Wall clock time and date at job start Fri Apr 10 2020 15:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47061 * 122.54527 * 3 2 1 5 5 C 1.36955 * 119.99931 * 269.99936 * 4 3 2 6 6 H 1.07994 * 120.00460 * 136.99669 * 5 4 3 7 7 C 1.38989 * 119.99306 * 316.99679 * 5 4 3 8 8 N 1.31419 * 119.99485 * 168.85599 * 7 5 4 9 9 Si 1.86790 * 120.00492 * 348.85431 * 7 5 4 10 10 H 1.48500 * 109.47359 * 95.13878 * 9 7 5 11 11 H 1.48502 * 109.47298 * 215.13778 * 9 7 5 12 12 H 1.48501 * 109.47153 * 335.13881 * 9 7 5 13 13 C 1.34770 * 120.00278 * 89.99477 * 4 3 2 14 14 O 1.21657 * 120.00167 * 4.38623 * 13 4 3 15 15 C 1.47242 * 120.00028 * 184.38920 * 13 4 3 16 16 N 1.35746 * 126.22663 * 356.18144 * 15 13 4 17 17 C 1.30161 * 108.99301 * 179.97438 * 16 15 13 18 18 N 1.35861 * 109.05325 * 359.74410 * 17 16 15 19 19 H 0.96999 * 126.18352 * 180.29186 * 18 17 16 20 20 C 1.35942 * 107.63707 * 0.42242 * 18 17 16 21 21 C 1.50700 * 126.61850 * 179.84317 * 20 18 17 22 22 F 1.39901 * 109.46776 * 359.69216 * 21 20 18 23 23 F 1.39898 * 109.47501 * 239.68954 * 21 20 18 24 24 F 1.39902 * 109.47189 * 119.68877 * 21 20 18 25 25 H 4.40642 * 5.51473 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47363 * 2.53811 * 3 2 1 27 27 H 1.08997 * 109.46880 * 242.53890 * 3 2 1 28 28 H 0.96996 * 119.99683 * 179.97438 * 8 7 5 29 29 H 1.07998 * 125.47034 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7439 -1.1643 5 6 3.3625 0.0915 -2.3466 6 1 3.0484 0.5371 -3.2788 7 6 3.9988 -1.1442 -2.3466 8 7 4.0247 -1.8698 -3.4419 9 14 4.8171 -1.7734 -0.7898 10 1 3.8754 -2.6589 -0.0587 11 1 6.0391 -2.5379 -1.1471 12 1 5.1874 -0.6238 0.0742 13 6 3.3579 2.0697 -1.0721 14 8 3.2317 2.6349 -0.0022 15 6 3.7553 2.8340 -2.2662 16 7 4.0025 2.3240 -3.4996 17 6 4.3267 3.2957 -4.3027 18 7 4.2943 4.4678 -3.6164 19 1 4.4895 5.3473 -3.9757 20 6 3.9417 4.1848 -2.3343 21 6 3.7812 5.1723 -1.2074 22 9 4.0602 6.4614 -1.6737 23 9 4.6666 4.8484 -0.1738 24 9 2.4676 5.1239 -0.7284 25 1 -1.0502 0.0001 0.0003 26 1 3.0098 -1.0258 -0.0455 27 1 3.0090 0.4747 0.9119 28 1 4.4691 -2.7320 -3.4420 29 1 4.5772 3.1879 -5.3477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847172322.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:58 Heat of formation + Delta-G solvation = -37.440274 kcal Electronic energy + Delta-G solvation = -23209.444975 eV Core-core repulsion = 19108.058261 eV Total energy + Delta-G solvation = -4101.386714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.83718 -47.44948 -47.18401 -41.87952 -38.66453 -35.26807 -32.89462 -32.37469 -31.48975 -30.50663 -27.24060 -25.61412 -24.71004 -22.14144 -21.60199 -19.67098 -18.79183 -18.35661 -18.16012 -17.88039 -16.75014 -16.26334 -15.71716 -15.28351 -15.02784 -14.38283 -14.22350 -14.09669 -13.83642 -13.72151 -13.68819 -13.39929 -13.38318 -13.02784 -12.85977 -12.46402 -12.21622 -11.85420 -11.02914 -10.75414 -10.22233 -9.96129 -9.88042 -9.52305 -9.37806 -9.28281 -8.75325 -8.62537 -7.82537 -6.33989 -4.00342 1.50561 2.52368 2.86540 3.06815 3.18211 3.22470 3.27884 3.31494 3.53328 4.02170 4.15241 4.17353 4.30672 4.50737 4.71652 4.85934 4.99908 5.20066 5.33939 5.70930 5.91793 5.97320 6.17962 6.53083 6.55225 7.26318 7.32151 8.03791 8.10530 8.26748 8.54681 8.97237 9.31469 9.56413 10.74921 Molecular weight = 287.06amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.007267 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.720041 B = 3852.313586 C = 4509.003030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C 0.200 3.800 4 N -0.438 5.438 5 C -0.320 4.320 6 H 0.138 0.862 7 C 0.067 3.933 8 N -0.861 5.861 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.259 1.259 13 C 0.544 3.456 14 O -0.580 6.580 15 C 0.075 3.925 16 N -0.408 5.408 17 C 0.205 3.795 18 N -0.552 5.552 19 H 0.422 0.578 20 C -0.097 4.097 21 C 0.558 3.442 22 F -0.193 7.193 23 F -0.156 7.156 24 F -0.158 7.158 25 H 0.213 0.787 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.273 0.727 29 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 10.902 -0.911 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.166 4.166 3 C 0.079 3.921 4 N -0.157 5.157 5 C -0.448 4.448 6 H 0.155 0.845 7 C -0.140 4.140 8 N -0.497 5.497 9 Si 0.693 3.307 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.183 1.183 13 C 0.333 3.667 14 O -0.464 6.464 15 C -0.059 4.059 16 N -0.126 5.126 17 C -0.079 4.079 18 N -0.156 5.156 19 H 0.261 0.739 20 C -0.216 4.216 21 C 0.502 3.498 22 F -0.174 7.174 23 F -0.137 7.137 24 F -0.139 7.139 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.455 10.104 -0.636 10.134 hybrid contribution 0.458 0.782 0.561 1.066 sum 0.913 10.886 -0.075 10.924 Atomic orbital electron populations 1.24649 0.95592 1.02219 1.01655 1.23583 0.94728 0.99086 0.99228 1.18725 0.84065 0.97485 0.91832 1.43578 1.54807 1.05997 1.11282 1.19790 1.37064 1.02709 0.85232 0.84481 1.25376 0.95642 0.96256 0.96712 1.69646 1.40941 1.11596 1.27510 0.87111 0.79741 0.79779 0.84081 1.19955 1.21199 1.18340 1.17015 0.81158 0.82892 0.85656 1.90733 1.57659 1.70279 1.27760 1.20582 1.02893 0.88186 0.94231 1.71617 1.13830 1.27534 0.99626 1.25914 1.02624 0.79102 1.00303 1.43065 1.53209 1.11853 1.07516 0.73902 1.20682 1.17982 0.95797 0.87139 1.16816 0.75136 0.76818 0.81008 1.93136 1.93762 1.41782 1.88745 1.93263 1.68273 1.92269 1.59861 1.93256 1.35714 1.96018 1.88953 0.77013 0.89567 0.88266 0.91628 0.76303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.25 19.25 29.55 0.57 -3.68 15 2 C -0.17 -3.64 13.67 -37.12 -0.51 -4.15 15 3 C 0.20 4.65 4.49 -6.83 -0.03 4.62 15 4 N -0.44 -11.06 2.10 -119.22 -0.25 -11.31 15 5 C -0.32 -8.54 8.43 -14.98 -0.13 -8.67 15 6 H 0.14 3.87 6.04 -52.49 -0.32 3.55 15 7 C 0.07 1.78 5.44 -17.45 -0.09 1.68 15 8 N -0.86 -23.88 13.96 55.50 0.77 -23.11 15 9 Si 0.86 20.38 24.67 -169.99 -4.19 16.19 15 10 H -0.27 -6.14 6.85 56.52 0.39 -5.75 15 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 12 H -0.26 -6.12 6.89 56.52 0.39 -5.73 15 13 C 0.54 13.39 7.62 -12.60 -0.10 13.29 15 14 O -0.58 -14.63 13.50 5.23 0.07 -14.56 15 15 C 0.08 1.63 6.71 -83.10 -0.56 1.08 15 16 N -0.41 -8.35 8.02 -11.03 -0.09 -8.44 15 17 C 0.20 2.90 13.03 -89.90 -1.17 1.73 15 18 N -0.55 -7.15 6.00 -9.97 -0.06 -7.21 15 19 H 0.42 3.61 8.79 -40.82 -0.36 3.25 15 20 C -0.10 -1.72 6.52 -81.39 -0.53 -2.25 15 21 C 0.56 9.65 2.81 36.01 0.10 9.76 15 22 F -0.19 -2.71 17.05 2.25 0.04 -2.67 15 23 F -0.16 -2.95 16.06 2.25 0.04 -2.92 15 24 F -0.16 -2.99 16.31 2.25 0.04 -2.95 15 25 H 0.21 3.01 7.80 -54.08 -0.42 2.59 15 26 H 0.09 2.00 3.16 -51.93 -0.16 1.83 15 27 H 0.10 2.19 7.36 -51.93 -0.38 1.81 15 28 H 0.27 7.09 8.31 -40.82 -0.34 6.76 15 29 H 0.22 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -32.67 276.01 -3.15 -35.82 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -1.23 Total: 3.58 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -2.44 Total: 13.42 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.38 Total: -50.07 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.56 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.11 Total: -8.54 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.19 Total: 16.19 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.67 -3.15 -35.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847172322.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.619 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds