Wall clock time and date at job start Fri Apr 10 2020 15:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45204 * 109.46948 * 2 1 4 4 C 1.34817 * 117.00151 * 180.02562 * 3 2 1 5 5 O 1.21541 * 120.00077 * 359.97438 * 4 3 2 6 6 C 1.47103 * 120.00123 * 179.97438 * 4 3 2 7 7 N 1.30605 * 125.54418 * 179.97438 * 6 4 3 8 8 C 1.30642 * 115.91280 * 180.02562 * 7 6 4 9 9 C 1.50698 * 122.10986 * 180.02562 * 8 7 6 10 10 S 1.81394 * 109.47378 * 89.97394 * 9 8 7 11 11 C 1.81402 * 103.00060 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47316 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99857 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00284 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99621 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47203 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47050 * 119.99905 * 16 14 12 19 19 H 1.48498 * 109.47287 * 239.99705 * 16 14 12 20 20 C 1.34298 * 115.78205 * 359.97438 * 8 7 6 21 21 S 1.71068 * 109.08879 * 0.02562 * 20 8 7 22 22 H 1.08999 * 109.46823 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47124 * 299.99633 * 1 2 3 24 24 H 1.08992 * 109.47214 * 60.00291 * 1 2 3 25 25 H 1.08995 * 109.47124 * 240.00367 * 2 1 3 26 26 H 1.08992 * 109.47214 * 119.99709 * 2 1 3 27 27 H 1.09002 * 109.47132 * 209.97270 * 9 8 7 28 28 H 1.08998 * 109.47376 * 329.96815 * 9 8 7 29 29 H 1.08998 * 109.47561 * 299.99789 * 11 10 9 30 30 H 1.09001 * 109.47243 * 59.99779 * 11 10 9 31 31 H 0.96999 * 120.00323 * 180.02562 * 15 14 12 32 32 H 1.08002 * 125.45448 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5457 -0.0005 5 8 4.0910 0.5819 -0.0005 6 6 3.9128 2.9051 -0.0011 7 7 5.1849 3.2005 -0.0012 8 6 5.4752 4.4743 -0.0013 9 6 6.8977 4.9717 -0.0019 10 16 7.4680 5.1707 -1.7124 11 6 9.1698 5.7649 -1.5086 12 6 9.7920 5.9814 -2.8641 13 1 9.2209 5.7811 -3.7586 14 6 11.0906 6.4341 -2.9621 15 7 11.7861 6.6776 -1.8729 16 14 11.8620 6.7017 -4.6422 17 1 10.8774 6.3582 -5.6994 18 1 12.2616 8.1251 -4.7824 19 1 13.0601 5.8354 -4.7805 20 6 4.4259 5.3125 -0.0018 21 16 2.9798 4.3987 -0.0015 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8899 27 1 6.9472 5.9319 0.5115 28 1 7.5346 4.2518 0.5120 29 1 9.1628 6.7052 -0.9574 30 1 9.7495 5.0247 -0.9571 31 1 12.6996 6.9964 -1.9419 32 1 4.4856 6.3909 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562721112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:04:03 Heat of formation + Delta-G solvation = -67.651594 kcal Electronic energy + Delta-G solvation = -16886.805177 eV Core-core repulsion = 13871.869213 eV Total energy + Delta-G solvation = -3014.935964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79314 -40.84486 -37.80219 -35.30504 -33.44464 -32.55819 -30.70458 -29.23825 -27.95085 -25.25747 -24.14187 -22.69719 -20.73708 -20.03223 -18.64617 -18.35704 -17.89413 -17.87269 -17.24364 -16.59442 -15.94789 -15.59312 -15.09227 -14.92844 -14.74176 -14.48615 -14.42176 -14.16528 -13.81990 -13.61410 -13.02273 -12.80947 -12.73205 -12.57630 -12.47223 -12.17149 -12.13354 -11.61725 -11.58922 -11.00176 -10.85998 -10.80234 -10.76106 -9.86839 -8.51213 -8.34426 -6.47534 -1.04499 0.00348 0.39498 0.50753 1.08047 1.20925 1.39130 1.39956 1.54322 1.88850 2.04323 2.36229 3.00155 3.13138 3.54535 3.82937 4.00568 4.04242 4.09053 4.30469 4.34388 4.45269 4.71596 4.74555 4.93713 4.94011 4.95158 5.04194 5.32822 5.55985 5.87269 6.24466 6.52651 6.59584 7.20393 8.77724 Molecular weight = 287.04amu Principal moments of inertia in cm(-1) A = 0.033641 B = 0.002933 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.122954 B = 9542.641352 C = 9892.042601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.344 6.344 4 C 0.553 3.447 5 O -0.509 6.509 6 C -0.053 4.053 7 N -0.418 5.418 8 C 0.054 3.946 9 C -0.009 4.009 10 S -0.303 6.303 11 C 0.093 3.907 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.015 3.985 15 N -0.924 5.924 16 Si 0.977 3.023 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.274 1.274 20 C -0.232 4.232 21 S 0.351 5.649 22 H 0.104 0.896 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.012 0.988 31 H 0.271 0.729 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.021 -5.916 6.639 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.260 6.260 4 C 0.394 3.606 5 O -0.396 6.396 6 C -0.324 4.324 7 N -0.138 5.138 8 C -0.085 4.085 9 C -0.159 4.159 10 S -0.075 6.075 11 C -0.054 4.054 12 C -0.575 4.575 13 H 0.078 0.922 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.800 3.200 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.199 1.199 20 C -0.376 4.376 21 S 0.605 5.395 22 H 0.122 0.878 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -26.963 -6.636 5.786 28.364 hybrid contribution 2.806 0.371 0.500 2.874 sum -24.157 -6.265 6.285 25.736 Atomic orbital electron populations 1.21857 0.89386 1.04776 1.04185 1.23526 0.97505 0.77629 1.03279 1.86514 1.20324 1.35239 1.83894 1.19303 0.81744 0.86496 0.73082 1.90896 1.61379 1.41928 1.45445 1.25819 0.92416 0.97821 1.16305 1.66248 1.17307 1.19858 1.10393 1.19332 0.96473 0.86433 1.06218 1.21738 0.92823 1.04655 0.96722 1.86654 1.20185 1.88499 1.12175 1.20776 0.87603 0.96959 1.00065 1.20996 0.98593 1.46202 0.91666 0.92169 1.25904 0.96913 0.94201 1.01592 1.70054 1.10974 1.45304 1.29959 0.85221 0.78163 0.78332 0.78275 1.19070 1.19436 1.19926 1.27272 0.96724 1.08679 1.04931 1.83350 1.04536 0.92789 1.58800 0.87799 0.90696 0.90918 0.90926 0.90601 0.86385 0.89932 0.95731 0.96964 0.92018 0.76138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 71.98 0.74 -0.33 16 2 C 0.05 0.78 6.20 71.98 0.45 1.23 16 3 O -0.34 -6.87 10.09 -57.30 -0.58 -7.45 16 4 C 0.55 15.35 7.95 70.15 0.56 15.91 16 5 O -0.51 -17.73 16.86 19.70 0.33 -17.40 16 6 C -0.05 -1.48 7.46 87.20 0.65 -0.83 16 7 N -0.42 -14.45 10.56 -178.35 -1.88 -16.33 16 8 C 0.05 1.67 5.94 41.83 0.25 1.92 16 9 C -0.01 -0.33 6.33 71.24 0.45 0.12 16 10 S -0.30 -13.71 21.64 -56.49 -1.22 -14.93 16 11 C 0.09 5.06 5.70 71.24 0.41 5.47 16 12 C -0.54 -31.23 9.13 25.60 0.23 -30.99 16 13 H 0.06 3.52 7.71 -2.91 -0.02 3.50 16 14 C 0.01 0.84 5.46 84.66 0.46 1.30 16 15 N -0.92 -54.79 13.29 21.45 0.28 -54.51 16 16 Si 0.98 44.32 29.54 68.60 2.03 46.34 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.23 -4.98 10.83 66.92 0.72 -4.25 16 21 S 0.35 6.04 23.06 -56.49 -1.30 4.74 16 22 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.12 3.50 8.11 -2.39 -0.02 3.48 16 28 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.22 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -74.18 318.97 3.71 -70.48 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: 1.13 Total: -0.48 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.92 Total: -10.46 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.60 Total: -70.84 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.25 Total: -24.85 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -2.53 Total: -10.19 kcal Total: -74.18 3.71 -70.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562721112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.824 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds