Wall clock time and date at job start Fri Apr 10 2020 15:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21318 * 120.00090 * 2 1 4 4 C 1.46649 * 120.00048 * 179.97438 * 2 1 3 5 5 C 1.40085 * 120.22662 * 0.02562 * 4 2 1 6 6 C 1.37817 * 119.87335 * 179.97438 * 5 4 2 7 7 F 1.35093 * 119.82940 * 180.02562 * 6 5 4 8 8 C 1.38874 * 120.33803 * 0.02562 * 6 5 4 9 9 C 1.37948 * 120.47199 * 359.69282 * 8 6 5 10 10 C 1.38931 * 120.11178 * 0.56507 * 9 8 6 11 11 N 1.38813 * 120.17011 * 179.73962 * 10 9 8 12 12 S 1.65602 * 120.00189 * 324.41207 * 11 10 9 13 13 O 1.42099 * 106.40009 * 314.55424 * 12 11 10 14 14 O 1.42093 * 106.40422 * 181.63519 * 12 11 10 15 15 C 1.76200 * 107.21767 * 68.09076 * 12 11 10 16 16 H 1.07990 * 120.00290 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00022 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99997 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 120.00398 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46965 * 89.99594 * 19 17 15 21 21 H 1.48497 * 109.47247 * 210.00141 * 19 17 15 22 22 H 1.48502 * 109.46701 * 329.99900 * 19 17 15 23 23 H 1.09006 * 109.47491 * 269.99888 * 1 2 3 24 24 H 1.09004 * 109.47493 * 29.99987 * 1 2 3 25 25 H 1.08996 * 109.47328 * 149.99918 * 1 2 3 26 26 H 1.07995 * 120.06868 * 359.95130 * 5 4 2 27 27 H 1.08000 * 119.76263 * 180.02562 * 8 6 5 28 28 H 1.07996 * 119.94433 * 180.28397 * 9 8 6 29 29 H 0.97000 * 120.00534 * 144.40515 * 11 10 9 30 30 H 0.96998 * 120.00442 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2700 0.0006 5 6 1.5446 -2.4859 0.0006 6 6 2.2411 -3.6752 0.0006 7 9 1.5693 -4.8473 0.0000 8 6 3.6298 -3.6748 0.0011 9 6 4.3290 -2.4857 -0.0047 10 6 3.6464 -1.2757 0.0006 11 7 4.3488 -0.0784 0.0002 12 16 5.7772 0.0439 0.8291 13 8 5.5565 -0.5538 2.0993 14 8 6.2215 1.3839 0.6675 15 6 6.9514 -0.9734 -0.0021 16 1 6.6600 -1.5245 -0.8839 17 6 8.2423 -1.0659 0.4733 18 7 8.5972 -0.3952 1.5474 19 14 9.4874 -2.1439 -0.4084 20 1 10.1901 -1.3436 -1.4433 21 1 10.4752 -2.6624 0.5717 22 1 8.7866 -3.2826 -1.0545 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 0.4647 -2.4915 0.0009 27 1 4.1662 -4.6122 0.0007 28 1 5.4089 -2.4954 -0.0089 29 1 4.0031 0.6867 -0.4857 30 1 9.5054 -0.4599 1.8817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980131.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:33 Heat of formation + Delta-G solvation = -144.020130 kcal Electronic energy + Delta-G solvation = -20736.178857 eV Core-core repulsion = 17151.718129 eV Total energy + Delta-G solvation = -3584.460728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.046 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.72486 -40.12417 -37.97192 -35.42639 -34.49458 -34.15987 -33.27233 -32.06871 -29.43368 -28.29948 -26.42710 -24.04543 -22.25188 -20.21442 -19.05336 -18.08106 -17.40376 -17.24023 -16.57605 -15.89469 -15.47534 -15.20110 -15.01286 -14.81499 -14.64824 -14.23671 -14.10830 -13.51752 -13.07117 -12.91039 -12.52706 -12.25834 -12.17002 -12.04496 -11.65529 -11.31800 -11.08531 -10.79775 -10.69682 -10.52074 -10.40419 -10.36756 -9.51768 -9.37166 -9.05470 -8.96004 -7.84743 -6.85735 -5.52017 0.66866 1.33804 2.02246 2.43995 2.98804 3.06307 3.10935 3.73194 3.92472 4.02900 4.37002 4.41203 4.49343 4.72834 4.93134 5.09591 5.31561 5.33122 5.39534 5.48329 5.65456 5.77085 5.89028 6.03434 6.22214 6.31730 6.42467 6.68625 6.96053 7.16122 7.50126 7.73708 7.77503 8.70230 10.08530 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.006843 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.913270 B = 4090.659942 C = 5241.638425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.399 3.601 3 O -0.457 6.457 4 C -0.202 4.202 5 C -0.084 4.084 6 C 0.045 3.955 7 F -0.144 7.144 8 C -0.081 4.081 9 C -0.159 4.159 10 C 0.257 3.743 11 N -1.054 6.054 12 S 2.696 3.304 13 O -0.988 6.988 14 O -0.990 6.990 15 C -1.026 5.026 16 H 0.111 0.889 17 C 0.134 3.866 18 N -0.838 5.838 19 Si 0.923 3.077 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.260 1.260 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.177 0.823 29 H 0.425 0.575 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 -6.141 -5.045 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.278 3.722 3 O -0.333 6.333 4 C -0.208 4.208 5 C -0.103 4.103 6 C 0.024 3.976 7 F -0.123 7.123 8 C -0.101 4.101 9 C -0.180 4.180 10 C 0.154 3.846 11 N -0.798 5.798 12 S 2.796 3.204 13 O -0.978 6.978 14 O -0.980 6.980 15 C -1.159 5.159 16 H 0.129 0.871 17 C -0.085 4.085 18 N -0.466 5.466 19 Si 0.747 3.253 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.184 1.184 23 H 0.116 0.884 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.194 0.806 29 H 0.265 0.735 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.895 -5.024 -4.022 13.524 hybrid contribution 0.535 -0.892 -1.022 1.458 sum -11.359 -5.916 -5.043 13.765 Atomic orbital electron populations 1.22209 0.93649 1.04746 1.04807 1.22183 0.91609 0.87218 0.71190 1.90460 1.71621 1.34217 1.37025 1.20099 0.92677 0.94822 1.13171 1.21117 1.00327 0.89971 0.98916 1.17392 0.90220 0.81091 1.08865 1.91471 1.80415 1.45790 1.94629 1.21190 0.91936 0.99554 0.97426 1.21982 1.03986 0.89939 1.02110 1.17643 0.89918 0.86586 0.90479 1.54471 1.41996 1.17249 1.66043 1.01303 0.71089 0.74524 0.73462 1.93412 1.84924 1.78955 1.40504 1.93404 1.79085 1.38866 1.86686 1.30553 1.10949 1.46858 1.27511 0.87074 1.24767 0.97934 0.92972 0.92847 1.69886 1.21876 1.35545 1.19327 0.86105 0.79417 0.80142 0.79661 1.19031 1.19806 1.18369 0.88425 0.89391 0.89568 0.83897 0.83879 0.80571 0.73487 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 9.75 36.00 0.35 -1.43 16 2 C 0.40 5.78 7.21 -30.92 -0.22 5.56 16 3 O -0.46 -8.25 14.66 5.52 0.08 -8.17 16 4 C -0.20 -3.13 5.88 -104.91 -0.62 -3.75 16 5 C -0.08 -1.06 9.33 -39.04 -0.36 -1.42 16 6 C 0.04 0.61 7.28 -39.50 -0.29 0.32 16 7 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 8 C -0.08 -1.20 10.00 -39.45 -0.39 -1.59 16 9 C -0.16 -2.87 9.02 -39.43 -0.36 -3.23 16 10 C 0.26 4.86 6.15 -83.55 -0.51 4.35 16 11 N -1.05 -22.53 5.06 32.58 0.16 -22.36 16 12 S 2.70 71.37 4.66 -107.50 -0.50 70.87 16 13 O -0.99 -28.48 17.49 -57.18 -1.00 -29.48 16 14 O -0.99 -29.21 18.02 -57.18 -1.03 -30.25 16 15 C -1.03 -26.51 7.65 30.60 0.23 -26.27 16 16 H 0.11 2.54 6.77 -52.49 -0.36 2.18 16 17 C 0.13 3.55 5.46 -17.82 -0.10 3.45 16 18 N -0.84 -23.67 13.19 55.43 0.73 -22.94 16 19 Si 0.92 19.36 29.54 -169.99 -5.02 14.33 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.57 6.46 -51.93 -0.34 0.23 16 26 H 0.14 1.26 6.36 -52.49 -0.33 0.93 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.18 3.44 4.41 -52.49 -0.23 3.20 16 29 H 0.43 8.54 6.57 -34.46 -0.23 8.32 16 30 H 0.29 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -34.15 282.15 -6.44 -40.59 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.89 Total: 9.02 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.27 Total: -24.02 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.90 Total: -45.30 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: -1.95 Total: -67.89 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 71.37 SS G_CDS: -0.50 Total: 70.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.15 -6.44 -40.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980131.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.428 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds