0.288 1.288 20 H -0.279 1.279 21 H -0.330 1.330 22 N -0.616 5.616 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.420 0.580 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.396 0.604 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 16.500 -8.879 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.711 3.289 3 O -0.951 6.951 4 O -0.944 6.944 5 N -0.876 5.876 6 C -0.025 4.025 7 C 0.008 3.992 8 N -0.379 5.379 9 C 0.200 3.800 10 C -0.391 4.391 11 C -0.043 4.043 12 C -0.328 4.328 13 C 0.163 3.837 14 C -0.512 4.512 15 H 0.100 0.900 16 C -0.173 4.173 17 N -0.426 5.426 18 Si 0.981 3.019 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.263 1.263 22 N -0.344 5.344 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.255 0.745 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.826 15.950 -11.409 19.980 hybrid contribution 0.642 0.682 2.722 2.878 sum -3.184 16.632 -8.688 19.032 Atomic orbital electron populations 1.30530 1.28441 1.11833 1.11550 1.04577 0.77490 0.73735 0.73067 1.93624 1.78036 1.37736 1.85694 1.93636 1.76919 1.61738 1.62135 1.55424 1.74438 1.21017 1.36740 1.21458 0.99671 0.81980 0.99430 1.21174 0.99161 0.83940 0.94921 1.44007 1.49380 1.12930 1.31586 1.18001 0.88045 0.88683 0.85275 1.20466 1.11895 1.01334 1.05396 1.20702 0.95282 0.94081 0.94200 1.21426 1.08287 0.96679 1.06413 1.18170 0.86891 0.92970 0.85629 1.20699 1.28606 0.95937 1.05956 0.90004 1.27717 0.88901 0.92691 1.07945 1.70621 1.30016 1.19922 1.22079 0.82059 0.78240 0.71462 0.70165 1.21590 1.20595 1.26322 1.66214 1.35335 1.09367 1.23482 0.85212 0.85373 0.85233 0.74539 0.89308 0.91066 0.91817 0.91579 0.76951 0.88278 0.88229 0.88161 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.92 10.89 101.05 1.10 -1.81 16 2 S 2.62 20.04 6.10 -107.50 -0.66 19.38 16 3 O -0.96 -10.49 18.08 -57.54 -1.04 -11.53 16 4 O -0.95 -11.27 17.50 -57.54 -1.01 -12.28 16 5 N -1.12 -8.06 5.88 -10.61 -0.06 -8.12 16 6 C 0.10 0.88 6.25 -4.04 -0.03 0.86 16 7 C 0.14 1.61 5.03 -4.04 -0.02 1.59 16 8 N -0.74 -12.46 5.72 -60.39 -0.35 -12.80 16 9 C 0.44 9.48 7.65 -155.32 -1.19 8.29 16 10 C -0.37 -7.46 9.34 -38.87 -0.36 -7.82 16 11 C -0.02 -0.39 10.15 -39.39 -0.40 -0.79 16 12 C -0.31 -7.27 9.83 -38.66 -0.38 -7.65 16 13 C 0.29 7.54 6.27 -85.00 -0.53 7.00 16 14 C -0.48 -13.12 9.51 -37.74 -0.36 -13.48 16 15 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 16 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 17 N -0.80 -21.88 13.65 55.55 0.76 -21.12 16 18 Si 1.15 27.70 25.92 -169.99 -4.41 23.30 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.83 6.54 56.52 0.37 -6.46 16 21 H -0.33 -7.87 7.11 56.52 0.40 -7.46 16 22 N -0.62 -15.42 5.04 -10.33 -0.05 -15.47 16 23 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 25 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.42 2.52 8.62 -34.47 -0.30 2.23 16 27 H 0.09 0.82 7.69 -51.93 -0.40 0.42 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 30 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 31 H 0.40 6.35 8.59 -40.82 -0.35 6.00 16 32 H 0.10 1.73 6.68 -52.49 -0.35 1.38 16 33 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.28 7.38 8.73 -40.82 -0.36 7.03 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -35.23 311.96 -8.74 -43.97 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.36 Total: 2.55 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.26 Total: -12.57 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.30 Total: -57.51 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -2.05 Total: -23.81 kcal Atomic # 14 Polarization: 27.70 SS G_CDS: -4.41 Total: 23.30 kcal Atomic # 16 Polarization: 20.04 SS G_CDS: -0.66 Total: 19.38 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.23 -8.74 -43.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337693793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.031 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds