Wall clock time and date at job start Fri Apr 10 2020 15:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46914 * 154.20910 * 3 2 1 5 5 C 1.36933 * 119.99651 * 267.89717 * 4 3 2 6 6 H 1.08005 * 119.99981 * 191.44673 * 5 4 3 7 7 C 1.38814 * 120.00317 * 11.43819 * 5 4 3 8 8 N 1.31619 * 119.99848 * 24.19847 * 7 5 4 9 9 Si 1.86796 * 120.00413 * 204.19173 * 7 5 4 10 10 H 1.48500 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47271 * 120.00232 * 9 7 5 12 12 H 1.48497 * 109.47343 * 240.00429 * 9 7 5 13 13 C 1.46497 * 120.00055 * 87.89393 * 4 3 2 14 14 C 1.50706 * 109.47081 * 269.99654 * 13 4 3 15 15 C 1.34685 * 126.59793 * 269.69204 * 14 13 4 16 16 Cl 1.73598 * 125.98440 * 359.96148 * 15 14 13 17 17 N 1.34233 * 108.03006 * 179.83920 * 15 14 13 18 18 C 1.30632 * 109.28318 * 0.43486 * 17 15 14 19 19 Cl 1.73601 * 125.65722 * 179.75548 * 18 17 15 20 20 N 1.35093 * 108.69591 * 359.73152 * 18 17 15 21 21 C 1.46496 * 126.40990 * 179.97438 * 20 18 17 22 22 H 4.40648 * 5.51407 * 180.02562 * 4 1 2 23 23 H 1.08993 * 109.47296 * 34.20993 * 3 2 1 24 24 H 1.08999 * 109.46934 * 274.20405 * 3 2 1 25 25 H 0.96998 * 120.00419 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.47527 * 30.00246 * 13 4 3 27 27 H 1.09001 * 109.46964 * 150.00665 * 13 4 3 28 28 H 1.09000 * 109.47207 * 270.02643 * 21 20 18 29 29 H 1.09004 * 109.47391 * 30.02299 * 21 20 18 30 30 H 1.08994 * 109.47442 * 150.02422 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2446 -0.6010 5 6 3.4029 1.2971 -1.9426 6 1 3.9323 2.1437 -2.3543 7 6 2.9955 0.2624 -2.7734 8 7 1.9837 -0.5032 -2.4232 9 14 3.8830 -0.0435 -4.3883 10 1 4.9772 0.9478 -4.5473 11 1 4.4539 -1.4144 -4.3875 12 1 2.9238 0.0925 -5.5138 13 6 3.3334 2.4321 0.2333 14 6 2.0629 3.2421 0.2664 15 6 1.7193 4.2316 -0.5802 16 17 2.6682 4.8076 -1.9149 17 7 0.5133 4.6927 -0.2128 18 6 0.1002 4.0323 0.8359 19 17 -1.4037 4.2874 1.6647 20 7 1.0369 3.1174 1.1682 21 6 0.9698 2.1698 2.2834 22 1 -1.0503 -0.0003 0.0004 23 1 3.0097 -0.8490 -0.5777 24 1 3.0093 -0.0745 1.0249 25 1 1.6987 -1.2260 -3.0039 26 1 3.5950 2.1250 1.2459 27 1 4.1391 3.0370 -0.1826 28 1 1.4079 2.6234 3.1725 29 1 -0.0713 1.9145 2.4812 30 1 1.5228 1.2664 2.0265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897162944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:04:14 Heat of formation + Delta-G solvation = 126.310842 kcal Electronic energy + Delta-G solvation = -18821.712653 eV Core-core repulsion = 15707.559775 eV Total energy + Delta-G solvation = -3114.152877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 287.029 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.14444 -38.15628 -37.87173 -37.41562 -35.06397 -33.56063 -33.37194 -30.83960 -27.98035 -27.93032 -27.10839 -23.71004 -22.59925 -21.14050 -19.34088 -18.48065 -18.23071 -17.25418 -16.74170 -16.23588 -15.79253 -15.45321 -15.26998 -15.08656 -14.34514 -14.17096 -13.64084 -13.37733 -13.26430 -13.09140 -12.78758 -12.70677 -12.54776 -12.23905 -12.22141 -11.97041 -11.86178 -11.19331 -10.76981 -10.73344 -10.55683 -10.24527 -9.25713 -9.00174 -7.81174 -5.16256 0.21094 0.76725 1.04010 1.47572 1.53726 1.60261 1.73034 2.15776 2.40161 2.54889 2.64614 3.31573 3.71238 3.84138 3.91752 4.10950 4.15078 4.36265 4.59078 4.65593 4.82819 4.95979 5.08168 5.22776 5.40325 5.65705 5.79980 5.85554 6.28188 6.61699 7.12598 7.41216 7.82646 8.19802 9.19762 Molecular weight = 287.03amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.007396 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.637255 B = 3785.067803 C = 4575.857004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.109 4.109 3 C 0.263 3.737 4 N -0.579 5.579 5 C -0.246 4.246 6 H 0.083 0.917 7 C -0.042 4.042 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.310 1.310 13 C 0.208 3.792 14 C 0.028 3.972 15 C 0.031 3.969 16 Cl -0.012 7.012 17 N -0.498 5.498 18 C 0.237 3.763 19 Cl 0.052 6.948 20 N -0.424 5.424 21 C 0.062 3.938 22 H 0.202 0.798 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.243 0.757 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 4.763 12.618 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.112 4.112 3 C 0.138 3.862 4 N -0.296 5.296 5 C -0.376 4.376 6 H 0.100 0.900 7 C -0.238 4.238 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.217 1.217 12 H -0.238 1.238 13 C 0.079 3.921 14 C -0.094 4.094 15 C -0.124 4.124 16 Cl 0.016 6.984 17 N -0.223 5.223 18 C -0.050 4.050 19 Cl 0.080 6.920 20 N -0.110 5.110 21 C -0.078 4.078 22 H 0.219 0.781 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.752 5.200 12.220 13.302 hybrid contribution -0.331 -0.733 -1.298 1.527 sum -1.082 4.467 10.922 11.850 Atomic orbital electron populations 1.24640 0.96014 1.03984 1.07646 1.24425 0.95636 0.96956 0.94165 1.18073 0.82598 0.89638 0.95878 1.44705 1.73742 1.05797 1.05381 1.19523 1.28691 1.05073 0.84307 0.89962 1.25329 0.97690 1.00572 1.00182 1.70282 1.24769 1.21985 1.38469 0.85547 0.78544 0.77696 0.80706 1.19199 1.21688 1.23822 1.19910 0.88607 0.86538 0.96996 1.22916 0.95844 0.98713 0.91884 1.20352 0.93782 1.01360 0.96896 1.98311 1.67743 1.88631 1.43732 1.69590 1.11684 1.29112 1.11906 1.22823 0.90737 0.94963 0.96462 1.98380 1.23348 1.95594 1.74697 1.45159 1.13573 1.27633 1.24653 1.22519 1.05867 0.92494 0.86934 0.78094 0.90739 0.90425 0.94715 0.88767 0.89272 0.86961 0.88492 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.52 18.89 74.32 1.40 -11.12 16 2 C -0.11 -4.61 9.32 31.13 0.29 -4.32 16 3 C 0.26 10.63 5.03 84.57 0.43 11.05 16 4 N -0.58 -24.35 2.47 -716.90 -1.77 -26.13 16 5 C -0.25 -12.03 9.69 84.03 0.81 -11.22 16 6 H 0.08 4.02 7.92 -2.91 -0.02 4.00 16 7 C -0.04 -2.16 4.87 84.86 0.41 -1.75 16 8 N -0.91 -49.64 9.28 21.65 0.20 -49.44 16 9 Si 0.94 43.49 29.62 68.60 2.03 45.53 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.31 -15.04 7.11 99.48 0.71 -14.34 16 13 C 0.21 7.06 5.65 85.64 0.48 7.55 16 14 C 0.03 1.02 6.40 40.91 0.26 1.28 16 15 C 0.03 1.26 7.70 83.51 0.64 1.90 16 16 Cl -0.01 -0.47 28.90 -2.72 -0.08 -0.55 16 17 N -0.50 -20.31 11.26 -182.05 -2.05 -22.36 16 18 C 0.24 8.18 8.51 180.21 1.53 9.71 16 19 Cl 0.05 1.39 28.77 -2.72 -0.08 1.31 16 20 N -0.42 -13.49 3.16 -526.36 -1.66 -15.15 16 21 C 0.06 1.41 9.90 127.77 1.27 2.67 16 22 H 0.20 7.31 7.80 -4.40 -0.03 7.27 16 23 H 0.07 3.49 6.34 -2.39 -0.02 3.47 16 24 H 0.08 2.45 7.56 -2.39 -0.02 2.43 16 25 H 0.24 13.38 8.31 -92.71 -0.77 12.61 16 26 H 0.09 2.48 7.65 -2.39 -0.02 2.46 16 27 H 0.09 2.98 7.80 -2.39 -0.02 2.96 16 28 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.00 7.81 -2.39 -0.02 1.98 16 30 H 0.09 2.26 5.12 -2.39 -0.01 2.25 16 Total: -1.00 -63.14 295.19 5.30 -57.85 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.17 Total: 3.20 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 7.53 Total: 5.75 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -5.29 Total: -113.09 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.16 Total: 0.76 kcal Total: -63.14 5.30 -57.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897162944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.158 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds