Wall clock time and date at job start Fri Apr 10 2020 15:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46929 * 59.99724 * 8 6 4 10 10 H 1.48496 * 109.47102 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46883 * 300.00099 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.30483 * 125.64278 * 275.02028 * 15 14 12 17 17 C 1.34148 * 109.26676 * 179.97438 * 16 15 14 18 18 C 1.34768 * 108.01942 * 0.02562 * 17 16 15 19 19 Br 1.89104 * 126.60061 * 180.02562 * 18 17 16 20 20 N 1.35122 * 125.64684 * 94.71755 * 15 14 12 21 21 H 0.97003 * 126.39687 * 359.96089 * 20 15 14 22 22 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 24 24 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 25 25 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 27 27 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 28 28 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 29 29 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 30 30 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 31 31 H 1.08002 * 125.99687 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 1.1148 -1.8668 4.0611 17 6 1.6999 -2.4132 5.1375 18 6 2.8501 -1.7499 5.3686 19 35 4.0875 -2.0887 6.7579 20 7 2.9534 -0.7879 4.4002 21 1 3.6771 -0.1502 4.2971 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7090 1.1614 -3.4844 26 1 3.8163 -1.3720 2.0501 27 1 3.8069 -1.2915 0.2719 28 1 3.9192 0.2044 1.2301 29 1 2.0518 0.9347 2.5280 30 1 0.4722 0.1325 2.3564 31 1 1.3163 -3.2394 5.7178 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891933303.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:46 Heat of formation + Delta-G solvation = 70.676136 kcal Electronic energy + Delta-G solvation = -15340.876985 eV Core-core repulsion = 12705.007850 eV Total energy + Delta-G solvation = -2635.869135 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 287.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05024 -37.08512 -33.03149 -32.70096 -31.78094 -29.77599 -28.93574 -26.60213 -24.68963 -23.42109 -21.42677 -20.67637 -19.53142 -17.72495 -16.28956 -15.64054 -15.01856 -14.45099 -14.17467 -13.82434 -13.63780 -13.53945 -12.51313 -12.30867 -11.95408 -11.36891 -11.17628 -11.00806 -10.96213 -10.78864 -10.67813 -10.19376 -10.15177 -10.00174 -9.95299 -9.84020 -8.96997 -8.48964 -8.29037 -7.34024 -6.05251 -4.10089 1.15287 1.80600 3.11012 3.22507 3.30627 3.35253 3.38670 4.37763 4.58148 4.94358 5.15969 5.27980 5.33609 5.65021 5.89671 5.95688 6.02721 6.18894 6.54763 6.62753 6.79484 7.01893 7.06158 7.21986 7.42852 7.61048 7.77780 8.05817 8.12318 8.24079 8.48140 8.94753 9.54939 11.01464 Molecular weight = 287.03amu Principal moments of inertia in cm(-1) A = 0.043468 B = 0.003693 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.996400 B = 7580.807968 C = 7906.593119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.033 3.967 14 C 0.126 3.874 15 C 0.268 3.732 16 N -0.469 5.469 17 C 0.031 3.969 18 C -0.054 4.054 19 Br 0.005 6.995 20 N -0.555 5.555 21 H 0.420 0.580 22 H 0.039 0.961 23 H 0.010 0.990 24 H 0.087 0.913 25 H 0.262 0.738 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.012 0.988 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -2.403 18.225 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.109 3.891 3 H 0.019 0.981 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.252 5.252 13 C -0.115 4.115 14 C -0.004 4.004 15 C 0.002 3.998 16 N -0.189 5.189 17 C -0.122 4.122 18 C -0.247 4.247 19 Br 0.087 6.913 20 N -0.160 5.160 21 H 0.258 0.742 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.569 -3.153 18.228 19.319 hybrid contribution 1.635 0.950 -0.736 2.029 sum 7.204 -2.203 17.492 19.045 Atomic orbital electron populations 1.21881 0.97309 1.00174 0.99961 1.19296 0.92654 0.91910 0.85205 0.98136 1.21068 1.31364 1.12390 0.89595 0.91856 1.24911 0.95114 0.95041 0.99000 1.69873 1.36695 1.22922 1.23651 0.86562 0.79007 0.79861 0.82002 1.20130 1.21315 1.20383 1.62117 1.09246 1.52566 1.01228 1.22297 0.88709 0.98630 1.01902 1.20643 1.03379 0.90976 0.85392 1.23654 0.83795 0.97347 0.94975 1.70491 1.29749 1.08332 1.10296 1.22389 0.91714 1.01304 0.96801 1.22812 1.01642 1.01965 0.98274 1.96706 1.57187 1.94772 1.42656 1.43344 1.21125 1.28310 1.23244 0.74153 0.94203 0.97157 0.89472 0.92839 0.94437 0.89770 0.96987 0.94146 0.86992 0.80610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.76 37.16 0.33 -2.90 16 2 C 0.21 5.23 2.06 -68.87 -0.14 5.09 16 3 H 0.00 0.03 8.14 -51.92 -0.42 -0.39 16 4 C -0.51 -13.50 7.88 -34.44 -0.27 -13.77 16 5 H 0.06 1.70 6.41 -52.49 -0.34 1.36 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.53 -11.03 4.61 -237.73 -1.10 -12.13 16 13 C 0.03 0.63 9.09 60.07 0.55 1.18 16 14 C 0.13 2.22 5.40 -4.98 -0.03 2.19 16 15 C 0.27 4.40 6.66 -155.36 -1.03 3.36 16 16 N -0.47 -8.27 11.25 -10.77 -0.12 -8.39 16 17 C 0.03 0.45 11.84 -17.77 -0.21 0.24 16 18 C -0.05 -0.71 7.73 -16.52 -0.13 -0.84 16 19 Br 0.00 0.05 34.11 -68.01 -2.32 -2.27 16 20 N -0.55 -7.43 5.70 -8.66 -0.05 -7.48 16 21 H 0.42 4.58 8.96 -40.82 -0.37 4.21 16 22 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 24 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.04 0.64 6.92 -51.93 -0.36 0.28 16 27 H 0.08 1.74 6.10 -51.93 -0.32 1.42 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.11 2.03 5.83 -51.93 -0.30 1.73 16 31 H 0.18 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 277.99 15.07 4.19 4.19 Total: -1.00 -28.88 277.99 -8.39 -37.27 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.57 Total: 0.92 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.04 Total: -3.90 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.64 Total: -52.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.32 Total: -2.27 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.88 -8.39 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891933303.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.947 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds