Wall clock time and date at job start Fri Apr 10 2020 15:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45204 * 109.46948 * 2 1 4 4 C 1.34817 * 117.00151 * 180.02562 * 3 2 1 5 5 O 1.21541 * 120.00077 * 359.97438 * 4 3 2 6 6 C 1.47103 * 120.00123 * 179.97438 * 4 3 2 7 7 N 1.30605 * 125.54418 * 179.97438 * 6 4 3 8 8 C 1.30642 * 115.91280 * 180.02562 * 7 6 4 9 9 C 1.50698 * 122.10986 * 180.02562 * 8 7 6 10 10 S 1.81394 * 109.47378 * 89.97394 * 9 8 7 11 11 C 1.81402 * 103.00060 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47316 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99857 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00284 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99621 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47203 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47050 * 119.99905 * 16 14 12 19 19 H 1.48498 * 109.47287 * 239.99705 * 16 14 12 20 20 C 1.34298 * 115.78205 * 359.97438 * 8 7 6 21 21 S 1.71068 * 109.08879 * 0.02562 * 20 8 7 22 22 H 1.08999 * 109.46823 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47124 * 299.99633 * 1 2 3 24 24 H 1.08992 * 109.47214 * 60.00291 * 1 2 3 25 25 H 1.08995 * 109.47124 * 240.00367 * 2 1 3 26 26 H 1.08992 * 109.47214 * 119.99709 * 2 1 3 27 27 H 1.09002 * 109.47132 * 209.97270 * 9 8 7 28 28 H 1.08998 * 109.47376 * 329.96815 * 9 8 7 29 29 H 1.08998 * 109.47561 * 299.99789 * 11 10 9 30 30 H 1.09001 * 109.47243 * 59.99779 * 11 10 9 31 31 H 0.96999 * 120.00323 * 180.02562 * 15 14 12 32 32 H 1.08002 * 125.45448 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5457 -0.0005 5 8 4.0910 0.5819 -0.0005 6 6 3.9128 2.9051 -0.0011 7 7 5.1849 3.2005 -0.0012 8 6 5.4752 4.4743 -0.0013 9 6 6.8977 4.9717 -0.0019 10 16 7.4680 5.1707 -1.7124 11 6 9.1698 5.7649 -1.5086 12 6 9.7920 5.9814 -2.8641 13 1 9.2209 5.7811 -3.7586 14 6 11.0906 6.4341 -2.9621 15 7 11.7861 6.6776 -1.8729 16 14 11.8620 6.7017 -4.6422 17 1 10.8774 6.3582 -5.6994 18 1 12.2616 8.1251 -4.7824 19 1 13.0601 5.8354 -4.7805 20 6 4.4259 5.3125 -0.0018 21 16 2.9798 4.3987 -0.0015 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8899 27 1 6.9472 5.9319 0.5115 28 1 7.5346 4.2518 0.5120 29 1 9.1628 6.7052 -0.9574 30 1 9.7495 5.0247 -0.9571 31 1 12.6996 6.9964 -1.9419 32 1 4.4856 6.3909 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562721112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:04:03 Heat of formation + Delta-G solvation = -47.055167 kcal Electronic energy + Delta-G solvation = -16885.912049 eV Core-core repulsion = 13871.869213 eV Total energy + Delta-G solvation = -3014.042835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.044 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77681 -39.79077 -36.82596 -33.14975 -32.45468 -31.80100 -28.60696 -27.99042 -26.92377 -23.56737 -23.03600 -21.70858 -19.68539 -18.99474 -17.37445 -16.97837 -16.87664 -16.51516 -15.56411 -15.07889 -14.64935 -14.48450 -14.01264 -13.72180 -13.46888 -13.25494 -13.10563 -12.56804 -12.39904 -12.27359 -12.04443 -11.99819 -11.53498 -11.08718 -10.90779 -10.89298 -10.71312 -10.19520 -9.95861 -9.86573 -9.59046 -8.97727 -8.70926 -8.62069 -6.70824 -6.19642 -4.23709 -0.03196 0.96820 1.43134 1.77338 1.98271 2.48975 3.18135 3.25545 3.32828 3.39619 3.81100 4.12747 4.35915 4.53263 4.55524 4.60317 4.89420 4.95560 5.07538 5.17725 5.27494 5.38435 5.52046 5.56711 5.70211 5.96464 6.00752 7.07775 7.11139 7.25748 7.53523 7.75176 8.00413 8.78263 9.39371 10.91707 Molecular weight = 287.04amu Principal moments of inertia in cm(-1) A = 0.033641 B = 0.002933 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.122954 B = 9542.641352 C = 9892.042601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.353 6.353 4 C 0.550 3.450 5 O -0.467 6.467 6 C -0.013 4.013 7 N -0.371 5.371 8 C 0.087 3.913 9 C -0.025 4.025 10 S -0.287 6.287 11 C 0.089 3.911 12 C -0.511 4.511 13 H 0.068 0.932 14 C 0.065 3.935 15 N -0.893 5.893 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.241 4.241 21 S 0.226 5.774 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.450 -6.832 6.976 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.270 6.270 4 C 0.388 3.612 5 O -0.351 6.351 6 C -0.285 4.285 7 N -0.090 5.090 8 C -0.051 4.051 9 C -0.176 4.176 10 S -0.060 6.060 11 C -0.057 4.057 12 C -0.550 4.550 13 H 0.086 0.914 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.385 4.385 21 S 0.481 5.519 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.352 -7.547 6.119 26.219 hybrid contribution 2.256 0.662 0.293 2.369 sum -22.096 -6.885 6.413 24.016 Atomic orbital electron populations 1.21825 0.92133 1.03244 1.03769 1.23151 0.95499 0.78963 1.03252 1.86511 1.22332 1.33458 1.84680 1.19150 0.81058 0.86805 0.74147 1.90929 1.60290 1.40615 1.43269 1.25698 0.91998 0.95841 1.14955 1.66350 1.15066 1.18688 1.08909 1.19600 0.96896 0.85962 1.02683 1.21775 0.91480 1.03547 1.00751 1.86859 1.23258 1.88820 1.07063 1.21107 0.84963 0.98291 1.01386 1.20699 0.97762 1.45509 0.91063 0.91419 1.24961 0.96534 0.94907 0.97479 1.69957 1.10453 1.44952 1.27724 0.86290 0.79175 0.77867 0.83302 1.19417 1.20731 1.20695 1.26783 0.96251 1.07103 1.08325 1.83775 1.08118 0.97281 1.62768 0.89891 0.91298 0.91226 0.90636 0.90713 0.88788 0.88677 0.94447 0.94384 0.92532 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.76 10.09 -40.81 -0.41 -4.17 16 4 C 0.55 7.66 7.95 34.33 0.27 7.93 16 5 O -0.47 -7.86 16.86 -19.30 -0.33 -8.18 16 6 C -0.01 -0.18 7.46 -14.48 -0.11 -0.29 16 7 N -0.37 -6.40 10.56 -7.72 -0.08 -6.48 16 8 C 0.09 1.38 5.94 -84.49 -0.50 0.88 16 9 C -0.03 -0.45 6.33 36.00 0.23 -0.22 16 10 S -0.29 -6.39 21.64 -107.50 -2.33 -8.72 16 11 C 0.09 2.33 5.70 36.01 0.21 2.54 16 12 C -0.51 -14.54 9.13 -34.44 -0.31 -14.85 16 13 H 0.07 1.94 7.71 -52.49 -0.40 1.53 16 14 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 16 Si 0.91 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.24 -2.96 10.83 29.34 0.32 -2.64 16 21 S 0.23 2.35 23.06 -107.50 -2.48 -0.13 16 22 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.43 8.11 -51.92 -0.42 1.01 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.04 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -32.92 318.97 -8.25 -41.18 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -3.77 Total: -4.99 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 0.62 Total: -4.53 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.65 Total: -31.79 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.74 Total: -12.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -4.81 Total: -8.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.92 -8.25 -41.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562721112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.880 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds