Wall clock time and date at job start Fri Apr 10 2020 15:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47420 * 264.70989 * 3 2 1 5 5 H 1.48509 * 109.46939 * 24.70985 * 3 2 1 6 6 H 1.48497 * 109.47189 * 144.70969 * 3 2 1 7 7 C 1.40134 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99903 * 349.14975 * 7 2 1 9 9 C 1.41758 * 120.00180 * 169.14146 * 7 2 1 10 10 O 1.21774 * 119.99471 * 344.70733 * 9 7 2 11 11 N 1.34774 * 119.99942 * 164.69853 * 9 7 2 12 12 C 1.46504 * 124.90649 * 354.95939 * 11 9 7 13 13 C 1.53741 * 105.21677 * 179.97438 * 12 11 9 14 14 C 1.51245 * 104.48279 * 359.97438 * 13 12 11 15 15 C 1.37827 * 130.92470 * 179.97438 * 14 13 12 16 16 C 1.39436 * 120.05445 * 179.23187 * 15 14 13 17 17 C 1.48346 * 120.19554 * 180.22964 * 16 15 14 18 18 N 1.34096 * 126.68026 * 0.12226 * 17 16 15 19 19 N 1.28990 * 107.25796 * 179.86810 * 18 17 16 20 20 N 1.28722 * 108.96378 * 0.39942 * 19 18 17 21 21 H 0.97003 * 125.33049 * 179.71926 * 20 19 18 22 22 N 1.28867 * 109.33641 * 359.74750 * 20 19 18 23 23 C 1.39507 * 119.60586 * 0.66484 * 16 15 14 24 24 C 1.37464 * 120.12532 * 359.58428 * 23 16 15 25 25 C 1.38933 * 108.47511 * 359.74009 * 14 13 12 26 26 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 27 27 H 1.09006 * 110.29237 * 298.93270 * 12 11 9 28 28 H 1.09000 * 110.29429 * 60.95897 * 12 11 9 29 29 H 1.09002 * 110.43438 * 118.74861 * 13 12 11 30 30 H 1.09003 * 110.43010 * 241.24612 * 13 12 11 31 31 H 1.07996 * 119.96802 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.93672 * 179.56845 * 23 16 15 33 33 H 1.07992 * 119.78884 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.5996 1.9820 -1.3940 5 1 1.3862 2.6824 0.5853 6 1 3.4774 1.4751 0.8088 7 6 2.0070 -1.2136 -0.0005 8 1 1.4815 -2.1406 0.1751 9 6 3.4055 -1.2245 -0.2318 10 8 3.9529 -0.2424 -0.6997 11 7 4.1293 -2.3216 0.0663 12 6 3.6036 -3.5186 0.7274 13 6 4.8016 -4.4754 0.8420 14 6 5.9511 -3.7189 0.2144 15 6 7.2711 -4.0710 0.0319 16 6 8.1481 -3.1897 -0.5992 17 6 9.5683 -3.5676 -0.8018 18 7 10.1511 -4.7184 -0.4356 19 7 11.3884 -4.6518 -0.7940 20 7 11.6004 -3.5133 -1.3559 21 1 12.4516 -3.2129 -1.7111 22 7 10.5049 -2.8348 -1.3721 23 6 7.6843 -1.9468 -1.0308 24 6 6.3681 -1.5980 -0.8419 25 6 5.4826 -2.4839 -0.2163 26 1 -0.4850 0.8400 -0.0004 27 1 3.2238 -3.2675 1.7179 28 1 2.8153 -3.9685 0.1239 29 1 5.0155 -4.6939 1.8882 30 1 4.6070 -5.3962 0.2921 31 1 7.6235 -5.0352 0.3672 32 1 8.3607 -1.2572 -1.5140 33 1 6.0150 -0.6343 -1.1778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592672136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:46 Heat of formation + Delta-G solvation = 86.578966 kcal Electronic energy + Delta-G solvation = -21217.955718 eV Core-core repulsion = 17859.240946 eV Total energy + Delta-G solvation = -3358.714772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.37450 -41.86316 -39.38574 -37.41415 -35.26590 -35.18943 -34.15350 -33.14603 -31.10065 -29.95118 -28.91905 -25.60508 -25.45188 -24.16379 -23.48687 -21.90443 -21.34767 -20.06753 -18.98995 -18.08550 -18.06445 -17.44112 -17.00661 -16.88059 -16.44495 -15.40634 -15.09392 -14.95845 -14.77771 -14.49121 -14.12028 -13.86366 -13.82180 -13.53209 -13.28306 -13.09888 -12.99384 -12.74611 -12.49752 -12.33967 -12.18462 -12.06670 -11.83013 -11.66531 -11.32997 -10.69554 -10.13385 -9.78052 -8.97732 -8.57245 -7.22729 -0.22608 0.23733 0.44632 1.18636 1.32956 1.38861 1.49001 1.52006 1.99194 2.18527 2.46827 2.75450 2.81867 3.20637 3.27386 3.66531 3.76493 4.10196 4.17724 4.30819 4.33777 4.42664 4.53871 4.61591 4.80158 4.90925 5.01559 5.12403 5.13627 5.29413 5.44853 5.52458 5.60131 5.64429 5.68218 5.96510 6.20163 6.43142 6.93897 7.18909 7.78776 8.06349 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.032333 B = 0.004056 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.784319 B = 6901.354489 C = 7687.351847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.078 3.922 3 Si 1.012 2.988 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.537 4.537 8 H 0.088 0.912 9 C 0.545 3.455 10 O -0.631 6.631 11 N -0.569 5.569 12 C 0.104 3.896 13 C -0.069 4.069 14 C -0.159 4.159 15 C -0.018 4.018 16 C -0.077 4.077 17 C 0.229 3.771 18 N -0.292 5.292 19 N -0.056 5.056 20 N -0.202 5.202 21 H 0.493 0.507 22 N -0.306 5.306 23 C -0.041 4.041 24 C -0.175 4.175 25 C 0.170 3.830 26 H 0.300 0.700 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.116 -9.171 0.502 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.143 4.143 3 Si 0.844 3.156 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.571 4.571 8 H 0.106 0.894 9 C 0.360 3.640 10 O -0.526 6.526 11 N -0.287 5.287 12 C -0.018 4.018 13 C -0.105 4.105 14 C -0.163 4.163 15 C -0.039 4.039 16 C -0.082 4.082 17 C -0.050 4.050 18 N -0.165 5.165 19 N -0.051 5.051 20 N -0.053 5.053 21 H 0.352 0.648 22 N -0.158 5.158 23 C -0.062 4.062 24 C -0.196 4.196 25 C 0.069 3.931 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.174 0.826 32 H 0.161 0.839 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.477 -8.997 0.343 19.660 hybrid contribution -0.047 1.504 -0.485 1.581 sum 17.430 -7.493 -0.142 18.972 Atomic orbital electron populations 1.69509 1.08426 1.31974 1.35084 1.26363 0.95345 1.03832 0.88718 0.84557 0.76391 0.76020 0.78650 1.21584 1.22013 1.21559 1.20074 0.90839 0.96690 1.49521 0.89397 1.16906 0.87926 0.80357 0.78849 1.90177 1.73753 1.34846 1.53847 1.45885 1.07104 1.18047 1.57652 1.22193 0.97836 0.83577 0.98186 1.21165 0.88440 0.97670 1.03261 1.20185 0.95611 0.94794 1.05709 1.20364 0.89740 0.99252 0.94548 1.16969 0.86573 0.96371 1.08314 1.23504 0.95686 0.88259 0.97583 1.76060 0.98940 1.20832 1.20662 1.78789 1.11497 1.05257 1.09584 1.47728 1.11950 1.08579 1.37047 0.64785 1.74954 0.93933 1.23878 1.23069 1.20830 0.93837 0.95069 0.96421 1.20828 0.93241 1.00778 1.04776 1.19157 0.84938 0.95161 0.93807 0.88963 0.90091 0.90312 0.86720 0.86764 0.82554 0.83941 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.00 13.92 21.85 0.30 -43.70 16 2 C 0.08 4.25 5.52 85.33 0.47 4.72 16 3 Si 1.01 50.88 25.76 68.60 1.77 52.65 16 4 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.29 -15.55 6.82 99.48 0.68 -14.87 16 7 C -0.54 -29.44 9.32 23.60 0.22 -29.22 16 8 H 0.09 4.75 7.23 -2.91 -0.02 4.73 16 9 C 0.55 29.06 7.19 85.11 0.61 29.67 16 10 O -0.63 -36.41 10.61 -4.59 -0.05 -36.46 16 11 N -0.57 -25.07 3.11 -639.17 -1.99 -27.05 16 12 C 0.10 3.42 6.32 86.63 0.55 3.97 16 13 C -0.07 -1.66 6.94 30.27 0.21 -1.45 16 14 C -0.16 -4.87 6.22 -19.62 -0.12 -4.99 16 15 C -0.02 -0.50 9.70 22.46 0.22 -0.29 16 16 C -0.08 -2.25 5.88 -19.99 -0.12 -2.36 16 17 C 0.23 6.07 7.94 137.31 1.09 7.16 16 18 N -0.29 -7.52 12.24 -52.20 -0.64 -8.16 16 19 N -0.06 -1.18 13.47 37.02 0.50 -0.68 16 20 N -0.20 -3.20 7.90 37.02 0.29 -2.91 16 21 H 0.49 2.56 8.96 -347.52 -3.12 -0.55 16 22 N -0.31 -6.93 12.09 -52.15 -0.63 -7.56 16 23 C -0.04 -1.31 9.68 22.39 0.22 -1.10 16 24 C -0.17 -6.95 9.44 22.52 0.21 -6.73 16 25 C 0.17 6.78 6.62 38.57 0.26 7.04 16 26 H 0.30 14.49 8.29 -92.71 -0.77 13.72 16 27 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.08 2.53 7.91 -2.39 -0.02 2.51 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.16 3.46 7.89 -2.91 -0.02 3.44 16 32 H 0.14 4.05 7.89 -2.91 -0.02 4.02 16 33 H 0.12 5.32 6.25 -2.91 -0.02 5.30 16 Total: -1.00 -70.59 289.74 1.42 -69.18 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -1.95 Total: -1.72 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 3.81 Total: 6.42 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -2.16 Total: -90.06 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.05 Total: -36.46 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 1.77 Total: 52.65 kcal Total: -70.59 1.42 -69.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592672136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.754 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds