Wall clock time and date at job start Fri Apr 10 2020 15:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21313 * 120.00266 * 2 1 4 4 C 1.46758 * 119.99827 * 179.97438 * 2 1 3 5 5 C 1.40068 * 120.09167 * 359.97438 * 4 2 1 6 6 C 1.36539 * 120.06721 * 179.76526 * 5 4 2 7 7 C 1.39225 * 120.25054 * 0.50881 * 6 5 4 8 8 N 1.39022 * 119.91213 * 179.76447 * 7 6 5 9 9 S 1.65609 * 120.00004 * 327.79675 * 8 7 6 10 10 O 1.42094 * 106.39995 * 314.19305 * 9 8 7 11 11 O 1.42097 * 106.40090 * 181.27109 * 9 8 7 12 12 C 1.76200 * 107.21629 * 67.73496 * 9 8 7 13 13 H 1.07998 * 120.00485 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99942 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99540 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00380 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46863 * 59.99572 * 16 14 12 18 18 H 1.48489 * 109.47300 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46876 * 300.00279 * 16 14 12 20 20 C 1.39496 * 120.17370 * 359.48674 * 7 6 5 21 21 F 1.35100 * 120.03326 * 180.27490 * 20 7 6 22 22 C 1.37709 * 119.93436 * 0.25511 * 20 7 6 23 23 H 1.09003 * 109.47176 * 240.00360 * 1 2 3 24 24 H 1.08999 * 109.47279 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47656 * 120.00653 * 1 2 3 26 26 H 1.07996 * 119.96465 * 0.02562 * 5 4 2 27 27 H 1.07997 * 119.87833 * 180.25454 * 6 5 4 28 28 H 0.96995 * 120.00202 * 147.79658 * 8 7 6 29 29 H 0.96999 * 119.99557 * 180.02562 * 15 14 12 30 30 H 1.08004 * 120.12124 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2407 -1.2710 0.0006 5 6 1.5422 -2.4851 0.0017 6 6 2.2254 -3.6673 -0.0027 7 6 3.6176 -3.6729 0.0025 8 7 4.3061 -4.8807 0.0030 9 16 3.6589 -6.2023 0.7627 10 8 3.1939 -5.7505 2.0271 11 8 4.6028 -7.2538 0.6121 12 6 2.2304 -6.6814 -0.1508 13 1 1.9400 -6.1254 -1.0299 14 6 1.4827 -7.7656 0.2574 15 7 1.8361 -8.4423 1.3282 16 14 -0.0321 -8.2732 -0.7106 17 1 0.3602 -8.6113 -2.1024 18 1 -0.6543 -9.4595 -0.0700 19 1 -1.0060 -7.1523 -0.7294 20 6 4.3236 -2.4697 0.0014 21 9 5.6746 -2.4785 0.0008 22 6 3.6421 -1.2731 0.0004 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3634 -0.5139 -0.8899 26 1 0.4623 -2.4861 0.0017 27 1 1.6838 -4.6016 -0.0060 28 1 5.1654 -4.9493 -0.4415 29 1 1.3103 -9.2053 1.6152 30 1 4.1856 -0.3398 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980148.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:27 Heat of formation + Delta-G solvation = -150.777088 kcal Electronic energy + Delta-G solvation = -20448.200136 eV Core-core repulsion = 16863.446405 eV Total energy + Delta-G solvation = -3584.753732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.046 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.69435 -39.92065 -38.33535 -35.55667 -34.78497 -34.28939 -33.34576 -31.25363 -30.37744 -28.28545 -26.49943 -23.52407 -22.74512 -20.08823 -19.16359 -18.20522 -17.79487 -16.92096 -16.59903 -15.97712 -15.58085 -15.46060 -15.03979 -14.89520 -14.62851 -14.28854 -14.07123 -13.50280 -13.21115 -12.58453 -12.52840 -12.37252 -12.26960 -12.12525 -11.78345 -11.36247 -11.18056 -10.96031 -10.77661 -10.61440 -10.50641 -10.43671 -9.80446 -9.42927 -9.09175 -8.84110 -7.98981 -6.92836 -5.59617 0.64753 1.33052 1.85606 2.39245 2.95199 3.01604 3.05484 3.74122 3.84872 3.95320 4.23788 4.39671 4.42537 4.81859 4.95734 5.11609 5.26763 5.31719 5.32723 5.39803 5.59240 5.74547 5.95590 6.09412 6.18623 6.29830 6.37183 6.50813 6.88562 7.08749 7.43609 7.50477 7.67174 8.63112 10.01569 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.006161 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.860364 B = 4543.540419 C = 5703.271979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.403 3.597 3 O -0.470 6.470 4 C -0.194 4.194 5 C -0.040 4.040 6 C -0.165 4.165 7 C 0.210 3.790 8 N -1.062 6.062 9 S 2.695 3.305 10 O -0.983 6.983 11 O -0.990 6.990 12 C -1.024 5.024 13 H 0.112 0.888 14 C 0.134 3.866 15 N -0.837 5.837 16 Si 0.924 3.076 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.261 1.261 20 C 0.037 3.963 21 F -0.137 7.137 22 C -0.066 4.066 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.142 0.858 27 H 0.178 0.822 28 H 0.418 0.582 29 H 0.295 0.705 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 10.394 -4.635 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.283 3.717 3 O -0.346 6.346 4 C -0.197 4.197 5 C -0.060 4.060 6 C -0.186 4.186 7 C 0.107 3.893 8 N -0.800 5.800 9 S 2.796 3.204 10 O -0.973 6.973 11 O -0.980 6.980 12 C -1.157 5.157 13 H 0.130 0.870 14 C -0.085 4.085 15 N -0.466 5.466 16 Si 0.748 3.252 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.185 1.185 20 C 0.013 3.987 21 F -0.116 7.116 22 C -0.086 4.086 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.160 0.840 27 H 0.195 0.805 28 H 0.252 0.748 29 H 0.106 0.894 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.202 10.303 -3.600 11.374 hybrid contribution -0.379 -0.500 -1.109 1.274 sum -3.581 9.804 -4.709 11.450 Atomic orbital electron populations 1.22252 0.93668 1.04941 1.04897 1.22283 0.91628 0.87291 0.70524 1.90531 1.72277 1.34376 1.37463 1.20167 0.93249 0.95116 1.11136 1.21021 1.00499 0.90309 0.94126 1.21672 0.91633 1.02412 1.02881 1.17775 0.91886 0.85000 0.94609 1.54358 1.32314 1.23665 1.69699 1.01379 0.75235 0.69985 0.73843 1.93426 1.82113 1.80750 1.41060 1.93412 1.65345 1.52216 1.87020 1.30452 1.31782 1.25478 1.27974 0.87004 1.24769 0.97925 0.92592 0.93262 1.69873 1.38608 1.17337 1.20742 0.86121 0.80071 0.78805 0.80233 1.18692 1.19966 1.18482 1.17332 0.77189 0.93208 1.10950 1.91465 1.28284 1.97225 1.94605 1.21125 0.93914 0.96860 0.96699 0.88521 0.89909 0.88648 0.83987 0.80530 0.74760 0.89389 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 8.92 36.00 0.32 -1.31 16 2 C 0.40 4.96 7.21 -30.87 -0.22 4.74 16 3 O -0.47 -7.16 17.07 5.53 0.09 -7.07 16 4 C -0.19 -2.64 5.87 -105.05 -0.62 -3.26 16 5 C -0.04 -0.54 9.41 -39.51 -0.37 -0.92 16 6 C -0.17 -2.81 8.80 -39.83 -0.35 -3.17 16 7 C 0.21 3.81 6.21 -83.77 -0.52 3.29 16 8 N -1.06 -20.79 5.68 32.46 0.18 -20.61 16 9 S 2.69 66.99 4.62 -107.50 -0.50 66.50 16 10 O -0.98 -26.94 17.39 -57.17 -0.99 -27.93 16 11 O -0.99 -27.46 18.02 -57.17 -1.03 -28.49 16 12 C -1.02 -25.08 7.54 30.60 0.23 -24.85 16 13 H 0.11 2.41 6.92 -52.49 -0.36 2.04 16 14 C 0.13 3.39 5.46 -17.82 -0.10 3.29 16 15 N -0.84 -22.72 13.19 55.43 0.73 -21.99 16 16 Si 0.92 18.49 29.54 -169.99 -5.02 13.47 16 17 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 20 C 0.04 0.61 7.30 -39.31 -0.29 0.32 16 21 F -0.14 -2.26 16.89 2.25 0.04 -2.22 16 22 C -0.07 -0.98 9.57 -39.06 -0.37 -1.36 16 23 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.14 1.38 7.02 -52.49 -0.37 1.01 16 27 H 0.18 3.24 4.44 -52.49 -0.23 3.01 16 28 H 0.42 7.10 8.71 -34.47 -0.30 6.80 16 29 H 0.30 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.14 1.96 7.64 -52.48 -0.40 1.56 16 LS Contribution 287.33 15.07 4.33 4.33 Total: -1.00 -32.95 287.33 -6.51 -39.46 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -2.06 Total: 7.77 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.29 Total: -23.21 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.92 Total: -42.60 kcal Atomic # 8 Polarization: -61.56 SS G_CDS: -1.93 Total: -63.49 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 66.99 SS G_CDS: -0.50 Total: 66.50 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.95 -6.51 -39.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980148.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.316 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds