Wall clock time and date at job start Fri Apr 10 2020 15:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46864 * 2 1 4 4 C 1.46899 * 111.00466 * 287.93510 * 3 2 1 5 5 C 1.50697 * 109.46812 * 160.36245 * 4 3 2 6 6 H 1.07995 * 120.00821 * 4.67228 * 5 4 3 7 7 C 1.37884 * 119.99490 * 184.66981 * 5 4 3 8 8 N 1.31508 * 120.00145 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99699 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47113 * 60.00497 * 9 7 5 11 11 H 1.48504 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47317 * 299.99984 * 9 7 5 13 13 C 1.46902 * 110.99724 * 163.97719 * 3 2 1 14 14 C 1.50701 * 109.47673 * 293.95943 * 13 3 2 15 15 N 1.30474 * 125.64094 * 274.97611 * 14 13 3 16 16 C 1.34160 * 109.26456 * 179.75192 * 15 14 13 17 17 C 1.34761 * 108.01561 * 0.42949 * 16 15 14 18 18 Br 1.89100 * 126.59892 * 179.83689 * 17 16 15 19 19 N 1.35124 * 125.64264 * 94.99512 * 14 13 3 20 20 H 0.96998 * 126.40409 * 0.02562 * 19 14 13 21 21 H 1.09003 * 109.47187 * 179.27379 * 1 2 3 22 22 H 1.08996 * 109.47030 * 299.27465 * 1 2 3 23 23 H 1.08999 * 109.46970 * 59.27654 * 1 2 3 24 24 H 1.09002 * 109.46935 * 240.00637 * 2 1 3 25 25 H 1.08991 * 109.47271 * 120.00465 * 2 1 3 26 26 H 1.08994 * 109.46723 * 280.36196 * 4 3 2 27 27 H 1.08999 * 109.46746 * 40.36169 * 4 3 2 28 28 H 0.97003 * 120.00338 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47158 * 173.95408 * 13 3 2 30 30 H 1.09005 * 109.46781 * 53.96006 * 13 3 2 31 31 H 1.07998 * 125.99273 * 180.27347 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7970 2.0222 -1.3047 5 6 1.8482 3.5201 -1.1474 6 1 2.1025 3.9544 -0.1920 7 6 1.5702 4.3361 -2.2236 8 7 1.2600 3.8073 -3.3870 9 14 1.6330 6.1928 -2.0285 10 1 2.9987 6.6009 -1.6121 11 1 1.2960 6.8382 -3.3228 12 1 0.6535 6.6154 -0.9954 13 6 3.4379 1.4420 0.3786 14 6 3.5930 1.0068 1.8130 15 7 3.4556 1.7741 2.8593 16 6 3.6596 1.0491 3.9696 17 6 3.9433 -0.2143 3.5963 18 35 4.3237 -1.6700 4.7417 19 7 3.8976 -0.2424 2.2284 20 1 4.0550 -1.0147 1.6630 21 1 -0.3634 -1.0276 -0.0130 22 1 -0.3633 0.5025 0.8964 23 1 -0.3633 0.5250 -0.8834 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.5719 1.7033 -2.0017 27 1 0.8198 1.7304 -1.6895 28 1 1.0649 4.3813 -4.1442 29 1 3.8030 2.4629 0.2671 30 1 4.0131 0.7779 -0.2668 31 1 3.6082 1.4146 4.9846 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891577290.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:05 Heat of formation + Delta-G solvation = 43.274234 kcal Electronic energy + Delta-G solvation = -15265.608076 eV Core-core repulsion = 12628.550705 eV Total energy + Delta-G solvation = -2637.057371 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 287.033 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.20813 -38.62844 -34.75154 -33.85405 -33.07582 -32.02198 -30.53658 -28.45758 -26.23550 -24.46453 -22.52987 -22.28413 -21.25927 -18.88462 -18.55219 -17.02479 -16.57204 -16.09478 -15.61358 -15.45891 -14.97295 -14.87180 -14.41016 -14.01051 -13.42174 -13.21080 -12.92554 -12.63623 -12.61586 -12.39703 -12.11592 -12.10245 -11.89800 -11.61620 -11.31146 -11.13905 -10.96069 -10.54991 -9.42835 -9.04551 -8.15719 -6.23895 0.12824 0.67669 1.44696 1.47039 1.55012 1.92202 2.13719 2.44959 3.15976 3.31163 3.42272 3.95814 4.10859 4.21969 4.31881 4.49824 4.59341 4.71860 4.74018 4.90217 4.99046 5.22005 5.26744 5.34454 5.48018 5.71362 6.09837 6.14280 6.32257 6.58656 6.90656 6.95261 7.45076 8.94109 Molecular weight = 287.03amu Principal moments of inertia in cm(-1) A = 0.035107 B = 0.003987 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.366468 B = 7020.994892 C = 7538.812635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 N -0.539 5.539 4 C 0.210 3.790 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.145 3.855 14 C 0.252 3.748 15 N -0.504 5.504 16 C 0.012 3.988 17 C -0.041 4.041 18 Br 0.040 6.960 19 N -0.541 5.541 20 H 0.433 0.567 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.071 0.929 26 H -0.027 1.027 27 H 0.020 0.980 28 H 0.264 0.736 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -14.634 15.158 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 N -0.265 5.265 4 C 0.084 3.916 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.016 3.984 14 C -0.014 4.014 15 N -0.224 5.224 16 C -0.140 4.140 17 C -0.235 4.235 18 Br 0.123 6.877 19 N -0.148 5.148 20 H 0.274 0.726 21 H 0.098 0.902 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.090 0.910 26 H -0.009 1.009 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.689 -14.013 15.739 22.110 hybrid contribution 0.488 -0.303 -1.321 1.441 sum 7.177 -14.316 14.418 21.549 Atomic orbital electron populations 1.21686 0.94771 1.01686 1.01383 1.22137 0.96971 0.89064 0.99762 1.61981 1.15651 1.16480 1.32402 1.19430 0.94895 0.93604 0.83635 1.21437 1.46138 0.92087 0.96175 0.92446 1.25755 0.94949 1.03492 0.94828 1.70043 1.48534 1.36991 1.01719 0.85566 0.78906 0.79769 0.77165 1.19386 1.20793 1.19897 1.20290 0.90508 1.02374 0.85250 1.23151 1.00780 0.80707 0.96811 1.70430 1.20412 1.33524 0.98032 1.22799 1.03442 0.88612 0.99162 1.23087 1.18261 0.97372 0.84755 1.96757 1.94063 1.38791 1.58132 1.43249 1.53702 1.11908 1.05961 0.72602 0.90203 0.93272 0.94276 0.94941 0.91040 1.00914 0.96233 0.92744 0.89054 0.92128 0.78655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.99 71.98 0.72 -3.84 16 2 C 0.05 1.64 5.55 86.30 0.48 2.11 16 3 N -0.54 -22.54 4.37 -905.37 -3.96 -26.50 16 4 C 0.21 10.73 4.59 85.56 0.39 11.12 16 5 C -0.52 -29.29 8.61 25.60 0.22 -29.07 16 6 H 0.06 3.28 7.66 -2.91 -0.02 3.26 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.15 5.34 5.42 85.56 0.46 5.80 16 14 C 0.25 8.20 6.68 138.11 0.92 9.12 16 15 N -0.50 -18.03 11.25 -188.00 -2.12 -20.14 16 16 C 0.01 0.33 11.84 83.54 0.99 1.32 16 17 C -0.04 -0.98 7.73 83.10 0.64 -0.34 16 18 Br 0.04 0.70 34.11 -20.37 -0.69 0.00 16 19 N -0.54 -13.29 5.33 -181.32 -0.97 -14.26 16 20 H 0.43 8.01 8.94 -92.71 -0.83 7.18 16 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.04 1.48 6.52 -2.39 -0.02 1.47 16 24 H 0.03 1.05 8.05 -2.39 -0.02 1.03 16 25 H 0.07 2.07 6.24 -2.39 -0.01 2.06 16 26 H -0.03 -1.44 8.00 -2.39 -0.02 -1.46 16 27 H 0.02 1.08 6.24 -2.39 -0.01 1.07 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.09 3.83 7.32 -2.39 -0.02 3.81 16 30 H 0.06 1.92 8.12 -2.38 -0.02 1.90 16 31 H 0.20 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -64.97 284.81 0.18 -64.78 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.32 Total: 7.04 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.29 Total: -2.87 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -6.75 Total: -115.74 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 35 Polarization: 0.70 SS G_CDS: -0.69 Total: 0.00 kcal Total: -64.97 0.18 -64.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891577290.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.058 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds