Wall clock time and date at job start Fri Apr 10 2020 15:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46929 * 59.99724 * 8 6 4 10 10 H 1.48496 * 109.47102 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46883 * 300.00099 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.30483 * 125.64278 * 275.02028 * 15 14 12 17 17 C 1.34148 * 109.26676 * 179.97438 * 16 15 14 18 18 C 1.34768 * 108.01942 * 0.02562 * 17 16 15 19 19 Br 1.89104 * 126.60061 * 180.02562 * 18 17 16 20 20 N 1.35122 * 125.64684 * 94.71755 * 15 14 12 21 21 H 0.97003 * 126.39687 * 359.96089 * 20 15 14 22 22 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 24 24 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 25 25 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 27 27 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 28 28 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 29 29 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 30 30 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 31 31 H 1.08002 * 125.99687 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 1.1148 -1.8668 4.0611 17 6 1.6999 -2.4132 5.1375 18 6 2.8501 -1.7499 5.3686 19 35 4.0875 -2.0887 6.7579 20 7 2.9534 -0.7879 4.4002 21 1 3.6771 -0.1502 4.2971 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7090 1.1614 -3.4844 26 1 3.8163 -1.3720 2.0501 27 1 3.8069 -1.2915 0.2719 28 1 3.9192 0.2044 1.2301 29 1 2.0518 0.9347 2.5280 30 1 0.4722 0.1325 2.3564 31 1 1.3163 -3.2394 5.7178 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891933303.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:46 Heat of formation + Delta-G solvation = 51.389883 kcal Electronic energy + Delta-G solvation = -15341.713300 eV Core-core repulsion = 12705.007850 eV Total energy + Delta-G solvation = -2636.705450 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 287.033 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.19618 -38.75779 -34.92588 -33.83804 -32.92405 -31.36885 -30.46798 -28.08757 -26.53886 -25.02364 -22.54793 -22.06438 -21.16838 -18.96410 -18.21981 -17.23304 -16.48489 -15.99851 -15.59910 -15.32949 -14.98031 -14.81340 -14.24912 -13.93905 -13.49942 -12.95642 -12.88308 -12.63850 -12.53527 -12.18247 -12.06295 -11.97687 -11.91023 -11.80239 -11.16436 -10.98191 -10.91048 -10.50103 -9.42771 -8.99391 -8.09861 -6.21080 0.13643 0.68354 1.44232 1.46458 1.53371 1.91502 2.15136 2.44557 3.18686 3.33931 3.46246 3.97359 4.21770 4.35981 4.47599 4.56819 4.65467 4.76543 4.93681 5.00696 5.07647 5.24471 5.47589 5.50346 5.71558 5.78260 6.14824 6.26807 6.33013 6.64785 6.90621 6.93543 7.47529 8.95650 Molecular weight = 287.03amu Principal moments of inertia in cm(-1) A = 0.043468 B = 0.003693 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.996400 B = 7580.807968 C = 7906.593119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.220 3.780 3 H -0.023 1.023 4 C -0.521 4.521 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.540 5.540 13 C 0.040 3.960 14 C 0.131 3.869 15 C 0.252 3.748 16 N -0.503 5.503 17 C 0.013 3.987 18 C -0.043 4.043 19 Br 0.038 6.962 20 N -0.542 5.542 21 H 0.432 0.568 22 H 0.027 0.973 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.262 0.738 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 -2.890 19.485 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.114 3.886 3 H -0.005 1.005 4 C -0.559 4.559 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.266 5.266 13 C -0.108 4.108 14 C 0.002 3.998 15 C -0.014 4.014 16 N -0.223 5.223 17 C -0.139 4.139 18 C -0.237 4.237 19 Br 0.121 6.879 20 N -0.149 5.149 21 H 0.273 0.727 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.773 -3.633 19.508 20.967 hybrid contribution 1.320 1.073 -0.971 1.959 sum 8.093 -2.559 18.537 20.388 Atomic orbital electron populations 1.21702 0.97209 0.99288 1.00013 1.19055 0.92696 0.90586 0.86269 1.00542 1.21354 1.31331 1.12316 0.90901 0.92466 1.25631 0.95331 0.95714 1.01660 1.69990 1.37526 1.24004 1.24157 0.85633 0.78742 0.78614 0.78759 1.20103 1.20936 1.19625 1.61975 1.10438 1.52802 1.01347 1.22210 0.87646 0.99277 1.01674 1.20514 1.02916 0.91910 0.84507 1.23176 0.85060 0.97789 0.95406 1.70405 1.31114 1.09107 1.11725 1.22794 0.92328 1.02228 0.96563 1.23105 1.01740 1.00659 0.98197 1.96758 1.55721 1.94584 1.40877 1.43241 1.20639 1.28351 1.22622 0.72696 0.95369 0.94641 0.91867 0.92871 0.92423 0.91887 0.95954 0.92212 0.87965 0.78562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.76 71.98 0.63 -5.36 16 2 C 0.22 10.85 2.06 44.17 0.09 10.94 16 3 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 4 C -0.52 -28.07 7.88 25.60 0.20 -27.87 16 5 H 0.06 3.09 6.41 -2.91 -0.02 3.07 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 N -0.54 -22.47 4.61 -906.03 -4.18 -26.66 16 13 C 0.04 1.49 9.09 127.69 1.16 2.65 16 14 C 0.13 4.50 5.40 85.56 0.46 4.96 16 15 C 0.25 7.91 6.66 138.11 0.92 8.83 16 16 N -0.50 -17.19 11.25 -187.99 -2.11 -19.31 16 17 C 0.01 0.35 11.84 83.54 0.99 1.34 16 18 C -0.04 -1.03 7.73 83.11 0.64 -0.39 16 19 Br 0.04 0.68 34.11 -20.37 -0.69 -0.02 16 20 N -0.54 -13.32 5.70 -181.31 -1.03 -14.36 16 21 H 0.43 8.28 8.96 -92.71 -0.83 7.45 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.03 1.48 6.20 -2.39 -0.01 1.46 16 24 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 25 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 26 H 0.06 1.87 6.92 -2.38 -0.02 1.85 16 27 H 0.06 2.59 6.10 -2.39 -0.01 2.57 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.80 8.12 -2.39 -0.02 1.79 16 30 H 0.10 3.67 5.83 -2.39 -0.01 3.65 16 31 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -61.25 277.99 0.12 -61.14 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.33 Total: 8.99 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.55 Total: -3.59 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -7.09 Total: -111.67 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 35 Polarization: 0.68 SS G_CDS: -0.69 Total: -0.02 kcal Total: -61.25 0.12 -61.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891933303.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.526 kcal (2) G-P(sol) polarization free energy of solvation -61.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds