Wall clock time and date at job start Fri Apr 10 2020 15:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81390 * 103.00252 * 2 1 4 4 C 1.53003 * 109.47465 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47359 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47056 * 54.99923 * 5 4 3 7 7 O 1.42903 * 109.47083 * 295.00065 * 5 4 3 8 8 C 1.50705 * 109.47092 * 175.00058 * 5 4 3 9 9 O 1.21299 * 119.99726 * 115.00345 * 8 5 4 10 10 N 1.34777 * 119.99695 * 294.99476 * 8 5 4 11 11 C 1.40597 * 119.99674 * 179.97438 * 10 8 5 12 12 C 1.40648 * 126.08199 * 359.97438 * 11 10 8 13 13 N 1.30907 * 108.38289 * 179.77574 * 12 11 10 14 14 N 1.40067 * 108.41135 * 0.38341 * 13 12 11 15 15 C 1.37320 * 126.07294 * 179.87911 * 14 13 12 16 16 H 1.08002 * 120.00430 * 179.69232 * 15 14 13 17 17 C 1.38992 * 119.99664 * 359.41108 * 15 14 13 18 18 N 1.31294 * 120.00157 * 0.27652 * 17 15 14 19 19 Si 1.86803 * 119.99838 * 180.27798 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00076 * 19 17 15 21 21 H 1.48501 * 109.47062 * 210.00027 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99826 * 19 17 15 23 23 C 1.35682 * 126.07675 * 180.02562 * 11 10 8 24 24 H 1.09001 * 109.46692 * 300.00146 * 1 2 3 25 25 H 1.08996 * 109.46761 * 60.00142 * 1 2 3 26 26 H 1.08996 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47443 * 59.99632 * 3 2 1 28 28 H 1.09005 * 109.47044 * 300.00123 * 3 2 1 29 29 H 1.08994 * 109.46764 * 59.99783 * 4 3 2 30 30 H 1.09000 * 109.46570 * 300.00088 * 4 3 2 31 31 H 0.96703 * 113.99623 * 299.99648 * 7 5 4 32 32 H 0.96997 * 119.99849 * 0.02562 * 10 8 5 33 33 H 1.08000 * 125.80726 * 0.02562 * 12 11 10 34 34 H 0.96996 * 120.00263 * 179.97438 * 18 17 15 35 35 H 1.07994 * 126.25033 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7425 1.9399 -0.0006 5 6 4.0867 3.4306 0.0000 6 1 3.5944 3.9167 0.8423 7 8 3.6384 4.0235 -1.2205 8 6 5.5789 3.6015 0.1232 9 8 6.2103 4.0932 -0.7884 10 7 6.2118 3.2082 1.2463 11 6 7.6040 3.3672 1.3610 12 6 8.4578 3.9176 0.3882 13 7 9.6803 3.9031 0.8561 14 7 9.6570 3.3372 2.1372 15 6 10.7424 3.1448 2.9559 16 1 10.6108 2.7016 3.9320 17 6 12.0114 3.5149 2.5262 18 7 12.1714 4.0536 1.3396 19 14 13.4890 3.2460 3.6369 20 1 14.0647 1.9018 3.3781 21 1 14.5130 4.2849 3.3586 22 1 13.0641 3.3376 5.0569 23 6 8.3629 3.0160 2.4294 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2370 -0.8900 29 1 4.1609 1.4703 -0.8908 30 1 4.1617 1.4701 0.8891 31 1 4.0362 3.6391 -2.0138 32 1 5.7068 2.8148 1.9750 33 1 8.1556 4.2925 -0.5785 34 1 13.0569 4.3123 1.0398 35 1 8.0081 2.5642 3.3439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631317140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:07 Heat of formation + Delta-G solvation = -9.807403 kcal Electronic energy + Delta-G solvation = -19609.810345 eV Core-core repulsion = 16350.067146 eV Total energy + Delta-G solvation = -3259.743198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13713 -39.04058 -36.70574 -34.37986 -33.40126 -32.81524 -30.28261 -29.34639 -28.43528 -26.82444 -24.73820 -22.62469 -21.11976 -20.49833 -19.45871 -17.85646 -17.25932 -16.57549 -16.19053 -15.87280 -15.46695 -15.11939 -14.71228 -14.33380 -14.03176 -13.89118 -13.64099 -13.42685 -13.23992 -13.01029 -12.92007 -12.13398 -11.82338 -11.63751 -11.53784 -11.42928 -11.26763 -10.97871 -10.69094 -10.54320 -10.27554 -10.19466 -9.18769 -9.07718 -8.81512 -8.07808 -7.98598 -6.73204 -6.56866 -4.24331 1.33887 2.27996 2.73186 3.00285 3.04266 3.09665 3.48279 3.64730 3.85437 4.15371 4.38664 4.51307 4.63653 4.70448 4.78762 4.81337 4.83119 5.01062 5.07988 5.15658 5.30685 5.36124 5.64878 5.76247 6.22424 6.42229 6.86016 6.93188 7.07185 7.21854 7.43621 7.84281 8.12186 8.25310 8.58898 8.78545 9.36245 9.65251 10.39148 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032786 B = 0.003007 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.811757 B = 9308.781493 C = 9942.384807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.078 4.078 4 C -0.133 4.133 5 C 0.104 3.896 6 H 0.122 0.878 7 O -0.539 6.539 8 C 0.469 3.531 9 O -0.528 6.528 10 N -0.618 5.618 11 C -0.063 4.063 12 C -0.033 4.033 13 N -0.260 5.260 14 N -0.142 5.142 15 C -0.323 4.323 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.935 3.065 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.083 4.083 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.385 0.615 32 H 0.397 0.603 33 H 0.175 0.825 34 H 0.275 0.725 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.699 -5.870 0.642 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.226 4.226 4 C -0.172 4.172 5 C 0.039 3.961 6 H 0.140 0.860 7 O -0.344 6.344 8 C 0.254 3.746 9 O -0.405 6.405 10 N -0.262 5.262 11 C -0.169 4.169 12 C -0.208 4.208 13 N -0.092 5.092 14 N 0.091 4.909 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.396 5.396 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.234 4.234 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.230 0.770 33 H 0.192 0.808 34 H 0.086 0.914 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.551 -5.645 -0.017 17.488 hybrid contribution -1.045 0.069 0.816 1.328 sum -17.597 -5.576 0.799 18.476 Atomic orbital electron populations 1.23367 0.94226 1.06460 1.04926 1.87053 1.07307 1.11681 1.98104 1.23349 0.99589 0.93926 1.05768 1.22019 0.93788 0.96074 1.05298 1.21748 0.91300 0.93038 0.90001 0.86041 1.86540 1.68408 1.64197 1.15281 1.21161 0.90118 0.80290 0.83079 1.90623 1.66684 1.43910 1.39264 1.42552 1.06358 1.59817 1.17460 1.17283 0.82186 1.18812 0.98582 1.24100 0.90144 1.05882 1.00686 1.78260 1.17787 1.20209 0.92906 1.44560 1.03566 1.32662 1.10142 1.19880 0.83810 1.43190 0.98658 0.86588 1.25652 0.99531 0.95388 0.96568 1.70214 1.23963 1.29345 1.16091 0.85823 0.79802 0.78685 0.79811 1.19569 1.20073 1.18795 1.21269 0.85880 1.15765 1.00512 0.90493 0.90474 0.88148 0.89783 0.89108 0.89738 0.89321 0.76612 0.76992 0.80805 0.91430 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.76 101.05 1.09 0.34 16 2 S -0.27 -2.49 22.38 -107.50 -2.41 -4.89 16 3 C -0.08 -0.64 5.84 37.16 0.22 -0.42 16 4 C -0.13 -1.25 4.87 -26.73 -0.13 -1.38 16 5 C 0.10 1.18 3.38 -27.88 -0.09 1.08 16 6 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 7 O -0.54 -6.54 12.53 -55.09 -0.69 -7.23 16 8 C 0.47 7.76 7.14 -10.98 -0.08 7.68 16 9 O -0.53 -11.05 13.48 -14.32 -0.19 -11.24 16 10 N -0.62 -10.49 5.37 -10.00 -0.05 -10.54 16 11 C -0.06 -1.44 6.90 -83.84 -0.58 -2.02 16 12 C -0.03 -0.86 10.85 -17.04 -0.18 -1.05 16 13 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 14 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 15 C -0.32 -8.54 10.25 -14.81 -0.15 -8.69 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.57 11.81 55.50 0.66 -20.92 16 19 Si 0.93 18.90 29.55 -169.99 -5.02 13.88 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 24 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.09 0.74 7.82 -51.92 -0.41 0.33 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.81 7.77 -51.93 -0.40 0.41 16 31 H 0.38 4.01 8.79 45.56 0.40 4.41 16 32 H 0.40 5.06 8.53 -40.82 -0.35 4.71 16 33 H 0.18 4.57 5.92 -52.49 -0.31 4.25 16 34 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -34.32 319.42 -6.39 -40.71 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -3.57 Total: 12.15 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.51 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.88 Total: -42.68 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.88 Total: -18.47 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.41 Total: -4.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.32 -6.39 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631317140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.906 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds