Wall clock time and date at job start Fri Apr 10 2020 15:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21313 * 120.00266 * 2 1 4 4 C 1.46758 * 119.99827 * 179.97438 * 2 1 3 5 5 C 1.40068 * 120.09167 * 359.97438 * 4 2 1 6 6 C 1.36539 * 120.06721 * 179.76526 * 5 4 2 7 7 C 1.39225 * 120.25054 * 0.50881 * 6 5 4 8 8 N 1.39022 * 119.91213 * 179.76447 * 7 6 5 9 9 S 1.65609 * 120.00004 * 327.79675 * 8 7 6 10 10 O 1.42094 * 106.39995 * 314.19305 * 9 8 7 11 11 O 1.42097 * 106.40090 * 181.27109 * 9 8 7 12 12 C 1.76200 * 107.21629 * 67.73496 * 9 8 7 13 13 H 1.07998 * 120.00485 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99942 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99540 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00380 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46863 * 59.99572 * 16 14 12 18 18 H 1.48489 * 109.47300 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46876 * 300.00279 * 16 14 12 20 20 C 1.39496 * 120.17370 * 359.48674 * 7 6 5 21 21 F 1.35100 * 120.03326 * 180.27490 * 20 7 6 22 22 C 1.37709 * 119.93436 * 0.25511 * 20 7 6 23 23 H 1.09003 * 109.47176 * 240.00360 * 1 2 3 24 24 H 1.08999 * 109.47279 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47656 * 120.00653 * 1 2 3 26 26 H 1.07996 * 119.96465 * 0.02562 * 5 4 2 27 27 H 1.07997 * 119.87833 * 180.25454 * 6 5 4 28 28 H 0.96995 * 120.00202 * 147.79658 * 8 7 6 29 29 H 0.96999 * 119.99557 * 180.02562 * 15 14 12 30 30 H 1.08004 * 120.12124 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2407 -1.2710 0.0006 5 6 1.5422 -2.4851 0.0017 6 6 2.2254 -3.6673 -0.0027 7 6 3.6176 -3.6729 0.0025 8 7 4.3061 -4.8807 0.0030 9 16 3.6589 -6.2023 0.7627 10 8 3.1939 -5.7505 2.0271 11 8 4.6028 -7.2538 0.6121 12 6 2.2304 -6.6814 -0.1508 13 1 1.9400 -6.1254 -1.0299 14 6 1.4827 -7.7656 0.2574 15 7 1.8361 -8.4423 1.3282 16 14 -0.0321 -8.2732 -0.7106 17 1 0.3602 -8.6113 -2.1024 18 1 -0.6543 -9.4595 -0.0700 19 1 -1.0060 -7.1523 -0.7294 20 6 4.3236 -2.4697 0.0014 21 9 5.6746 -2.4785 0.0008 22 6 3.6421 -1.2731 0.0004 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3634 -0.5139 -0.8899 26 1 0.4623 -2.4861 0.0017 27 1 1.6838 -4.6016 -0.0060 28 1 5.1654 -4.9493 -0.4415 29 1 1.3103 -9.2053 1.6152 30 1 4.1856 -0.3398 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980148.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:03:26 Heat of formation + Delta-G solvation = -175.759684 kcal Electronic energy + Delta-G solvation = -20449.283463 eV Core-core repulsion = 16863.446405 eV Total energy + Delta-G solvation = -3585.837058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 287.046 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.00014 -41.05372 -39.53548 -37.59138 -36.36145 -36.17869 -35.23329 -32.30405 -31.54809 -29.35356 -28.40994 -24.73502 -24.01010 -21.33164 -20.83355 -19.85575 -19.29275 -18.38876 -18.10149 -17.41128 -16.96117 -16.72499 -16.59813 -16.07708 -15.86063 -15.81650 -15.65761 -14.97359 -14.47955 -14.04028 -13.87041 -13.71834 -13.35418 -13.10625 -12.96926 -12.93111 -12.90624 -12.67811 -12.61412 -12.40777 -12.28183 -11.87485 -11.20749 -10.97843 -10.81952 -10.07098 -9.35326 -8.78489 -7.55114 -0.53498 0.01156 0.11021 1.31140 1.41696 1.42901 1.56916 2.20565 2.54169 2.57687 2.60215 2.90088 3.22555 3.51416 3.63485 3.92938 3.98382 4.11374 4.16632 4.38728 4.54862 4.80168 4.81358 4.95135 5.00428 5.04243 5.19722 5.24218 5.35445 5.63702 5.83913 5.97388 6.54802 6.72468 8.18190 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.006161 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.860364 B = 4543.540419 C = 5703.271979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.407 3.593 3 O -0.502 6.502 4 C -0.187 4.187 5 C -0.021 4.021 6 C -0.183 4.183 7 C 0.176 3.824 8 N -1.056 6.056 9 S 2.699 3.301 10 O -1.020 7.020 11 O -1.032 7.032 12 C -1.027 5.027 13 H 0.139 0.861 14 C 0.075 3.925 15 N -0.890 5.890 16 Si 0.993 3.007 17 H -0.254 1.254 18 H -0.271 1.271 19 H -0.234 1.234 20 C 0.030 3.970 21 F -0.142 7.142 22 C -0.069 4.069 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.122 0.878 26 H 0.189 0.811 27 H 0.165 0.835 28 H 0.427 0.573 29 H 0.302 0.698 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 11.852 -6.040 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.289 3.711 3 O -0.381 6.381 4 C -0.189 4.189 5 C -0.039 4.039 6 C -0.204 4.204 7 C 0.076 3.924 8 N -0.799 5.799 9 S 2.802 3.198 10 O -1.009 7.009 11 O -1.022 7.022 12 C -1.161 5.161 13 H 0.156 0.844 14 C -0.139 4.139 15 N -0.520 5.520 16 Si 0.811 3.189 17 H -0.178 1.178 18 H -0.195 1.195 19 H -0.157 1.157 20 C 0.006 3.994 21 F -0.120 7.120 22 C -0.089 4.089 23 H 0.135 0.865 24 H 0.108 0.892 25 H 0.140 0.860 26 H 0.206 0.794 27 H 0.182 0.818 28 H 0.263 0.737 29 H 0.112 0.888 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.115 11.791 -4.995 14.191 hybrid contribution 0.568 -0.800 -0.675 1.191 sum -5.547 10.992 -5.670 13.555 Atomic orbital electron populations 1.22324 0.89636 1.06284 1.07020 1.22809 0.93553 0.85780 0.68984 1.90539 1.73380 1.35194 1.39015 1.20546 0.92840 0.96329 1.09202 1.21428 1.02562 0.88568 0.91379 1.21733 0.91185 1.03331 1.04135 1.18057 0.92698 0.84530 0.97141 1.53644 1.32846 1.23403 1.70014 1.00889 0.75209 0.69940 0.73762 1.93364 1.82605 1.81429 1.43536 1.93348 1.66625 1.54617 1.87615 1.30684 1.31108 1.25807 1.28547 0.84369 1.26046 1.01497 0.92309 0.94046 1.69986 1.40621 1.18458 1.22955 0.85103 0.75982 0.79329 0.78509 1.17836 1.19517 1.15655 1.17429 0.77101 0.93322 1.11519 1.91449 1.28622 1.97257 1.94709 1.21351 0.94907 0.96424 0.96187 0.86469 0.89221 0.85976 0.79429 0.81801 0.73743 0.88812 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 8.92 71.23 0.64 -1.58 16 2 C 0.41 8.64 7.21 27.91 0.20 8.84 16 3 O -0.50 -14.20 17.07 -3.13 -0.05 -14.26 16 4 C -0.19 -4.56 5.87 -20.14 -0.12 -4.68 16 5 C -0.02 -0.49 9.41 22.32 0.21 -0.28 16 6 C -0.18 -5.98 8.80 22.11 0.19 -5.78 16 7 C 0.18 6.40 6.21 38.54 0.24 6.64 16 8 N -1.06 -42.42 5.68 -51.22 -0.29 -42.71 16 9 S 2.70 138.18 4.62 -56.49 -0.26 137.92 16 10 O -1.02 -57.74 17.39 -128.00 -2.23 -59.97 16 11 O -1.03 -59.67 18.02 -128.00 -2.31 -61.98 16 12 C -1.03 -50.14 7.54 67.74 0.51 -49.63 16 13 H 0.14 5.77 6.92 -2.91 -0.02 5.75 16 14 C 0.08 3.77 5.46 84.65 0.46 4.23 16 15 N -0.89 -49.16 13.19 21.45 0.28 -48.88 16 16 Si 0.99 36.22 29.54 68.60 2.03 38.24 16 17 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 18 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 19 H -0.23 -7.48 7.11 99.48 0.71 -6.77 16 20 C 0.03 0.98 7.30 22.45 0.16 1.14 16 21 F -0.14 -4.72 16.89 44.97 0.76 -3.96 16 22 C -0.07 -1.96 9.57 22.61 0.22 -1.74 16 23 H 0.12 0.94 8.08 -2.39 -0.02 0.92 16 24 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 25 H 0.12 0.81 8.08 -2.39 -0.02 0.79 16 26 H 0.19 2.60 7.02 -2.91 -0.02 2.58 16 27 H 0.16 5.83 4.44 -2.91 -0.01 5.81 16 28 H 0.43 15.08 8.71 -96.75 -0.84 14.24 16 29 H 0.30 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.15 4.01 7.64 -2.91 -0.02 3.99 16 Total: -1.00 -74.01 287.33 1.02 -72.99 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.37 Total: 25.43 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 2.72 Total: -42.84 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -0.01 Total: -91.58 kcal Atomic # 8 Polarization: -131.62 SS G_CDS: -4.59 Total: -136.20 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.76 Total: -3.96 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: 138.18 SS G_CDS: -0.26 Total: 137.92 kcal Total: -74.01 1.02 -72.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980148.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.770 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds