Wall clock time and date at job start Fri Apr 10 2020 15:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48504 * 109.46923 * 270.00211 * 3 2 1 5 5 H 1.48498 * 109.47326 * 29.99824 * 3 2 1 6 6 H 1.48499 * 109.46937 * 150.00240 * 3 2 1 7 7 C 1.40047 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00229 * 359.97438 * 7 2 1 10 10 O 1.21694 * 120.00074 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00028 * 179.97438 * 9 7 2 12 12 C 1.46638 * 126.58411 * 0.02885 * 11 9 7 13 13 C 1.50807 * 107.75741 * 179.97438 * 12 11 9 14 14 C 1.38439 * 131.22911 * 179.97438 * 13 12 11 15 15 C 1.38217 * 120.39009 * 180.02562 * 14 13 12 16 16 C 1.38048 * 120.09810 * 359.97438 * 15 14 13 17 17 C 1.39225 * 119.82144 * 0.02562 * 16 15 14 18 18 C 1.48466 * 120.06563 * 179.97438 * 17 16 15 19 19 N 1.34050 * 126.67414 * 179.71362 * 18 17 16 20 20 N 1.28980 * 107.26762 * 179.83137 * 19 18 17 21 21 N 1.28731 * 108.94631 * 0.43244 * 20 19 18 22 22 H 0.96998 * 125.34169 * 179.71772 * 21 20 19 23 23 N 1.28873 * 109.31553 * 359.72399 * 21 20 19 24 24 C 1.38002 * 108.78591 * 0.05602 * 13 12 11 25 25 C 1.46647 * 126.58369 * 180.02562 * 11 9 7 26 26 H 0.97006 * 119.99932 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.81272 * 299.54620 * 12 11 9 28 28 H 1.09004 * 109.81012 * 60.38363 * 12 11 9 29 29 H 1.07990 * 119.78532 * 0.07968 * 14 13 12 30 30 H 1.07999 * 119.95129 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.08917 * 180.02562 * 16 15 14 32 32 H 1.09005 * 109.81309 * 299.54439 * 25 11 9 33 33 H 1.08996 * 109.81559 * 60.45843 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6477 -0.0016 12 6 3.4056 -3.8159 -0.0022 13 6 3.6978 -5.2954 -0.0027 14 6 4.8960 -5.9887 -0.0038 15 6 4.9040 -7.3709 -0.0046 16 6 3.7137 -8.0701 -0.0037 17 6 2.5049 -7.3793 -0.0026 18 6 1.2216 -8.1258 -0.0022 19 7 -0.0110 -7.5991 0.0042 20 7 -0.8471 -8.5812 -0.0016 21 7 -0.1909 -9.6887 -0.0021 22 1 -0.5856 -10.5747 -0.0021 23 7 1.0727 -9.4355 -0.0025 24 6 2.5021 -5.9845 -0.0037 25 6 1.3660 -4.9934 -0.0023 26 1 -0.4850 0.8401 0.0004 27 1 3.8303 -3.3552 -0.8942 28 1 3.8310 -3.3554 0.8895 29 1 5.8297 -5.4462 -0.0032 30 1 5.8429 -7.9046 -0.0050 31 1 3.7202 -9.1501 -0.0039 32 1 0.7555 -5.1321 0.8901 33 1 0.7549 -5.1309 -0.8942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592671866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:54 Heat of formation + Delta-G solvation = 100.030876 kcal Electronic energy + Delta-G solvation = -21312.192797 eV Core-core repulsion = 17954.061344 eV Total energy + Delta-G solvation = -3358.131453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.49346 -41.41190 -39.11924 -36.75345 -35.51358 -34.71762 -34.57661 -32.10335 -31.75047 -29.21537 -28.10056 -26.21638 -25.58611 -24.92164 -22.35459 -21.88058 -21.30713 -20.13706 -18.68024 -18.18846 -17.72912 -17.16555 -16.71973 -16.65074 -16.27541 -15.60460 -15.34948 -15.01521 -14.49682 -14.27410 -13.85236 -13.74960 -13.66907 -13.30741 -13.24475 -13.02189 -12.71468 -12.55906 -12.43366 -12.28390 -12.17354 -11.99411 -11.97900 -11.89203 -10.94285 -9.99025 -9.92633 -9.61606 -9.02170 -8.32188 -6.89080 -0.32988 0.15340 0.30894 1.29581 1.40995 1.41707 1.44072 1.60088 2.22516 2.41928 2.59126 2.71147 2.74185 3.14955 3.37939 3.55515 3.61999 4.07005 4.19410 4.33426 4.41527 4.50924 4.55971 4.65335 4.72382 4.80548 4.91872 4.96091 5.30169 5.35775 5.41464 5.46206 5.60340 5.64875 5.92079 5.97644 6.33193 6.83203 7.09760 7.40236 8.38628 8.64078 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.004507 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.923600 B = 6210.819446 C = 7434.247680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.243 1.243 7 C -0.558 4.558 8 H 0.095 0.905 9 C 0.555 3.445 10 O -0.629 6.629 11 N -0.653 5.653 12 C 0.157 3.843 13 C -0.110 4.110 14 C -0.065 4.065 15 C -0.102 4.102 16 C -0.071 4.071 17 C -0.018 4.018 18 C 0.206 3.794 19 N -0.307 5.307 20 N -0.064 5.064 21 N -0.196 5.196 22 H 0.495 0.505 23 N -0.281 5.281 24 C -0.081 4.081 25 C 0.171 3.829 26 H 0.276 0.724 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.041 0.959 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.076 -19.267 -0.007 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.166 1.166 7 C -0.594 4.594 8 H 0.114 0.886 9 C 0.363 3.637 10 O -0.516 6.516 11 N -0.391 5.391 12 C 0.034 3.966 13 C -0.111 4.111 14 C -0.084 4.084 15 C -0.119 4.119 16 C -0.091 4.091 17 C -0.022 4.022 18 C -0.073 4.073 19 N -0.178 5.178 20 N -0.059 5.059 21 N -0.047 5.047 22 H 0.355 0.645 23 N -0.134 5.134 24 C -0.083 4.083 25 C 0.047 3.953 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.183 0.817 30 H 0.200 0.800 31 H 0.179 0.821 32 H 0.059 0.941 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.480 -19.160 0.000 22.336 hybrid contribution -0.668 0.277 -0.012 0.723 sum 10.812 -18.883 -0.012 21.759 Atomic orbital electron populations 1.70217 1.09817 1.29206 1.35970 1.27117 0.95564 1.05217 0.91034 0.84923 0.78831 0.74375 0.79581 1.18413 1.19835 1.16600 1.21371 0.94859 0.88843 1.54328 0.88649 1.18503 0.86337 0.82526 0.76326 1.90576 1.16208 1.86887 1.57899 1.48208 1.06965 1.04305 1.79586 1.20151 0.81885 0.92198 1.02365 1.20567 0.94084 0.94625 1.01819 1.21060 0.96475 0.94751 0.96118 1.21481 0.99031 0.92966 0.98460 1.21383 0.89597 1.01358 0.96778 1.16883 0.88538 0.88921 1.07871 1.23939 0.94315 0.87077 1.01974 1.76320 0.99770 1.22902 1.18822 1.78919 1.22466 0.88991 1.15484 1.47803 1.01453 1.11995 1.43480 0.64526 1.74801 1.00368 1.16137 1.22127 1.20221 0.95636 0.92634 0.99848 1.19659 0.93911 0.82309 0.99422 0.91400 0.90368 0.90394 0.81676 0.80038 0.82120 0.94117 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.91 11.83 21.84 0.26 -51.65 16 2 C 0.03 1.46 5.50 85.30 0.47 1.93 16 3 Si 1.00 41.11 29.56 68.60 2.03 43.14 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.24 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.56 -32.51 9.09 24.83 0.23 -32.29 16 8 H 0.10 4.88 7.21 -2.91 -0.02 4.86 16 9 C 0.56 34.84 7.80 86.36 0.67 35.51 16 10 O -0.63 -45.69 15.39 -4.33 -0.07 -45.76 16 11 N -0.65 -33.57 3.34 -834.54 -2.79 -36.36 16 12 C 0.16 6.00 6.13 85.64 0.52 6.52 16 13 C -0.11 -3.40 6.22 -19.84 -0.12 -3.52 16 14 C -0.07 -1.28 10.03 22.31 0.22 -1.06 16 15 C -0.10 -1.54 10.03 22.22 0.22 -1.32 16 16 C -0.07 -1.40 9.70 22.46 0.22 -1.18 16 17 C -0.02 -0.54 5.88 -20.01 -0.12 -0.66 16 18 C 0.21 6.31 7.93 137.38 1.09 7.40 16 19 N -0.31 -11.08 11.25 -52.18 -0.59 -11.66 16 20 N -0.06 -1.83 13.47 37.02 0.50 -1.33 16 21 N -0.20 -3.72 7.90 37.02 0.29 -3.43 16 22 H 0.50 3.58 8.96 -347.54 -3.12 0.46 16 23 N -0.28 -6.46 12.08 -52.12 -0.63 -7.09 16 24 C -0.08 -2.89 6.10 -19.60 -0.12 -3.01 16 25 C 0.17 8.09 5.62 85.63 0.48 8.57 16 26 H 0.28 15.68 8.29 -92.70 -0.77 14.92 16 27 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.17 2.08 8.06 -2.92 -0.02 2.06 16 30 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.16 2.28 7.88 -2.91 -0.02 2.26 16 32 H 0.04 2.11 8.13 -2.38 -0.02 2.09 16 33 H 0.04 2.09 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -90.51 297.19 0.84 -89.66 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -1.93 Total: 7.56 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 3.77 Total: 16.92 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -2.95 Total: -111.52 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.07 Total: -45.76 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -90.51 0.84 -89.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592671866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.693 kcal (2) G-P(sol) polarization free energy of solvation -90.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds