Wall clock time and date at job start Fri Apr 10 2020 15:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47420 * 264.70989 * 3 2 1 5 5 H 1.48509 * 109.46939 * 24.70985 * 3 2 1 6 6 H 1.48497 * 109.47189 * 144.70969 * 3 2 1 7 7 C 1.40134 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99903 * 349.14975 * 7 2 1 9 9 C 1.41758 * 120.00180 * 169.14146 * 7 2 1 10 10 O 1.21774 * 119.99471 * 344.70733 * 9 7 2 11 11 N 1.34774 * 119.99942 * 164.69853 * 9 7 2 12 12 C 1.46504 * 124.90649 * 354.95939 * 11 9 7 13 13 C 1.53741 * 105.21677 * 179.97438 * 12 11 9 14 14 C 1.51245 * 104.48279 * 359.97438 * 13 12 11 15 15 C 1.37827 * 130.92470 * 179.97438 * 14 13 12 16 16 C 1.39436 * 120.05445 * 179.23187 * 15 14 13 17 17 C 1.48346 * 120.19554 * 180.22964 * 16 15 14 18 18 N 1.34096 * 126.68026 * 0.12226 * 17 16 15 19 19 N 1.28990 * 107.25796 * 179.86810 * 18 17 16 20 20 N 1.28722 * 108.96378 * 0.39942 * 19 18 17 21 21 H 0.97003 * 125.33049 * 179.71926 * 20 19 18 22 22 N 1.28867 * 109.33641 * 359.74750 * 20 19 18 23 23 C 1.39507 * 119.60586 * 0.66484 * 16 15 14 24 24 C 1.37464 * 120.12532 * 359.58428 * 23 16 15 25 25 C 1.38933 * 108.47511 * 359.74009 * 14 13 12 26 26 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 27 27 H 1.09006 * 110.29237 * 298.93270 * 12 11 9 28 28 H 1.09000 * 110.29429 * 60.95897 * 12 11 9 29 29 H 1.09002 * 110.43438 * 118.74861 * 13 12 11 30 30 H 1.09003 * 110.43010 * 241.24612 * 13 12 11 31 31 H 1.07996 * 119.96802 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.93672 * 179.56845 * 23 16 15 33 33 H 1.07992 * 119.78884 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.5996 1.9820 -1.3940 5 1 1.3862 2.6824 0.5853 6 1 3.4774 1.4751 0.8088 7 6 2.0070 -1.2136 -0.0005 8 1 1.4815 -2.1406 0.1751 9 6 3.4055 -1.2245 -0.2318 10 8 3.9529 -0.2424 -0.6997 11 7 4.1293 -2.3216 0.0663 12 6 3.6036 -3.5186 0.7274 13 6 4.8016 -4.4754 0.8420 14 6 5.9511 -3.7189 0.2144 15 6 7.2711 -4.0710 0.0319 16 6 8.1481 -3.1897 -0.5992 17 6 9.5683 -3.5676 -0.8018 18 7 10.1511 -4.7184 -0.4356 19 7 11.3884 -4.6518 -0.7940 20 7 11.6004 -3.5133 -1.3559 21 1 12.4516 -3.2129 -1.7111 22 7 10.5049 -2.8348 -1.3721 23 6 7.6843 -1.9468 -1.0308 24 6 6.3681 -1.5980 -0.8419 25 6 5.4826 -2.4839 -0.2163 26 1 -0.4850 0.8400 -0.0004 27 1 3.2238 -3.2675 1.7179 28 1 2.8153 -3.9685 0.1239 29 1 5.0155 -4.6939 1.8882 30 1 4.6070 -5.3962 0.2921 31 1 7.6235 -5.0352 0.3672 32 1 8.3607 -1.2572 -1.5140 33 1 6.0150 -0.6343 -1.1778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592672136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:47 Heat of formation + Delta-G solvation = 108.591920 kcal Electronic energy + Delta-G solvation = -21217.001164 eV Core-core repulsion = 17859.240946 eV Total energy + Delta-G solvation = -3357.760218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.36739 -40.39579 -37.69436 -35.91259 -34.22323 -33.20151 -33.01938 -31.72406 -29.66199 -28.64801 -27.08997 -24.57879 -24.15676 -22.74754 -22.19626 -20.60760 -19.74559 -19.05873 -17.19555 -17.07647 -16.22744 -15.92564 -15.63739 -15.47164 -14.79585 -14.14099 -13.60734 -13.39071 -13.23989 -12.77097 -12.61979 -12.55866 -12.42080 -12.02348 -11.86497 -11.59892 -11.50542 -11.33778 -11.23507 -11.07632 -10.98038 -10.52174 -10.50314 -9.77641 -9.30252 -9.25403 -8.49988 -8.16957 -7.07096 -6.93730 -5.20542 0.94171 1.32118 1.75632 2.26280 2.55159 3.27591 3.32977 3.52542 3.77372 3.88446 3.91688 4.23425 4.29894 4.35214 4.91034 5.01286 5.20916 5.31820 5.39559 5.53339 5.53634 5.61150 5.70126 5.98833 6.05813 6.14716 6.28198 6.33874 6.37494 6.53546 6.70116 6.83626 6.93699 7.07945 7.44974 7.69400 8.06582 8.20675 8.35460 8.79411 9.72726 10.04957 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.032333 B = 0.004056 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.784319 B = 6901.354489 C = 7687.351847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.104 3.896 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.317 1.317 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.092 0.908 9 C 0.546 3.454 10 O -0.602 6.602 11 N -0.555 5.555 12 C 0.113 3.887 13 C -0.081 4.081 14 C -0.177 4.177 15 C -0.023 4.023 16 C -0.091 4.091 17 C 0.246 3.754 18 N -0.278 5.278 19 N -0.059 5.059 20 N -0.235 5.235 21 H 0.472 0.528 22 N -0.307 5.307 23 C -0.044 4.044 24 C -0.156 4.156 25 C 0.216 3.784 26 H 0.289 0.711 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.885 -7.349 0.057 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.118 4.118 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.248 1.248 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.110 0.890 9 C 0.363 3.637 10 O -0.495 6.495 11 N -0.272 5.272 12 C -0.010 4.010 13 C -0.118 4.118 14 C -0.181 4.181 15 C -0.044 4.044 16 C -0.096 4.096 17 C -0.033 4.033 18 N -0.151 5.151 19 N -0.054 5.054 20 N -0.080 5.080 21 H 0.325 0.675 22 N -0.158 5.158 23 C -0.065 4.065 24 C -0.178 4.178 25 C 0.112 3.888 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 15.213 -7.139 -0.112 16.805 hybrid contribution 0.348 1.027 -0.279 1.119 sum 15.560 -6.113 -0.391 16.723 Atomic orbital electron populations 1.69524 1.08254 1.30878 1.34382 1.25960 0.94840 1.02429 0.88552 0.85117 0.77761 0.76787 0.80162 1.19799 1.24811 1.18917 1.19926 0.90026 0.96686 1.48431 0.89002 1.16937 0.87819 0.79502 0.79466 1.90207 1.73147 1.33282 1.52862 1.46110 1.06195 1.17842 1.57063 1.21912 0.96171 0.84412 0.98539 1.21075 0.91468 0.98088 1.01176 1.19894 0.94613 0.96216 1.07362 1.20104 0.90555 0.98404 0.95307 1.16821 0.85670 0.97068 1.10086 1.23711 0.95866 0.87554 0.96130 1.76075 0.98226 1.20779 1.20012 1.78828 1.12294 1.04757 1.09505 1.47666 1.11699 1.09674 1.38950 0.67467 1.74991 0.93433 1.23729 1.23679 1.20801 0.94969 0.94219 0.96466 1.20946 0.91747 1.01595 1.03464 1.18862 0.85518 0.93129 0.91274 0.90080 0.90275 0.90428 0.89758 0.89778 0.85272 0.85343 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.33 13.92 55.55 0.77 -20.56 16 2 C 0.10 2.80 5.52 -17.35 -0.10 2.70 16 3 Si 0.97 24.11 25.76 -169.99 -4.38 19.74 16 4 H -0.27 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.32 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.26 -6.89 6.82 56.52 0.39 -6.50 16 7 C -0.52 -13.77 9.32 -37.53 -0.35 -14.12 16 8 H 0.09 2.41 7.23 -52.49 -0.38 2.03 16 9 C 0.55 14.05 7.19 -14.92 -0.11 13.95 16 10 O -0.60 -16.60 10.61 5.12 0.05 -16.55 16 11 N -0.56 -12.01 3.11 -116.02 -0.36 -12.37 16 12 C 0.11 1.90 6.32 -3.65 -0.02 1.88 16 13 C -0.08 -1.10 6.94 -27.23 -0.19 -1.29 16 14 C -0.18 -2.89 6.22 -104.25 -0.65 -3.54 16 15 C -0.02 -0.34 9.70 -39.29 -0.38 -0.72 16 16 C -0.09 -1.42 5.88 -104.82 -0.62 -2.04 16 17 C 0.25 3.61 7.94 -156.25 -1.24 2.37 16 18 N -0.28 -4.01 12.24 32.15 0.39 -3.62 16 19 N -0.06 -0.71 13.47 60.35 0.81 0.10 16 20 N -0.23 -2.26 7.90 60.35 0.48 -1.78 16 21 H 0.47 2.09 8.96 -340.35 -3.05 -0.96 16 22 N -0.31 -3.93 12.09 32.16 0.39 -3.54 16 23 C -0.04 -0.71 9.68 -39.39 -0.38 -1.09 16 24 C -0.16 -3.02 9.44 -39.20 -0.37 -3.39 16 25 C 0.22 4.28 6.62 -83.59 -0.55 3.72 16 26 H 0.29 6.99 8.29 -40.82 -0.34 6.66 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.13 1.71 7.89 -52.49 -0.41 1.30 16 32 H 0.13 1.87 7.89 -52.48 -0.41 1.45 16 33 H 0.15 3.16 6.25 -52.49 -0.33 2.83 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -31.89 289.74 -7.85 -39.74 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.42 Total: -3.97 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -4.96 Total: -1.57 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 2.48 Total: -41.76 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.05 Total: -16.55 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.38 Total: 19.74 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.89 -7.85 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592672136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.330 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds